Wall clock time and date at job start Sun Mar 29 2020 22:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 120.00058 * 2 1 4 4 H 1.08003 * 120.00360 * 321.72222 * 3 2 1 5 5 C 1.38816 * 120.00026 * 141.71677 * 3 2 1 6 6 N 1.31613 * 119.99935 * 157.48993 * 5 3 2 7 7 Si 1.86797 * 120.00037 * 337.49610 * 5 3 2 8 8 H 1.48502 * 109.47196 * 95.65863 * 7 5 3 9 9 H 1.48498 * 109.47267 * 215.65590 * 7 5 3 10 10 H 1.48495 * 109.47243 * 335.65808 * 7 5 3 11 11 C 1.46499 * 119.99846 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46870 * 90.00624 * 11 2 1 13 13 H 1.09003 * 109.54167 * 304.82076 * 12 11 2 14 14 C 1.53177 * 109.54829 * 64.99597 * 12 11 2 15 15 C 1.53085 * 109.21676 * 176.81662 * 14 12 11 16 16 O 1.42912 * 109.41362 * 302.48976 * 15 14 12 17 17 C 1.42907 * 114.14919 * 61.06201 * 16 15 14 18 18 C 1.53006 * 109.47612 * 178.89298 * 17 16 15 19 19 C 1.52992 * 109.49302 * 58.86347 * 17 16 15 20 20 C 1.53095 * 109.41499 * 298.87333 * 17 16 15 21 21 H 1.09000 * 109.47087 * 265.67053 * 1 2 3 22 22 H 1.09003 * 109.47101 * 25.66874 * 1 2 3 23 23 H 1.09003 * 109.47252 * 145.66852 * 1 2 3 24 24 H 0.97004 * 120.00536 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.47707 * 330.00766 * 11 2 1 26 26 H 1.09005 * 109.47382 * 209.99773 * 11 2 1 27 27 H 1.09003 * 109.52139 * 296.76021 * 14 12 11 28 28 H 1.08999 * 109.51676 * 56.87658 * 14 12 11 29 29 H 1.08994 * 109.48389 * 62.40897 * 15 14 12 30 30 H 1.09003 * 109.48023 * 182.44553 * 15 14 12 31 31 H 1.08997 * 109.46431 * 179.97438 * 18 17 16 32 32 H 1.08994 * 109.47137 * 299.94008 * 18 17 16 33 33 H 1.09001 * 109.47072 * 59.94490 * 18 17 16 34 34 H 1.09006 * 109.47022 * 300.05255 * 19 17 16 35 35 H 1.09002 * 109.47522 * 60.04858 * 19 17 16 36 36 H 1.08998 * 109.47058 * 180.02562 * 19 17 16 37 37 H 1.09000 * 109.52112 * 297.70688 * 20 17 16 38 38 H 1.08996 * 109.57613 * 177.54965 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7839 2.0207 -0.5794 5 6 3.3139 1.3151 0.7448 6 7 4.1981 2.2376 0.4292 7 14 3.6259 0.1797 2.1949 8 1 4.4699 -0.9612 1.7577 9 1 4.3252 0.9295 3.2692 10 1 2.3308 -0.3318 2.7107 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 1 1.5065 -1.7591 -1.9811 14 6 3.3833 -0.7069 -2.1287 15 6 3.6971 -1.1976 -3.5444 16 8 4.2832 -2.4993 -3.4769 17 6 3.4396 -3.4905 -2.8870 18 6 4.1579 -4.8414 -2.8938 19 6 2.1413 -3.5988 -3.6890 20 6 3.1169 -3.0911 -1.4447 21 1 -0.3633 -0.0776 1.0247 22 1 -0.3633 0.9263 -0.4452 23 1 -0.3634 -0.8486 -0.5796 24 1 5.0118 2.3277 0.9493 25 1 1.6084 -2.0283 0.5146 26 1 3.1499 -1.1382 0.5143 27 1 2.8950 0.2662 -2.1802 28 1 4.3089 -0.6201 -1.5596 29 1 2.7762 -1.2444 -4.1254 30 1 4.3938 -0.5086 -4.0218 31 1 3.5144 -5.5972 -2.4434 32 1 4.3875 -5.1256 -3.9207 33 1 5.0830 -4.7640 -2.3226 34 1 1.6299 -2.6362 -3.6844 35 1 2.3711 -3.8831 -4.7159 36 1 1.4979 -4.3546 -3.2385 37 1 4.0376 -3.0534 -0.8625 38 1 2.4385 -3.8229 -1.0062 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207360697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:10 Heat of formation + Delta-G solvation = -54.968073 kcal Electronic energy + Delta-G solvation = -17332.155636 eV Core-core repulsion = 14788.202835 eV Total energy + Delta-G solvation = -2543.952801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99029 -37.97986 -34.75812 -34.24565 -33.45990 -29.73602 -28.23580 -28.12541 -27.20774 -24.38587 -23.19795 -21.77252 -20.04904 -18.72852 -17.38884 -17.06216 -16.56431 -15.93448 -15.81534 -15.35466 -15.21069 -14.57900 -14.35115 -14.09861 -13.90506 -13.45715 -13.20020 -12.92758 -12.84563 -12.75927 -12.58038 -12.45751 -12.32621 -12.22120 -11.97176 -11.84640 -11.48292 -11.21062 -10.85203 -10.59865 -10.29045 -8.70236 -8.18652 -5.53758 1.26929 1.36690 1.46891 2.41626 2.89942 3.04917 3.44330 3.86318 3.91991 3.94364 4.08440 4.25863 4.37713 4.50429 4.57047 4.65599 4.70660 4.71930 4.75889 4.84756 4.86079 4.92714 4.95586 5.04170 5.11709 5.12890 5.13964 5.28487 5.30084 5.44652 5.54485 5.64580 5.96726 6.17997 6.42921 7.01926 7.66205 8.09200 9.00821 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.009510 C = 0.009174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.451083 B = 2943.543007 C = 3051.509028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.625 5.625 3 C -0.245 4.245 4 H 0.042 0.958 5 C -0.011 4.011 6 N -0.943 5.943 7 Si 0.930 3.070 8 H -0.281 1.281 9 H -0.310 1.310 10 H -0.262 1.262 11 C 0.137 3.863 12 C -0.093 4.093 13 H 0.078 0.922 14 C -0.124 4.124 15 C 0.067 3.933 16 O -0.396 6.396 17 C 0.103 3.897 18 C -0.133 4.133 19 C -0.171 4.171 20 C -0.135 4.135 21 H 0.012 0.988 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.260 0.740 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.563 -14.769 -6.501 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.350 5.350 3 C -0.375 4.375 4 H 0.060 0.940 5 C -0.208 4.208 6 N -0.587 5.587 7 Si 0.760 3.240 8 H -0.208 1.208 9 H -0.239 1.239 10 H -0.187 1.187 11 C 0.012 3.988 12 C -0.114 4.114 13 H 0.096 0.904 14 C -0.162 4.162 15 C -0.010 4.010 16 O -0.316 6.316 17 C 0.064 3.936 18 C -0.190 4.190 19 C -0.229 4.229 20 C -0.173 4.173 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.292 -14.734 -6.517 16.672 hybrid contribution 0.438 0.466 1.099 1.271 sum -3.854 -14.268 -5.418 15.741 Atomic orbital electron populations 1.21176 0.82421 1.00289 0.98223 1.44201 1.02226 1.01512 1.87068 1.18539 1.05800 0.91382 1.21793 0.93990 1.25915 0.97135 0.97936 0.99765 1.69977 1.09471 1.38465 1.40768 0.86057 0.77999 0.78605 0.81357 1.20824 1.23864 1.18656 1.21294 0.95093 0.87172 0.95224 1.21634 0.98298 0.93812 0.97613 0.90394 1.21875 0.98487 0.99753 0.96083 1.22565 0.98764 0.83863 0.95774 1.87880 1.43655 1.18389 1.81675 1.21703 0.91324 0.89177 0.91405 1.21766 1.00677 0.93543 1.03018 1.22379 0.96888 1.02862 1.00728 1.22230 1.00727 0.96989 0.97373 0.97012 0.94043 0.92296 0.93110 0.91988 0.95574 0.91988 0.95682 0.91819 0.89514 0.88947 0.91347 0.92966 0.92642 0.91439 0.89701 0.93470 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.65 10.70 127.77 1.37 6.02 16 2 N -0.63 -28.97 2.35 -726.92 -1.71 -30.68 16 3 C -0.25 -13.68 7.92 84.03 0.67 -13.02 16 4 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 5 C -0.01 -0.62 5.30 84.86 0.45 -0.17 16 6 N -0.94 -58.81 13.97 21.65 0.30 -58.50 16 7 Si 0.93 47.10 25.08 68.60 1.72 48.82 16 8 H -0.28 -13.83 6.68 99.48 0.66 -13.16 16 9 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 10 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 11 C 0.14 5.70 4.04 86.38 0.35 6.05 16 12 C -0.09 -3.34 2.17 -10.67 -0.02 -3.36 16 13 H 0.08 2.58 6.63 -2.39 -0.02 2.56 16 14 C -0.12 -5.13 4.87 30.68 0.15 -4.98 16 15 C 0.07 2.26 6.52 72.01 0.47 2.73 16 16 O -0.40 -13.16 10.23 -148.98 -1.52 -14.68 16 17 C 0.10 2.75 1.11 -10.76 -0.01 2.74 16 18 C -0.13 -2.83 8.85 71.98 0.64 -2.19 16 19 C -0.17 -3.75 7.94 71.98 0.57 -3.18 16 20 C -0.13 -4.04 4.21 30.68 0.13 -3.91 16 21 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 22 H 0.04 1.56 8.00 -2.39 -0.02 1.55 16 23 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.06 2.24 8.07 -2.39 -0.02 2.23 16 26 H 0.03 1.24 3.38 -2.38 -0.01 1.23 16 27 H 0.06 2.96 6.58 -2.39 -0.02 2.95 16 28 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.91 6.35 -2.39 -0.02 1.89 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.34 4.98 -2.38 -0.01 1.32 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -65.34 286.03 4.51 -60.83 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.97 Total: 7.49 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 4.75 Total: -13.28 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -1.40 Total: -89.18 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.52 Total: -14.68 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.72 Total: 48.82 kcal Total: -65.34 4.51 -60.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207360697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.859 kcal (2) G-P(sol) polarization free energy of solvation -65.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds