Wall clock time and date at job start Sun Mar 29 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47145 * 179.97438 * 5 4 3 7 7 C 1.42902 * 114.00186 * 179.97438 * 6 5 4 8 8 H 1.09006 * 110.63877 * 333.13926 * 7 6 5 9 9 C 1.55162 * 110.72066 * 209.99976 * 7 6 5 10 10 C 1.54913 * 101.58015 * 206.13517 * 9 7 6 11 11 N 1.47419 * 104.83219 * 37.00548 * 10 9 7 12 12 C 1.36941 * 125.64718 * 155.83460 * 11 10 9 13 13 H 1.08002 * 120.00298 * 180.02562 * 12 11 10 14 14 C 1.38814 * 119.99895 * 0.02792 * 12 11 10 15 15 N 1.31615 * 119.99963 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99791 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47030 * 90.00275 * 16 14 12 18 18 H 1.48499 * 109.46866 * 209.99785 * 16 14 12 19 19 H 1.48498 * 109.47358 * 329.99888 * 16 14 12 20 20 C 1.47023 * 108.70668 * 335.87545 * 11 10 9 21 21 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 25 25 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 27 27 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 28 28 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 30 30 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 31 31 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 32 32 H 1.09001 * 110.99802 * 324.20441 * 9 7 6 33 33 H 1.08993 * 111.00294 * 88.06064 * 9 7 6 34 34 H 1.08996 * 110.36687 * 155.84988 * 10 9 7 35 35 H 1.09005 * 110.35992 * 278.17057 * 10 9 7 36 36 H 0.96996 * 119.99885 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.87964 * 241.64007 * 20 11 10 38 38 H 1.08997 * 109.88594 * 120.47570 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 8 5.5090 2.8848 0.0000 7 6 6.0904 4.1902 0.0000 8 1 5.4153 4.9114 -0.4609 9 6 7.4618 4.1805 -0.7256 10 6 8.1790 5.3765 -0.0511 11 7 7.7486 5.3286 1.3581 12 6 8.4348 5.8538 2.4204 13 1 8.0335 5.7660 3.4192 14 6 9.6463 6.4993 2.2135 15 7 10.1351 6.6068 0.9962 16 14 10.5819 7.2163 3.6625 17 1 11.5055 6.1912 4.2115 18 1 11.3633 8.3961 3.2121 19 1 9.6209 7.6317 4.7156 20 6 6.4612 4.6228 1.4342 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9284 0.8891 29 1 3.9329 0.9286 -0.8908 30 1 3.7164 3.3992 -0.8896 31 1 3.7171 3.3982 0.8904 32 1 7.9959 3.2488 -0.5388 33 1 7.3391 4.3511 -1.7951 34 1 9.2604 5.2592 -0.1218 35 1 7.8674 6.3141 -0.5113 36 1 10.9818 7.0575 0.8516 37 1 5.6954 5.2901 1.8298 38 1 6.5569 3.7449 2.0731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224661661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:11 Heat of formation + Delta-G solvation = -45.322157 kcal Electronic energy + Delta-G solvation = -15716.091955 eV Core-core repulsion = 13172.557432 eV Total energy + Delta-G solvation = -2543.534523 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.40479 -36.49455 -35.32297 -32.30352 -31.14288 -29.11315 -27.12907 -25.84389 -24.21955 -21.93867 -21.19079 -20.11049 -20.01426 -16.92635 -16.46654 -16.03562 -14.87516 -14.71035 -14.37054 -14.11186 -13.69553 -13.36857 -12.94956 -12.65440 -12.36607 -11.82184 -11.61775 -11.57524 -11.34675 -11.09965 -10.98614 -10.88906 -10.80570 -10.72813 -10.57552 -10.19164 -10.09105 -9.73694 -9.50039 -9.01584 -8.62832 -6.80850 -5.62778 -3.04569 3.42338 3.46743 3.49047 3.92467 4.52207 4.74376 4.79834 4.92111 5.09026 5.25993 5.41965 5.42842 5.47547 5.52400 5.55548 5.60311 5.66686 5.74521 5.81069 5.85510 5.88868 5.95350 6.01703 6.21359 6.23836 6.39852 6.58465 6.63804 6.71470 6.78086 7.52394 7.65343 7.72510 7.88428 8.38441 9.24421 9.85176 10.50051 11.41413 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.062185 B = 0.004217 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.157812 B = 6637.444341 C = 6952.064888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.118 4.118 5 C 0.061 3.939 6 O -0.380 6.380 7 C 0.076 3.924 8 H 0.062 0.938 9 C -0.139 4.139 10 C 0.152 3.848 11 N -0.603 5.603 12 C -0.221 4.221 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.924 5.924 16 Si 0.916 3.084 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.118 3.882 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.013 0.987 36 H 0.252 0.748 37 H 0.019 0.981 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 -9.531 -3.902 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.156 4.156 5 C -0.016 4.016 6 O -0.299 6.299 7 C 0.018 3.982 8 H 0.080 0.920 9 C -0.178 4.178 10 C 0.027 3.973 11 N -0.330 5.330 12 C -0.349 4.349 13 H 0.095 0.905 14 C -0.208 4.208 15 N -0.573 5.573 16 Si 0.747 3.253 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.207 1.207 20 C -0.008 4.008 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.031 0.969 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.623 -9.575 -3.852 17.899 hybrid contribution 0.227 0.703 0.742 1.048 sum -14.396 -8.871 -3.110 17.194 Atomic orbital electron populations 1.21780 0.95990 1.01472 1.01790 1.21516 0.95672 0.96822 1.02184 1.21539 0.94827 0.96972 1.02201 1.21524 0.94739 0.96116 1.03217 1.22481 0.82320 0.97093 0.99707 1.87910 1.18418 1.28536 1.95000 1.23230 0.94897 0.83157 0.96913 0.92023 1.23167 0.94485 1.01930 0.98228 1.21957 1.01583 0.91282 0.82430 1.44402 1.19100 1.65577 1.03902 1.19103 1.00617 1.28449 0.86779 0.90455 1.24800 0.97957 1.01135 0.96897 1.69782 1.20714 1.48279 1.18484 0.86043 0.79733 0.78359 0.81197 1.21557 1.21640 1.20744 1.21678 0.89343 0.95316 0.94472 0.92878 0.92752 0.92808 0.91977 0.91912 0.91829 0.91940 0.91186 0.91323 0.93899 0.93656 0.91177 0.92092 0.87200 0.96889 0.93704 0.96277 0.94880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.15 0.37 -0.73 16 2 C -0.12 -1.02 5.93 -26.74 -0.16 -1.18 16 3 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 4 C -0.12 -1.36 5.58 -26.73 -0.15 -1.51 16 5 C 0.06 0.85 5.77 37.16 0.21 1.06 16 6 O -0.38 -6.85 10.07 -35.23 -0.35 -7.21 16 7 C 0.08 1.48 3.45 -24.90 -0.09 1.40 16 8 H 0.06 1.11 7.82 -51.93 -0.41 0.71 16 9 C -0.14 -2.88 6.81 -24.58 -0.17 -3.05 16 10 C 0.15 3.86 5.89 -2.53 -0.01 3.85 16 11 N -0.60 -16.31 3.39 -170.07 -0.58 -16.89 16 12 C -0.22 -6.40 10.27 -15.06 -0.15 -6.55 16 13 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 14 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 15 N -0.92 -27.47 10.09 55.49 0.56 -26.91 16 16 Si 0.92 22.47 29.55 -169.99 -5.02 17.45 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.12 2.69 7.02 -3.07 -0.02 2.67 16 21 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.11 3.09 5.87 -51.93 -0.31 2.79 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -30.64 305.76 -8.21 -38.85 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -7.02 Total: -4.18 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.40 Total: -5.72 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.02 Total: -43.80 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.35 Total: -7.21 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.64 -8.21 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224661661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.472 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds