Wall clock time and date at job start Sun Mar 29 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47145 * 179.97438 * 5 4 3 7 7 C 1.42902 * 114.00186 * 179.97438 * 6 5 4 8 8 H 1.09006 * 110.63877 * 333.13926 * 7 6 5 9 9 C 1.55162 * 110.72066 * 209.99976 * 7 6 5 10 10 C 1.54913 * 101.58015 * 206.13517 * 9 7 6 11 11 N 1.47419 * 104.83219 * 37.00548 * 10 9 7 12 12 C 1.36941 * 125.64718 * 155.83460 * 11 10 9 13 13 H 1.08002 * 120.00298 * 180.02562 * 12 11 10 14 14 C 1.38814 * 119.99895 * 0.02792 * 12 11 10 15 15 N 1.31615 * 119.99963 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99791 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47030 * 90.00275 * 16 14 12 18 18 H 1.48499 * 109.46866 * 209.99785 * 16 14 12 19 19 H 1.48498 * 109.47358 * 329.99888 * 16 14 12 20 20 C 1.47023 * 108.70668 * 335.87545 * 11 10 9 21 21 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 25 25 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 26 26 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 27 27 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 28 28 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 29 29 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 30 30 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 31 31 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 32 32 H 1.09001 * 110.99802 * 324.20441 * 9 7 6 33 33 H 1.08993 * 111.00294 * 88.06064 * 9 7 6 34 34 H 1.08996 * 110.36687 * 155.84988 * 10 9 7 35 35 H 1.09005 * 110.35992 * 278.17057 * 10 9 7 36 36 H 0.96996 * 119.99885 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.87964 * 241.64007 * 20 11 10 38 38 H 1.08997 * 109.88594 * 120.47570 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 8 5.5090 2.8848 0.0000 7 6 6.0904 4.1902 0.0000 8 1 5.4153 4.9114 -0.4609 9 6 7.4618 4.1805 -0.7256 10 6 8.1790 5.3765 -0.0511 11 7 7.7486 5.3286 1.3581 12 6 8.4348 5.8538 2.4204 13 1 8.0335 5.7660 3.4192 14 6 9.6463 6.4993 2.2135 15 7 10.1351 6.6068 0.9962 16 14 10.5819 7.2163 3.6625 17 1 11.5055 6.1912 4.2115 18 1 11.3633 8.3961 3.2121 19 1 9.6209 7.6317 4.7156 20 6 6.4612 4.6228 1.4342 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 3.9337 0.9284 0.8891 29 1 3.9329 0.9286 -0.8908 30 1 3.7164 3.3992 -0.8896 31 1 3.7171 3.3982 0.8904 32 1 7.9959 3.2488 -0.5388 33 1 7.3391 4.3511 -1.7951 34 1 9.2604 5.2592 -0.1218 35 1 7.8674 6.3141 -0.5113 36 1 10.9818 7.0575 0.8516 37 1 5.6954 5.2901 1.8298 38 1 6.5569 3.7449 2.0731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224661661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:11 Heat of formation + Delta-G solvation = -62.914147 kcal Electronic energy + Delta-G solvation = -15716.854801 eV Core-core repulsion = 13172.557432 eV Total energy + Delta-G solvation = -2544.297369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94287 -37.89520 -36.42543 -34.22856 -32.18791 -30.99449 -28.88032 -26.96968 -26.07925 -22.85881 -22.09801 -22.03424 -21.52752 -18.98705 -17.91654 -16.97075 -16.76341 -16.19959 -15.75090 -15.41620 -15.03099 -14.49461 -14.29361 -13.95102 -13.67989 -13.60417 -13.18457 -12.97682 -12.70168 -12.56642 -12.42702 -12.10833 -12.02813 -11.93719 -11.87526 -11.77211 -11.52958 -11.38921 -11.30873 -10.77561 -10.45216 -8.93632 -7.80087 -5.25805 1.46138 1.48903 1.57582 2.45950 2.67146 3.30282 3.69058 3.82098 3.94282 4.01380 4.11137 4.16826 4.19251 4.30722 4.46932 4.54240 4.62309 4.70615 4.74236 4.85338 4.88953 4.97230 5.01348 5.03580 5.07394 5.12448 5.22165 5.33851 5.42635 5.44313 5.51323 5.58472 5.75597 6.26028 6.37125 7.07360 7.73373 8.37362 9.22195 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.062185 B = 0.004217 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.157812 B = 6637.444341 C = 6952.064888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.113 4.113 5 C 0.052 3.948 6 O -0.392 6.392 7 C 0.092 3.908 8 H 0.083 0.917 9 C -0.127 4.127 10 C 0.154 3.846 11 N -0.626 5.626 12 C -0.245 4.245 13 H 0.080 0.920 14 C -0.067 4.067 15 N -0.949 5.949 16 Si 0.986 3.014 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.270 1.270 20 C 0.114 3.886 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.078 0.922 35 H -0.003 1.003 36 H 0.249 0.751 37 H 0.026 0.974 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.299 -9.974 -3.958 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.151 4.151 5 C -0.024 4.024 6 O -0.311 6.311 7 C 0.034 3.966 8 H 0.101 0.899 9 C -0.165 4.165 10 C 0.029 3.971 11 N -0.353 5.353 12 C -0.374 4.374 13 H 0.097 0.903 14 C -0.259 4.259 15 N -0.599 5.599 16 Si 0.813 3.187 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.195 1.195 20 C -0.012 4.012 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.015 0.985 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -16.042 -10.039 -3.909 19.324 hybrid contribution 0.609 0.804 0.761 1.263 sum -15.434 -9.236 -3.147 18.259 Atomic orbital electron populations 1.21772 0.95123 1.02032 1.02024 1.21515 0.96425 0.96080 1.02196 1.21510 0.92983 0.97826 1.02686 1.21512 0.96259 0.94454 1.02846 1.22787 0.80054 0.98923 1.00622 1.87895 1.20973 1.27354 1.94913 1.22961 0.94826 0.84450 0.94376 0.89888 1.22989 0.94583 0.99235 0.99726 1.21750 1.00256 0.92609 0.82449 1.44716 1.20672 1.65840 1.04102 1.19476 1.01353 1.28913 0.87649 0.90261 1.25697 0.98813 1.01690 0.99695 1.70029 1.20793 1.48697 1.20334 0.84978 0.78255 0.77322 0.78143 1.21104 1.21650 1.19487 1.21836 0.87852 0.94624 0.96856 0.92214 0.92685 0.92420 0.91775 0.92171 0.91674 0.91121 0.92043 0.91255 0.92189 0.93457 0.91919 0.88960 0.90427 0.98489 0.94087 0.95597 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.79 5.93 30.59 0.18 -1.61 16 3 C -0.11 -1.82 5.21 30.59 0.16 -1.66 16 4 C -0.11 -2.38 5.58 30.59 0.17 -2.21 16 5 C 0.05 1.33 5.77 71.98 0.42 1.75 16 6 O -0.39 -13.40 10.07 -148.98 -1.50 -14.90 16 7 C 0.09 3.45 3.45 31.78 0.11 3.56 16 8 H 0.08 2.77 7.82 -2.38 -0.02 2.75 16 9 C -0.13 -5.11 6.81 31.99 0.22 -4.89 16 10 C 0.15 7.93 5.89 86.86 0.51 8.44 16 11 N -0.63 -34.24 3.39 -691.99 -2.35 -36.59 16 12 C -0.25 -14.35 10.27 84.03 0.86 -13.48 16 13 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 14 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 15 N -0.95 -57.56 10.09 21.65 0.22 -57.34 16 16 Si 0.99 46.44 29.55 68.60 2.03 48.46 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 C 0.11 5.14 7.02 86.73 0.61 5.75 16 21 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.08 4.50 5.87 -2.39 -0.01 4.49 16 35 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 36 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.02 1.11 8.06 -2.39 -0.02 1.09 16 Total: -1.00 -65.56 305.76 3.80 -61.76 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.98 Total: 7.51 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 4.42 Total: -8.91 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -2.13 Total: -93.93 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.50 Total: -14.90 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -65.56 3.80 -61.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224661661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.150 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds