Wall clock time and date at job start Sun Mar 29 2020 22:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 O 1.42900 * 109.47493 * 300.00486 * 5 2 1 8 8 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 9 9 N 1.46896 * 109.47501 * 180.02562 * 8 5 2 10 10 C 1.47480 * 111.00020 * 265.97439 * 9 8 5 11 11 C 1.53512 * 87.92944 * 221.29516 * 10 9 8 12 12 C 1.50697 * 114.34508 * 139.68463 * 11 10 9 13 13 H 1.08004 * 119.99784 * 266.07629 * 12 11 10 14 14 C 1.37879 * 120.00407 * 86.07213 * 12 11 10 15 15 N 1.31513 * 120.00124 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99698 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47249 * 90.00177 * 16 14 12 18 18 H 1.48507 * 109.47152 * 210.00026 * 16 14 12 19 19 H 1.48498 * 109.47372 * 329.99854 * 16 14 12 20 20 C 1.47475 * 111.00337 * 170.00027 * 9 8 5 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 0.96698 * 114.00087 * 59.99158 * 7 5 2 31 31 H 1.09000 * 109.46866 * 300.00212 * 8 5 2 32 32 H 1.08996 * 109.47261 * 59.99820 * 8 5 2 33 33 H 1.08997 * 113.47275 * 336.05675 * 10 9 8 34 34 H 1.09000 * 113.47980 * 106.52703 * 10 9 8 35 35 H 1.09002 * 114.16697 * 272.37329 * 11 10 9 36 36 H 0.97002 * 119.99794 * 179.97438 * 15 14 12 37 37 H 1.09004 * 113.47317 * 253.47194 * 20 9 8 38 38 H 1.08996 * 113.47924 * 23.87281 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 8 1.5637 -2.0685 -1.2493 8 6 1.5300 0.0000 -2.4985 9 7 2.0192 -0.6927 -3.6979 10 6 3.2713 -0.0850 -4.1856 11 6 2.7257 -0.2400 -5.6121 12 6 3.0108 0.9308 -6.5169 13 1 2.2809 1.7194 -6.6258 14 6 4.2034 0.9954 -7.2058 15 7 4.4523 2.0175 -7.9951 16 14 5.4655 -0.3688 -7.0181 17 1 5.2177 -1.4166 -8.0407 18 1 6.8292 0.1897 -7.2019 19 1 5.3531 -0.9640 -5.6622 20 6 1.3609 -0.1759 -4.9122 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6767 -0.2075 2.1393 30 1 0.5997 -2.1449 -1.2493 31 1 0.4400 0.0000 -2.4985 32 1 1.8933 1.0277 -2.4985 33 1 3.3978 0.9535 -3.8796 34 1 4.1543 -0.6934 -3.9899 35 1 2.9465 -1.2032 -6.0721 36 1 5.2915 2.0631 -8.4794 37 1 0.6249 -0.8614 -5.3323 38 1 0.9767 0.8379 -4.7999 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253715521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:19 Heat of formation + Delta-G solvation = -53.644725 kcal Electronic energy + Delta-G solvation = -16597.883763 eV Core-core repulsion = 14053.988346 eV Total energy + Delta-G solvation = -2543.895417 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11678 -39.44259 -35.57421 -34.75264 -32.09767 -28.88771 -28.26146 -27.83279 -26.68469 -25.56391 -22.78234 -20.48748 -19.96203 -19.14616 -17.49324 -16.72772 -16.64950 -16.41292 -15.69151 -15.44175 -15.10755 -14.75647 -14.44771 -14.11155 -13.46397 -13.44078 -13.21038 -13.00021 -12.85214 -12.82294 -12.57001 -12.16026 -11.98419 -11.87854 -11.76703 -11.66784 -11.48689 -11.25031 -11.10142 -10.66950 -10.51894 -9.65065 -8.30922 -6.35682 1.36590 1.39015 1.51874 2.36430 3.02495 3.11171 3.60896 3.70714 3.86994 3.99337 4.06806 4.19094 4.24225 4.37650 4.53099 4.57401 4.69337 4.71134 4.78320 4.81709 4.88604 4.90481 4.95354 5.01839 5.03614 5.06653 5.14713 5.30524 5.38366 5.46021 5.48125 5.54282 5.62643 6.27422 6.29558 6.69726 6.93417 7.31421 8.85034 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041867 B = 0.006274 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.618016 B = 4461.489162 C = 4505.559157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.132 4.132 5 C 0.135 3.865 6 H 0.072 0.928 7 O -0.560 6.560 8 C -0.015 4.015 9 N -0.468 5.468 10 C -0.002 4.002 11 C -0.015 4.015 12 C -0.513 4.513 13 H 0.035 0.965 14 C 0.018 3.982 15 N -0.947 5.947 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.241 1.241 20 C 0.017 3.983 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.378 0.622 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.267 0.733 37 H 0.081 0.919 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.744 -4.960 18.118 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.202 4.202 4 C -0.189 4.189 5 C 0.075 3.925 6 H 0.091 0.909 7 O -0.367 6.367 8 C -0.144 4.144 9 N -0.190 5.190 10 C -0.132 4.132 11 C -0.034 4.034 12 C -0.551 4.551 13 H 0.053 0.947 14 C -0.180 4.180 15 N -0.587 5.587 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.164 1.164 20 C -0.112 4.112 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.227 0.773 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.040 -5.721 18.220 20.030 hybrid contribution 0.234 1.056 -0.638 1.256 sum -5.806 -4.665 17.583 19.095 Atomic orbital electron populations 1.21942 0.93220 1.02562 1.02599 1.21176 0.97201 0.95887 0.95349 1.21920 1.00933 0.95013 1.02375 1.21743 1.00511 1.00454 0.96215 1.21685 0.97729 0.81724 0.91351 0.90948 1.86560 1.27269 1.26015 1.96848 1.23569 1.01306 0.96777 0.92750 1.68829 1.03947 1.45185 1.01055 1.24190 0.94239 0.96985 0.97748 1.20494 0.94813 0.96063 0.92072 1.21135 1.02515 1.05900 1.25588 0.94652 1.25859 1.00325 0.97946 0.93885 1.70049 1.25839 1.32557 1.30241 0.85842 0.77724 0.79484 0.80558 1.19531 1.21274 1.16407 1.23660 0.97697 0.98279 0.91585 0.92568 0.91151 0.91567 0.90958 0.93113 0.92942 0.92290 0.93544 0.91432 0.77319 0.89510 0.93300 0.92651 0.92037 0.92685 0.92449 0.90072 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 7.82 71.98 0.56 -1.75 16 2 C -0.10 -1.85 0.63 -52.18 -0.03 -1.88 16 3 C -0.15 -2.83 8.12 71.98 0.58 -2.24 16 4 C -0.13 -2.37 8.33 71.98 0.60 -1.77 16 5 C 0.13 3.50 2.57 30.60 0.08 3.57 16 6 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 7 O -0.56 -14.95 12.49 -148.98 -1.86 -16.81 16 8 C -0.02 -0.44 3.77 86.31 0.33 -0.12 16 9 N -0.47 -17.27 6.20 -927.96 -5.75 -23.02 16 10 C 0.00 -0.09 6.70 83.57 0.56 0.47 16 11 C -0.02 -0.71 2.95 -11.20 -0.03 -0.74 16 12 C -0.51 -29.08 9.38 25.60 0.24 -28.84 16 13 H 0.04 2.21 8.06 -2.91 -0.02 2.18 16 14 C 0.02 1.02 5.47 84.66 0.46 1.48 16 15 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 16 Si 0.94 44.32 27.14 68.60 1.86 46.18 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.24 -10.62 5.68 99.48 0.56 -10.06 16 20 C 0.02 0.66 7.24 83.57 0.61 1.26 16 21 H 0.06 0.94 6.43 -2.39 -0.02 0.93 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 0.92 6.78 -2.38 -0.02 0.91 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.11 6.43 -2.39 -0.02 1.09 16 27 H 0.06 1.09 7.68 -2.39 -0.02 1.07 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.38 7.60 7.33 -74.06 -0.54 7.05 16 31 H 0.09 2.24 6.37 -2.39 -0.02 2.22 16 32 H 0.05 1.50 5.59 -2.39 -0.01 1.48 16 33 H 0.06 2.40 7.38 -2.39 -0.02 2.38 16 34 H 0.06 2.60 7.11 -2.39 -0.02 2.59 16 35 H 0.06 2.60 7.04 -2.39 -0.02 2.58 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 Total: -1.00 -64.48 292.02 -1.16 -65.63 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.34 Total: 17.09 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 3.95 Total: -30.57 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -5.45 Total: -81.52 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -1.86 Total: -16.81 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.86 Total: 46.18 kcal Total: -64.48 -1.16 -65.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253715521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.987 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds