Wall clock time and date at job start Sun Mar 29 2020 22:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47445 * 2 1 4 4 C 1.52996 * 109.47165 * 239.99895 * 2 1 3 5 5 C 1.53002 * 109.47415 * 119.99874 * 2 1 3 6 6 H 1.09002 * 109.47070 * 300.00053 * 5 2 1 7 7 O 1.42898 * 109.47113 * 179.97438 * 5 2 1 8 8 C 1.52997 * 109.46817 * 59.99873 * 5 2 1 9 9 N 1.46905 * 109.47150 * 184.99872 * 8 5 2 10 10 C 1.47478 * 111.00033 * 265.97063 * 9 8 5 11 11 C 1.53504 * 87.93251 * 221.29519 * 10 9 8 12 12 C 1.50702 * 114.34494 * 139.68491 * 11 10 9 13 13 H 1.07994 * 120.00621 * 266.08020 * 12 11 10 14 14 C 1.37879 * 119.99820 * 86.07419 * 12 11 10 15 15 N 1.31516 * 119.99855 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00097 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46740 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46938 * 120.00406 * 16 14 12 19 19 H 1.48493 * 109.47258 * 240.00389 * 16 14 12 20 20 C 1.47477 * 110.99802 * 170.00110 * 9 8 5 21 21 H 1.09002 * 109.47045 * 300.00058 * 1 2 3 22 22 H 1.08998 * 109.47171 * 59.99399 * 1 2 3 23 23 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47165 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46726 * 300.00265 * 3 2 1 26 26 H 1.09002 * 109.46589 * 59.99669 * 3 2 1 27 27 H 1.09004 * 109.47552 * 300.00012 * 4 2 1 28 28 H 1.09001 * 109.46993 * 60.00298 * 4 2 1 29 29 H 1.09004 * 109.47298 * 179.97438 * 4 2 1 30 30 H 0.96698 * 113.99898 * 299.99778 * 7 5 2 31 31 H 1.09001 * 109.47630 * 305.00128 * 8 5 2 32 32 H 1.09004 * 109.47346 * 65.00258 * 8 5 2 33 33 H 1.08996 * 113.47855 * 336.06993 * 10 9 8 34 34 H 1.09004 * 113.47481 * 106.53150 * 10 9 8 35 35 H 1.09007 * 114.17736 * 272.37958 * 11 10 9 36 36 H 0.97007 * 119.99793 * 179.97438 * 15 14 12 37 37 H 1.09002 * 113.48017 * 253.46841 * 20 9 8 38 38 H 1.08994 * 113.48101 * 23.87832 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7212 1.2493 6 1 1.6767 -0.2074 2.1392 7 8 3.4690 -0.7217 1.2489 8 6 1.5300 -2.1637 1.2493 9 7 1.9187 -2.8205 2.5045 10 6 3.1888 -3.5532 2.3463 11 6 2.5744 -4.6866 3.1796 12 6 2.9028 -6.0710 2.6830 13 1 2.2262 -6.5785 2.0113 14 6 4.0671 -6.6899 3.0860 15 7 4.8909 -6.0721 3.9042 16 14 4.4745 -8.4057 2.4700 17 1 3.3938 -8.8769 1.5670 18 1 5.7602 -8.3727 1.7275 19 1 4.5937 -9.3311 3.6251 20 6 1.2480 -4.1261 2.6474 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7490 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 3.8620 -1.1637 0.4838 31 1 0.4437 -2.1651 1.1597 32 1 1.9646 -2.7028 0.4074 33 1 3.4007 -3.8375 1.3157 34 1 4.0344 -3.0663 2.8322 35 1 2.7076 -4.5725 4.2554 36 1 5.7099 -6.5077 4.1881 37 1 0.4487 -4.1249 3.3886 38 1 0.9410 -4.5630 1.6973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253715538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:21 Heat of formation + Delta-G solvation = -33.702710 kcal Electronic energy + Delta-G solvation = -16594.833991 eV Core-core repulsion = 14051.803325 eV Total energy + Delta-G solvation = -2543.030666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.57662 -37.94952 -34.50582 -32.66736 -30.23985 -27.41458 -27.29922 -26.44509 -24.66634 -24.02276 -21.41963 -19.07558 -18.47327 -16.78430 -16.01947 -15.44521 -15.05094 -14.70464 -14.28317 -14.20475 -13.64062 -13.39799 -12.81262 -12.37962 -12.14624 -11.93843 -11.81453 -11.76750 -11.51153 -11.26688 -11.08737 -10.99263 -10.82708 -10.58061 -10.33735 -10.17498 -9.96162 -9.30398 -9.08075 -8.87853 -8.40924 -7.89219 -6.02810 -4.07384 3.28458 3.36738 3.40032 4.40066 4.50238 4.66459 4.80219 4.98803 5.11051 5.25897 5.38250 5.49380 5.56089 5.62605 5.65892 5.75206 5.83952 5.87397 5.89085 6.02051 6.05375 6.15648 6.22133 6.35300 6.40587 6.46018 6.56260 6.71726 6.81229 7.25699 7.28721 7.75756 7.94954 7.96293 8.15355 8.40961 8.95937 9.57316 11.06732 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046051 B = 0.005846 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.869486 B = 4788.191688 C = 4835.084520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.134 4.134 4 C -0.149 4.149 5 C 0.128 3.872 6 H 0.099 0.901 7 O -0.551 6.551 8 C -0.014 4.014 9 N -0.478 5.478 10 C 0.016 3.984 11 C 0.038 3.962 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.008 4.008 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.365 0.635 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.059 0.941 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 10.865 -8.904 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.192 4.192 4 C -0.206 4.206 5 C 0.069 3.931 6 H 0.117 0.883 7 O -0.355 6.355 8 C -0.143 4.143 9 N -0.200 5.200 10 C -0.113 4.113 11 C 0.019 3.981 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.136 4.136 15 N -0.522 5.522 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.137 4.137 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.212 0.788 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.266 11.719 -7.756 15.386 hybrid contribution 0.346 -1.759 -1.675 2.453 sum -5.919 9.960 -9.431 14.939 Atomic orbital electron populations 1.21893 0.94301 1.02086 1.01651 1.21260 0.96170 0.96476 0.96417 1.21765 1.01661 0.94677 1.01074 1.21948 1.01066 1.00614 0.96951 1.21868 0.80740 0.94131 0.96379 0.88336 1.86608 1.19094 1.80587 1.49245 1.23450 1.00510 0.96266 0.94062 1.68811 1.06641 1.16488 1.28100 1.23978 0.92368 0.95415 0.99554 1.20125 0.88511 0.92814 0.96631 1.21068 1.05554 1.00269 1.28509 0.92520 1.25021 0.96378 0.97568 0.94656 1.69990 1.11505 1.37564 1.33176 0.86581 0.78273 0.84673 0.78732 1.19784 1.21004 1.20900 1.24017 1.00024 0.90024 0.99602 0.92482 0.92780 0.92191 0.92030 0.93211 0.92799 0.92164 0.92600 0.92521 0.78759 0.91139 0.93964 0.93446 0.91588 0.91908 0.92935 0.92211 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.13 37.16 0.30 -1.18 16 2 C -0.10 -1.17 0.63 -154.51 -0.10 -1.27 16 3 C -0.13 -1.44 8.33 37.16 0.31 -1.13 16 4 C -0.15 -1.58 7.81 37.16 0.29 -1.29 16 5 C 0.13 1.88 2.54 -26.73 -0.07 1.82 16 6 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 7 O -0.55 -8.89 11.96 -35.23 -0.42 -9.31 16 8 C -0.01 -0.22 3.81 -3.82 -0.01 -0.24 16 9 N -0.48 -9.87 6.31 -244.67 -1.54 -11.42 16 10 C 0.02 0.37 6.65 -7.56 -0.05 0.32 16 11 C 0.04 0.98 3.76 -91.24 -0.34 0.64 16 12 C -0.52 -14.20 8.83 -34.44 -0.30 -14.50 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 15 N -0.88 -25.87 13.26 55.43 0.74 -25.14 16 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 C -0.01 -0.17 7.24 -7.56 -0.05 -0.22 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.65 6.32 -51.93 -0.33 0.32 16 24 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.59 6.78 -51.93 -0.35 0.23 16 30 H 0.37 5.07 7.33 45.56 0.33 5.40 16 31 H 0.07 1.08 6.11 -51.93 -0.32 0.76 16 32 H 0.04 0.70 5.87 -51.93 -0.30 0.40 16 33 H 0.05 1.10 7.38 -51.93 -0.38 0.72 16 34 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 35 H 0.06 1.77 8.11 -51.92 -0.42 1.35 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.05 7.87 -51.93 -0.41 0.65 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -29.20 296.85 -7.75 -36.95 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.85 Total: 3.62 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.13 Total: -15.31 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.81 Total: -36.56 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.42 Total: -9.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.20 -7.75 -36.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253715538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.250 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds