Wall clock time and date at job start Sun Mar 29 2020 22:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47445 * 2 1 4 4 C 1.52996 * 109.47165 * 239.99895 * 2 1 3 5 5 C 1.53002 * 109.47415 * 119.99874 * 2 1 3 6 6 H 1.09002 * 109.47070 * 300.00053 * 5 2 1 7 7 O 1.42898 * 109.47113 * 179.97438 * 5 2 1 8 8 C 1.52997 * 109.46817 * 59.99873 * 5 2 1 9 9 N 1.46905 * 109.47150 * 184.99872 * 8 5 2 10 10 C 1.47478 * 111.00033 * 265.97063 * 9 8 5 11 11 C 1.53504 * 87.93251 * 221.29519 * 10 9 8 12 12 C 1.50702 * 114.34494 * 139.68491 * 11 10 9 13 13 H 1.07994 * 120.00621 * 266.08020 * 12 11 10 14 14 C 1.37879 * 119.99820 * 86.07419 * 12 11 10 15 15 N 1.31516 * 119.99855 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00097 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46740 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46938 * 120.00406 * 16 14 12 19 19 H 1.48493 * 109.47258 * 240.00389 * 16 14 12 20 20 C 1.47477 * 110.99802 * 170.00110 * 9 8 5 21 21 H 1.09002 * 109.47045 * 300.00058 * 1 2 3 22 22 H 1.08998 * 109.47171 * 59.99399 * 1 2 3 23 23 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47165 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46726 * 300.00265 * 3 2 1 26 26 H 1.09002 * 109.46589 * 59.99669 * 3 2 1 27 27 H 1.09004 * 109.47552 * 300.00012 * 4 2 1 28 28 H 1.09001 * 109.46993 * 60.00298 * 4 2 1 29 29 H 1.09004 * 109.47298 * 179.97438 * 4 2 1 30 30 H 0.96698 * 113.99898 * 299.99778 * 7 5 2 31 31 H 1.09001 * 109.47630 * 305.00128 * 8 5 2 32 32 H 1.09004 * 109.47346 * 65.00258 * 8 5 2 33 33 H 1.08996 * 113.47855 * 336.06993 * 10 9 8 34 34 H 1.09004 * 113.47481 * 106.53150 * 10 9 8 35 35 H 1.09007 * 114.17736 * 272.37958 * 11 10 9 36 36 H 0.97007 * 119.99793 * 179.97438 * 15 14 12 37 37 H 1.09002 * 113.48017 * 253.46841 * 20 9 8 38 38 H 1.08994 * 113.48101 * 23.87832 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7212 1.2493 6 1 1.6767 -0.2074 2.1392 7 8 3.4690 -0.7217 1.2489 8 6 1.5300 -2.1637 1.2493 9 7 1.9187 -2.8205 2.5045 10 6 3.1888 -3.5532 2.3463 11 6 2.5744 -4.6866 3.1796 12 6 2.9028 -6.0710 2.6830 13 1 2.2262 -6.5785 2.0113 14 6 4.0671 -6.6899 3.0860 15 7 4.8909 -6.0721 3.9042 16 14 4.4745 -8.4057 2.4700 17 1 3.3938 -8.8769 1.5670 18 1 5.7602 -8.3727 1.7275 19 1 4.5937 -9.3311 3.6251 20 6 1.2480 -4.1261 2.6474 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7490 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 3.8620 -1.1637 0.4838 31 1 0.4437 -2.1651 1.1597 32 1 1.9646 -2.7028 0.4074 33 1 3.4007 -3.8375 1.3157 34 1 4.0344 -3.0663 2.8322 35 1 2.7076 -4.5725 4.2554 36 1 5.7099 -6.5077 4.1881 37 1 0.4487 -4.1249 3.3886 38 1 0.9410 -4.5630 1.6973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253715538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:21 Heat of formation + Delta-G solvation = -55.086380 kcal Electronic energy + Delta-G solvation = -16595.761257 eV Core-core repulsion = 14051.803325 eV Total energy + Delta-G solvation = -2543.957931 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.04892 -39.34685 -35.61349 -34.72901 -31.81647 -28.61427 -28.25238 -27.76524 -26.50185 -25.69681 -22.92145 -20.55196 -19.91915 -18.70245 -17.35565 -16.86637 -16.49879 -16.35220 -15.77155 -15.61693 -14.88866 -14.66183 -14.26992 -13.77232 -13.36477 -13.25450 -13.11021 -12.99562 -12.89881 -12.79963 -12.59017 -12.35479 -12.22507 -11.93842 -11.76415 -11.62598 -11.36876 -11.10427 -10.85686 -10.59270 -10.42049 -9.60402 -8.14899 -6.26942 1.41614 1.43064 1.55002 2.42258 3.14167 3.20149 3.54502 3.84439 3.86239 4.02928 4.13236 4.26871 4.34446 4.49553 4.55225 4.59940 4.75627 4.76331 4.83148 4.89345 4.91770 4.96620 5.00555 5.04674 5.10159 5.15991 5.29757 5.32487 5.44707 5.49532 5.57474 5.62224 5.84934 6.29562 6.43684 6.82762 6.83161 7.41760 8.95201 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046051 B = 0.005846 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.869486 B = 4788.191688 C = 4835.084520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.132 4.132 4 C -0.148 4.148 5 C 0.131 3.869 6 H 0.085 0.915 7 O -0.570 6.570 8 C -0.012 4.012 9 N -0.482 5.482 10 C 0.033 3.967 11 C 0.016 3.984 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.960 3.040 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.008 3.992 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.374 0.626 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 11.003 -10.781 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 C -0.189 4.189 4 C -0.205 4.205 5 C 0.071 3.929 6 H 0.103 0.897 7 O -0.376 6.376 8 C -0.141 4.141 9 N -0.204 5.204 10 C -0.096 4.096 11 C -0.003 4.003 12 C -0.567 4.567 13 H 0.078 0.922 14 C -0.186 4.186 15 N -0.562 5.562 16 Si 0.785 3.215 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.121 4.121 21 H 0.076 0.924 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.382 11.864 -9.645 16.979 hybrid contribution 0.662 -1.745 -1.066 2.149 sum -6.720 10.119 -10.711 16.195 Atomic orbital electron populations 1.21897 0.93186 1.02169 1.02611 1.21167 0.96954 0.96483 0.94880 1.21744 1.01056 0.94250 1.01899 1.21951 1.01121 1.00314 0.97140 1.21866 0.80117 0.93111 0.97757 0.89733 1.86580 1.20092 1.80817 1.50144 1.23537 1.01731 0.96903 0.91899 1.68737 1.04838 1.15920 1.30890 1.23648 0.92666 0.94643 0.98677 1.20089 0.92174 0.93223 0.94828 1.21390 1.05684 1.01205 1.28441 0.92196 1.25867 0.96244 1.01686 0.94801 1.70124 1.12055 1.39446 1.34596 0.85483 0.78212 0.79565 0.78260 1.18669 1.20564 1.20593 1.23838 0.98312 0.89901 1.00039 0.92446 0.90987 0.92503 0.92985 0.91309 0.93058 0.92776 0.90865 0.92550 0.77789 0.89270 0.93654 0.93327 0.94236 0.95670 0.92867 0.91052 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.13 71.98 0.59 -1.96 16 2 C -0.09 -1.94 0.63 -52.18 -0.03 -1.97 16 3 C -0.13 -2.55 8.33 71.98 0.60 -1.95 16 4 C -0.15 -2.79 7.81 71.98 0.56 -2.22 16 5 C 0.13 3.69 2.54 30.59 0.08 3.77 16 6 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 7 O -0.57 -18.20 11.96 -148.98 -1.78 -19.98 16 8 C -0.01 -0.38 3.81 86.30 0.33 -0.05 16 9 N -0.48 -19.69 6.31 -928.00 -5.85 -25.54 16 10 C 0.03 1.57 6.65 83.57 0.56 2.12 16 11 C 0.02 0.83 3.76 -11.20 -0.04 0.79 16 12 C -0.53 -29.28 8.83 25.60 0.23 -29.06 16 13 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 14 C 0.01 0.74 5.46 84.65 0.46 1.20 16 15 N -0.92 -55.18 13.26 21.45 0.28 -54.90 16 16 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 C 0.01 0.33 7.24 83.57 0.61 0.94 16 21 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.06 6.32 -2.39 -0.02 1.04 16 24 H 0.05 1.10 7.68 -2.39 -0.02 1.08 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.09 6.54 -2.39 -0.02 1.07 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.06 6.78 -2.38 -0.02 1.04 16 30 H 0.37 10.19 7.33 -74.06 -0.54 9.65 16 31 H 0.09 2.50 6.11 -2.39 -0.01 2.49 16 32 H 0.05 1.43 5.87 -2.39 -0.01 1.41 16 33 H 0.05 2.27 7.38 -2.39 -0.02 2.25 16 34 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.03 1.49 8.11 -2.38 -0.02 1.47 16 36 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 37 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.06 2.47 7.87 -2.39 -0.02 2.45 16 Total: -1.00 -62.69 296.85 -0.92 -63.61 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.48 Total: 19.77 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 3.93 Total: -28.39 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -5.57 Total: -80.44 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.78 Total: -19.98 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -62.69 -0.92 -63.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253715538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.521 kcal (2) G-P(sol) polarization free energy of solvation -62.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds