Wall clock time and date at job start Sun Mar 29 2020 21:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00329 * 2 1 4 4 H 1.48504 * 109.47019 * 270.00117 * 3 2 1 5 5 H 1.48499 * 109.47024 * 29.99830 * 3 2 1 6 6 H 1.48497 * 109.47448 * 149.99970 * 3 2 1 7 7 C 1.37882 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99998 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99505 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46779 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00136 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99582 * 4.97591 * 11 10 9 13 13 N 1.34777 * 120.00331 * 184.98398 * 11 10 9 14 14 C 1.46921 * 120.63077 * 174.76826 * 13 11 10 15 15 C 1.53196 * 108.77333 * 126.41418 * 14 13 11 16 16 C 1.53039 * 109.31451 * 54.63340 * 15 14 13 17 17 C 1.53037 * 109.52762 * 298.64524 * 16 15 14 18 18 H 1.09008 * 109.49540 * 301.40565 * 17 16 15 19 19 N 1.46897 * 109.49859 * 181.31163 * 17 16 15 20 20 C 1.46925 * 120.62948 * 354.79084 * 13 11 10 21 21 H 0.97006 * 119.99852 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47223 * 60.00221 * 9 7 2 23 23 H 1.09002 * 109.46843 * 299.99309 * 9 7 2 24 24 H 0.97007 * 120.00183 * 0.02562 * 10 9 7 25 25 H 1.09000 * 109.59190 * 6.62769 * 14 13 11 26 26 H 1.09002 * 109.59064 * 246.20031 * 14 13 11 27 27 H 1.09002 * 109.49733 * 294.67943 * 15 14 13 28 28 H 1.09005 * 109.52468 * 174.60594 * 15 14 13 29 29 H 1.09001 * 109.45580 * 58.65765 * 16 15 14 30 30 H 1.08998 * 109.45947 * 178.63075 * 16 15 14 31 31 H 1.00899 * 111.00298 * 179.97438 * 19 17 16 32 32 H 1.00904 * 110.99777 * 303.95128 * 19 17 16 33 33 H 1.08999 * 109.58930 * 353.37813 * 20 13 11 34 34 H 1.09007 * 109.58967 * 113.80028 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3248 -2.8217 0.0024 12 8 6.1142 -1.9014 0.0929 13 7 5.7749 -4.0882 -0.0980 14 6 7.2132 -4.3645 -0.2143 15 6 7.6127 -5.3646 0.8752 16 6 6.7239 -6.6063 0.7731 17 6 5.2626 -6.2089 0.9942 18 1 5.1569 -5.7415 1.9733 19 7 4.4135 -7.4057 0.9273 20 6 4.8364 -5.2186 -0.0937 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6802 0.8911 23 1 3.8751 -0.6806 -0.8889 24 1 3.3694 -3.3127 0.0021 25 1 7.7747 -3.4393 -0.0847 26 1 7.4256 -4.7889 -1.1956 27 1 7.4849 -4.9052 1.8554 28 1 8.6557 -5.6518 0.7413 29 1 6.8336 -7.0510 -0.2159 30 1 7.0222 -7.3298 1.5318 31 1 3.4432 -7.1692 1.0708 32 1 4.5420 -7.8917 0.0524 33 1 3.8296 -4.8570 0.1154 34 1 4.8549 -5.7127 -1.0652 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357375319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:32 Heat of formation + Delta-G solvation = -31.249540 kcal Electronic energy + Delta-G solvation = -16094.651762 eV Core-core repulsion = 13448.187131 eV Total energy + Delta-G solvation = -2646.464632 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06590 -37.67881 -34.53623 -33.90755 -32.74289 -31.85666 -28.41118 -27.79216 -25.14615 -22.88686 -21.79638 -20.70632 -19.35947 -18.10777 -16.50097 -16.11038 -15.78626 -15.39374 -14.58289 -14.56369 -14.27362 -13.91967 -13.37230 -13.19409 -13.15047 -12.65344 -12.25472 -12.11721 -11.58015 -11.11664 -11.02471 -10.85596 -10.75803 -10.73396 -9.96615 -9.63812 -9.47397 -9.16671 -8.78091 -8.43025 -7.94425 -6.21683 -4.23669 3.05637 3.27555 3.34576 3.43664 3.72222 4.24993 4.34032 4.53808 4.68506 4.74731 4.94604 5.04270 5.14063 5.16639 5.38570 5.48520 5.63797 5.71331 5.83752 5.88802 6.05443 6.20838 6.58532 6.79808 6.92316 7.11180 7.21292 7.23945 7.38139 7.49827 8.24622 8.64168 8.77987 9.17060 9.39726 10.90266 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.040023 B = 0.006484 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.432300 B = 4317.258814 C = 4904.107783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.723 5.723 11 C 0.698 3.302 12 O -0.600 6.600 13 N -0.633 5.633 14 C 0.129 3.871 15 C -0.134 4.134 16 C -0.109 4.109 17 C 0.076 3.924 18 H 0.086 0.914 19 N -0.841 5.841 20 C 0.081 3.919 21 H 0.268 0.732 22 H 0.024 0.976 23 H 0.018 0.982 24 H 0.390 0.610 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.345 0.655 32 H 0.339 0.661 33 H 0.080 0.920 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.116 -13.704 -0.111 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.114 3.886 10 N -0.377 5.377 11 C 0.399 3.601 12 O -0.480 6.480 13 N -0.373 5.373 14 C 0.005 3.995 15 C -0.173 4.173 16 C -0.147 4.147 17 C -0.037 4.037 18 H 0.104 0.896 19 N -0.369 5.369 20 C -0.045 4.045 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.226 0.774 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.099 0.901 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.900 -13.108 0.581 17.713 hybrid contribution -0.580 0.949 -0.895 1.428 sum 11.319 -12.159 -0.314 16.615 Atomic orbital electron populations 1.69883 1.06207 1.27436 1.49508 1.24778 0.94791 0.99174 0.93837 0.86807 0.80642 0.83144 0.79066 1.19846 1.20885 1.18404 1.21075 0.88534 0.95145 1.53308 0.90439 1.19374 0.94847 0.77683 0.96658 1.45571 1.03763 1.11021 1.77369 1.16045 0.83633 0.82280 0.78101 1.90847 1.55436 1.42897 1.58796 1.47182 1.06735 1.04221 1.79143 1.21388 0.80593 0.99958 0.97531 1.21931 0.99376 0.95837 1.00160 1.21510 0.93527 0.97614 1.02074 1.21864 0.93661 0.89277 0.98907 0.89554 1.58968 1.11901 1.24793 1.41264 1.22529 0.93860 0.88741 0.99404 0.92258 0.95799 0.96442 0.77420 0.88804 0.92301 0.91310 0.90657 0.92053 0.91047 0.84172 0.84850 0.90146 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.54 -15.08 9.83 -34.44 -0.34 -15.42 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.24 6.01 4.50 -5.19 -0.02 5.99 16 10 N -0.72 -15.45 5.46 -66.41 -0.36 -15.81 16 11 C 0.70 14.38 8.29 -86.92 -0.72 13.65 16 12 O -0.60 -14.56 15.77 5.29 0.08 -14.47 16 13 N -0.63 -9.74 2.97 -178.52 -0.53 -10.27 16 14 C 0.13 1.66 6.44 -3.71 -0.02 1.63 16 15 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 16 C -0.11 -1.02 5.43 -26.69 -0.14 -1.16 16 17 C 0.08 0.79 3.40 -67.61 -0.23 0.56 16 18 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 19 N -0.84 -7.40 9.26 -4.58 -0.04 -7.45 16 20 C 0.08 0.97 5.96 -3.73 -0.02 0.95 16 21 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 23 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 24 H 0.39 7.40 5.81 -40.82 -0.24 7.16 16 25 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.35 2.83 9.04 -39.29 -0.36 2.47 16 32 H 0.34 2.48 8.98 -39.29 -0.35 2.13 16 33 H 0.08 1.01 5.65 -51.93 -0.29 0.72 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -32.57 275.42 -7.27 -39.84 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.91 Total: 6.05 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.76 Total: 6.80 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.16 Total: -59.37 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.57 -7.27 -39.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357375319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.586 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds