Wall clock time and date at job start Sun Mar 29 2020 21:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00329 * 2 1 4 4 H 1.48504 * 109.47019 * 270.00117 * 3 2 1 5 5 H 1.48499 * 109.47024 * 29.99830 * 3 2 1 6 6 H 1.48497 * 109.47448 * 149.99970 * 3 2 1 7 7 C 1.37882 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99998 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99505 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46779 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00136 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99582 * 4.97591 * 11 10 9 13 13 N 1.34777 * 120.00331 * 184.98398 * 11 10 9 14 14 C 1.46921 * 120.63077 * 174.76826 * 13 11 10 15 15 C 1.53196 * 108.77333 * 126.41418 * 14 13 11 16 16 C 1.53039 * 109.31451 * 54.63340 * 15 14 13 17 17 C 1.53037 * 109.52762 * 298.64524 * 16 15 14 18 18 H 1.09008 * 109.49540 * 301.40565 * 17 16 15 19 19 N 1.46897 * 109.49859 * 181.31163 * 17 16 15 20 20 C 1.46925 * 120.62948 * 354.79084 * 13 11 10 21 21 H 0.97006 * 119.99852 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47223 * 60.00221 * 9 7 2 23 23 H 1.09002 * 109.46843 * 299.99309 * 9 7 2 24 24 H 0.97007 * 120.00183 * 0.02562 * 10 9 7 25 25 H 1.09000 * 109.59190 * 6.62769 * 14 13 11 26 26 H 1.09002 * 109.59064 * 246.20031 * 14 13 11 27 27 H 1.09002 * 109.49733 * 294.67943 * 15 14 13 28 28 H 1.09005 * 109.52468 * 174.60594 * 15 14 13 29 29 H 1.09001 * 109.45580 * 58.65765 * 16 15 14 30 30 H 1.08998 * 109.45947 * 178.63075 * 16 15 14 31 31 H 1.00899 * 111.00298 * 179.97438 * 19 17 16 32 32 H 1.00904 * 110.99777 * 303.95128 * 19 17 16 33 33 H 1.08999 * 109.58930 * 353.37813 * 20 13 11 34 34 H 1.09007 * 109.58967 * 113.80028 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3248 -2.8217 0.0024 12 8 6.1142 -1.9014 0.0929 13 7 5.7749 -4.0882 -0.0980 14 6 7.2132 -4.3645 -0.2143 15 6 7.6127 -5.3646 0.8752 16 6 6.7239 -6.6063 0.7731 17 6 5.2626 -6.2089 0.9942 18 1 5.1569 -5.7415 1.9733 19 7 4.4135 -7.4057 0.9273 20 6 4.8364 -5.2186 -0.0937 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6802 0.8911 23 1 3.8751 -0.6806 -0.8889 24 1 3.3694 -3.3127 0.0021 25 1 7.7747 -3.4393 -0.0847 26 1 7.4256 -4.7889 -1.1956 27 1 7.4849 -4.9052 1.8554 28 1 8.6557 -5.6518 0.7413 29 1 6.8336 -7.0510 -0.2159 30 1 7.0222 -7.3298 1.5318 31 1 3.4432 -7.1692 1.0708 32 1 4.5420 -7.8917 0.0524 33 1 3.8296 -4.8570 0.1154 34 1 4.8549 -5.7127 -1.0652 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357375319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:32 Heat of formation + Delta-G solvation = -57.050458 kcal Electronic energy + Delta-G solvation = -16095.770574 eV Core-core repulsion = 13448.187131 eV Total energy + Delta-G solvation = -2647.583444 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.44624 -38.91872 -36.31624 -35.06030 -34.56834 -33.18111 -29.88403 -29.16596 -26.35882 -24.34131 -23.20875 -21.90768 -20.82011 -19.56173 -18.44886 -17.43434 -16.85880 -16.70767 -16.38918 -15.57822 -15.49485 -15.23859 -15.00904 -14.58115 -14.44972 -14.09079 -13.82366 -13.53816 -13.05195 -12.72493 -12.43927 -12.01496 -11.94028 -11.81779 -11.71078 -11.58358 -11.21083 -10.93694 -10.27832 -9.92543 -9.26644 -8.42050 -6.49211 1.31948 1.33876 1.47637 1.70577 2.11097 2.27266 2.93404 3.02715 3.58901 3.73418 3.85700 4.05988 4.13712 4.27410 4.41863 4.59084 4.67591 4.79090 4.87600 4.91646 5.01553 5.06633 5.21233 5.23499 5.39180 5.49850 5.55514 5.88848 6.13315 6.21128 6.51363 6.58850 7.03420 7.16440 7.57773 8.72622 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.040023 B = 0.006484 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.432300 B = 4317.258814 C = 4904.107783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.251 3.749 10 N -0.724 5.724 11 C 0.693 3.307 12 O -0.642 6.642 13 N -0.624 5.624 14 C 0.122 3.878 15 C -0.125 4.125 16 C -0.103 4.103 17 C 0.083 3.917 18 H 0.065 0.935 19 N -0.838 5.838 20 C 0.078 3.922 21 H 0.273 0.727 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.401 0.599 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.349 0.651 32 H 0.351 0.649 33 H 0.071 0.929 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.303 -15.025 -0.538 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.379 5.379 11 C 0.394 3.606 12 O -0.525 6.525 13 N -0.362 5.362 14 C 0.000 4.000 15 C -0.164 4.164 16 C -0.141 4.141 17 C -0.030 4.030 18 H 0.083 0.917 19 N -0.368 5.368 20 C -0.048 4.048 21 H 0.083 0.917 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.239 0.761 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.089 0.911 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.089 -14.514 0.146 19.545 hybrid contribution -0.960 1.228 -0.767 1.737 sum 12.129 -13.286 -0.621 18.001 Atomic orbital electron populations 1.69975 1.07613 1.28689 1.50511 1.25563 0.95550 1.02593 0.93448 0.85859 0.79206 0.79294 0.79558 1.18809 1.19578 1.18709 1.21234 0.89728 0.94591 1.52939 0.92403 1.18963 0.93187 0.79757 0.95438 1.45313 1.04694 1.09896 1.78024 1.16209 0.82780 0.83664 0.77913 1.90810 1.56196 1.44851 1.60618 1.47258 1.08492 1.03127 1.77332 1.21651 0.78569 0.99844 0.99966 1.21882 1.01197 0.95290 0.98059 1.21484 0.92072 0.97154 1.03392 1.21723 0.94956 0.89246 0.97040 0.91680 1.58956 1.12030 1.23718 1.42058 1.22808 0.92691 0.87878 1.01383 0.91745 0.97331 0.97289 0.76142 0.91184 0.89783 0.93036 0.87898 0.90226 0.90257 0.83774 0.83499 0.91080 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.96 21.45 0.30 -55.40 16 2 C 0.03 1.66 5.47 84.66 0.46 2.12 16 3 Si 0.94 44.68 27.47 68.60 1.88 46.57 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -12.58 6.54 99.48 0.65 -11.93 16 7 C -0.55 -30.81 9.83 25.60 0.25 -30.56 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.38 16 9 C 0.25 12.86 4.50 85.63 0.39 13.24 16 10 N -0.72 -31.16 5.46 -482.30 -2.63 -33.79 16 11 C 0.69 28.59 8.29 179.05 1.49 30.07 16 12 O -0.64 -31.56 15.77 -3.99 -0.06 -31.62 16 13 N -0.62 -18.53 2.97 -836.97 -2.49 -21.02 16 14 C 0.12 2.93 6.44 86.36 0.56 3.48 16 15 C -0.13 -2.24 6.08 30.67 0.19 -2.06 16 16 C -0.10 -1.59 5.43 30.62 0.17 -1.42 16 17 C 0.08 1.56 3.40 44.98 0.15 1.71 16 18 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 19 N -0.84 -12.65 9.26 -168.40 -1.56 -14.21 16 20 C 0.08 1.72 5.96 86.35 0.51 2.23 16 21 H 0.27 15.23 8.31 -92.70 -0.77 14.45 16 22 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 23 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 24 H 0.40 15.29 5.81 -92.70 -0.54 14.75 16 25 H 0.07 2.04 7.00 -2.39 -0.02 2.03 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.35 5.03 9.04 -89.69 -0.81 4.22 16 32 H 0.35 3.99 8.98 -89.69 -0.81 3.19 16 33 H 0.07 1.71 5.65 -2.39 -0.01 1.70 16 34 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -70.27 275.42 -1.48 -71.75 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -1.09 Total: 18.90 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 4.16 Total: 18.83 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -6.38 Total: -124.42 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.06 Total: -31.62 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -70.27 -1.48 -71.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357375319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.700 kcal (2) G-P(sol) polarization free energy of solvation -70.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds