Wall clock time and date at job start Sun Mar 29 2020 21:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47224 * 2 1 4 4 H 1.09000 * 109.47015 * 54.45342 * 3 2 1 5 5 C 1.50692 * 109.47388 * 174.45700 * 3 2 1 6 6 H 1.08001 * 120.00119 * 119.99957 * 5 3 2 7 7 C 1.37872 * 120.00162 * 300.27351 * 5 3 2 8 8 N 1.31517 * 120.00336 * 359.72503 * 7 5 3 9 9 Si 1.86806 * 120.00165 * 179.72453 * 7 5 3 10 10 H 1.48497 * 109.47031 * 60.00025 * 9 7 5 11 11 H 1.48503 * 109.46984 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47124 * 299.99772 * 9 7 5 13 13 N 1.46907 * 109.46674 * 294.45994 * 3 2 1 14 14 C 1.46907 * 110.99879 * 152.66914 * 13 3 2 15 15 H 1.09001 * 109.46933 * 327.35245 * 14 13 3 16 16 C 1.53000 * 109.47364 * 87.35218 * 14 13 3 17 17 C 1.53001 * 109.46816 * 207.35549 * 14 13 3 18 18 H 1.09004 * 110.32725 * 182.24532 * 17 14 13 19 19 C 1.54476 * 110.37086 * 59.99721 * 17 14 13 20 20 C 1.54505 * 104.05994 * 217.18766 * 19 17 14 21 21 C 1.54474 * 104.06610 * 0.02562 * 20 19 17 22 22 O 1.44422 * 104.80436 * 23.97392 * 21 20 19 23 23 H 1.08997 * 109.47718 * 296.13944 * 1 2 3 24 24 H 1.09001 * 109.47317 * 56.13620 * 1 2 3 25 25 H 1.09002 * 109.46931 * 176.13415 * 1 2 3 26 26 H 1.08992 * 109.47817 * 239.99732 * 2 1 3 27 27 H 1.09004 * 109.47102 * 119.99606 * 2 1 3 28 28 H 0.96991 * 120.00618 * 179.97438 * 8 7 5 29 29 H 1.00895 * 110.99400 * 276.61576 * 13 3 2 30 30 H 1.08999 * 109.46835 * 300.00201 * 16 14 13 31 31 H 1.08998 * 109.46563 * 60.00111 * 16 14 13 32 32 H 1.08999 * 109.46718 * 179.97438 * 16 14 13 33 33 H 1.08994 * 110.51659 * 335.83552 * 19 17 14 34 34 H 1.08998 * 110.50950 * 98.54664 * 19 17 14 35 35 H 1.08999 * 110.51356 * 118.64976 * 20 19 17 36 36 H 1.09003 * 110.51662 * 241.35287 * 20 19 17 37 37 H 1.08998 * 110.37699 * 142.80945 * 21 20 19 38 38 H 1.09009 * 110.37356 * 265.14622 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 0.8362 5 6 3.5406 1.4448 0.1372 6 1 4.1528 1.8869 -0.6349 7 6 4.1324 0.8774 1.2457 8 7 3.3870 0.3390 2.1860 9 14 5.9930 0.8734 1.4122 10 1 6.4927 2.2717 1.4150 11 1 6.3748 0.2082 2.6838 12 1 6.5906 0.1363 0.2698 13 7 1.6625 2.0953 -1.2608 14 6 1.5282 3.5473 -1.0822 15 1 1.1671 3.7577 -0.0756 16 6 2.8902 4.2142 -1.2852 17 6 0.5333 4.0971 -2.1063 18 1 0.4529 5.1801 -2.0124 19 6 -0.8507 3.4368 -1.9197 20 6 -1.3834 3.2682 -3.3602 21 6 -0.2581 3.8460 -4.2467 22 8 0.9378 3.7341 -3.4446 23 1 -0.3634 0.4527 0.9225 24 1 -0.3634 0.5726 -0.8533 25 1 -0.3633 -1.0254 -0.0693 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8033 -0.0605 2.9657 29 1 2.3244 1.8805 -1.9914 30 1 3.5989 3.8224 -0.5557 31 1 3.2513 4.0037 -2.2919 32 1 2.7904 5.2915 -1.1532 33 1 -0.7485 2.4663 -1.4342 34 1 -1.5089 4.0862 -1.3426 35 1 -1.5447 2.2143 -3.5869 36 1 -2.3052 3.8342 -3.4952 37 1 -0.1576 3.2617 -5.1613 38 1 -0.4599 4.8908 -4.4832 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035735547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:11 Heat of formation + Delta-G solvation = -61.788684 kcal Electronic energy + Delta-G solvation = -16980.490689 eV Core-core repulsion = 14436.242124 eV Total energy + Delta-G solvation = -2544.248565 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.14950 -36.30896 -33.23950 -31.65411 -31.43215 -29.03950 -27.44334 -25.92866 -23.06034 -22.62990 -20.94317 -19.83084 -19.40220 -16.49012 -15.95569 -15.52790 -15.18297 -14.65435 -13.64817 -13.51105 -13.28519 -12.97147 -12.54866 -12.44909 -11.99609 -11.61288 -11.32036 -11.25479 -11.07577 -11.00210 -10.76936 -10.65299 -10.39906 -10.34368 -10.22495 -10.03853 -9.56350 -9.51017 -9.13373 -8.91390 -8.32470 -7.13848 -5.95036 -4.07073 3.30451 3.35568 3.38526 4.31025 4.42769 4.97147 5.13196 5.24112 5.27949 5.36418 5.51036 5.62194 5.86183 5.87978 6.01744 6.07580 6.11962 6.27540 6.28563 6.41877 6.51471 6.56166 6.65166 6.73278 6.85491 7.07458 7.19258 7.24092 7.28363 7.51636 7.65381 7.83426 8.16259 8.24818 8.42423 8.77033 9.07560 9.59868 11.04598 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033754 B = 0.008149 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.339818 B = 3435.263029 C = 3982.888330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.029 0.971 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.100 3.900 15 H 0.078 0.922 16 C -0.177 4.177 17 C 0.086 3.914 18 H 0.054 0.946 19 C -0.147 4.147 20 C -0.151 4.151 21 C 0.046 3.954 22 O -0.361 6.361 23 H 0.034 0.966 24 H 0.050 0.950 25 H 0.023 0.977 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.261 0.739 29 H 0.335 0.665 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 5.890 -7.591 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.047 0.953 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.304 5.304 14 C -0.012 4.012 15 H 0.096 0.904 16 C -0.236 4.236 17 C 0.028 3.972 18 H 0.071 0.929 19 C -0.184 4.184 20 C -0.189 4.189 21 C -0.032 4.032 22 O -0.279 6.279 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.816 5.595 -7.383 12.120 hybrid contribution 1.785 0.354 0.290 1.843 sum -6.030 5.950 -7.094 11.049 Atomic orbital electron populations 1.21742 0.99235 0.98391 1.00203 1.21492 0.91937 0.99473 1.01557 1.19195 0.92875 0.91210 0.86025 0.95270 1.21917 0.92890 1.37795 1.05346 0.92529 1.24937 0.97647 0.95112 0.95891 1.69864 1.34728 1.38433 1.09473 0.86762 0.86402 0.78142 0.77289 1.20456 1.21349 1.20350 1.60795 1.53919 1.05493 1.10219 1.21405 0.93150 0.90521 0.96090 0.90428 1.22521 0.99452 0.99135 1.02496 1.23159 0.94230 0.96297 0.83507 0.92854 1.22950 0.95559 1.03593 0.96344 1.22871 0.98210 1.01792 0.95997 1.23280 0.85589 0.99125 0.95184 1.89153 1.30071 1.89543 1.19179 0.94643 0.93128 0.95777 0.95185 0.89273 0.92941 0.84801 0.90406 0.92939 0.94416 0.88196 0.92150 0.90957 0.91768 0.89943 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.85 37.15 0.37 -2.46 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.21 5.19 1.98 -68.86 -0.14 5.05 16 4 H 0.03 0.78 7.36 -51.93 -0.38 0.40 16 5 C -0.54 -14.25 7.18 -34.45 -0.25 -14.50 16 6 H 0.06 1.49 6.69 -52.49 -0.35 1.14 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.89 -24.88 11.28 55.43 0.63 -24.26 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.67 -13.96 4.38 -100.95 -0.44 -14.41 16 14 C 0.10 1.86 2.45 -67.71 -0.17 1.69 16 15 H 0.08 1.51 7.36 -51.93 -0.38 1.13 16 16 C -0.18 -3.29 8.70 37.16 0.32 -2.97 16 17 C 0.09 1.38 3.07 -25.96 -0.08 1.30 16 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.15 -2.15 6.53 -25.17 -0.16 -2.31 16 20 C -0.15 -1.89 7.09 -25.17 -0.18 -2.07 16 21 C 0.05 0.59 7.63 37.93 0.29 0.88 16 22 O -0.36 -6.05 10.72 -35.23 -0.38 -6.43 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.98 6.23 -51.93 -0.32 0.66 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.38 5.93 -51.93 -0.31 2.07 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.33 7.30 8.06 -39.29 -0.32 6.98 16 30 H 0.08 1.64 6.03 -51.93 -0.31 1.33 16 31 H 0.05 0.98 7.84 -51.93 -0.41 0.57 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.69 5.76 -51.93 -0.30 1.39 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -27.01 293.43 -7.47 -34.48 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.44 Total: 6.41 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.23 Total: -16.35 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.18 Total: -38.66 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.38 Total: -6.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.01 -7.47 -34.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035735547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.305 kcal (2) G-P(sol) polarization free energy of solvation -27.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds