Wall clock time and date at job start Sun Mar 29 2020 21:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47224 * 2 1 4 4 H 1.09000 * 109.47015 * 54.45342 * 3 2 1 5 5 C 1.50692 * 109.47388 * 174.45700 * 3 2 1 6 6 H 1.08001 * 120.00119 * 119.99957 * 5 3 2 7 7 C 1.37872 * 120.00162 * 300.27351 * 5 3 2 8 8 N 1.31517 * 120.00336 * 359.72503 * 7 5 3 9 9 Si 1.86806 * 120.00165 * 179.72453 * 7 5 3 10 10 H 1.48497 * 109.47031 * 60.00025 * 9 7 5 11 11 H 1.48503 * 109.46984 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47124 * 299.99772 * 9 7 5 13 13 N 1.46907 * 109.46674 * 294.45994 * 3 2 1 14 14 C 1.46907 * 110.99879 * 152.66914 * 13 3 2 15 15 H 1.09001 * 109.46933 * 327.35245 * 14 13 3 16 16 C 1.53000 * 109.47364 * 87.35218 * 14 13 3 17 17 C 1.53001 * 109.46816 * 207.35549 * 14 13 3 18 18 H 1.09004 * 110.32725 * 182.24532 * 17 14 13 19 19 C 1.54476 * 110.37086 * 59.99721 * 17 14 13 20 20 C 1.54505 * 104.05994 * 217.18766 * 19 17 14 21 21 C 1.54474 * 104.06610 * 0.02562 * 20 19 17 22 22 O 1.44422 * 104.80436 * 23.97392 * 21 20 19 23 23 H 1.08997 * 109.47718 * 296.13944 * 1 2 3 24 24 H 1.09001 * 109.47317 * 56.13620 * 1 2 3 25 25 H 1.09002 * 109.46931 * 176.13415 * 1 2 3 26 26 H 1.08992 * 109.47817 * 239.99732 * 2 1 3 27 27 H 1.09004 * 109.47102 * 119.99606 * 2 1 3 28 28 H 0.96991 * 120.00618 * 179.97438 * 8 7 5 29 29 H 1.00895 * 110.99400 * 276.61576 * 13 3 2 30 30 H 1.08999 * 109.46835 * 300.00201 * 16 14 13 31 31 H 1.08998 * 109.46563 * 60.00111 * 16 14 13 32 32 H 1.08999 * 109.46718 * 179.97438 * 16 14 13 33 33 H 1.08994 * 110.51659 * 335.83552 * 19 17 14 34 34 H 1.08998 * 110.50950 * 98.54664 * 19 17 14 35 35 H 1.08999 * 110.51356 * 118.64976 * 20 19 17 36 36 H 1.09003 * 110.51662 * 241.35287 * 20 19 17 37 37 H 1.08998 * 110.37699 * 142.80945 * 21 20 19 38 38 H 1.09009 * 110.37356 * 265.14622 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 0.8362 5 6 3.5406 1.4448 0.1372 6 1 4.1528 1.8869 -0.6349 7 6 4.1324 0.8774 1.2457 8 7 3.3870 0.3390 2.1860 9 14 5.9930 0.8734 1.4122 10 1 6.4927 2.2717 1.4150 11 1 6.3748 0.2082 2.6838 12 1 6.5906 0.1363 0.2698 13 7 1.6625 2.0953 -1.2608 14 6 1.5282 3.5473 -1.0822 15 1 1.1671 3.7577 -0.0756 16 6 2.8902 4.2142 -1.2852 17 6 0.5333 4.0971 -2.1063 18 1 0.4529 5.1801 -2.0124 19 6 -0.8507 3.4368 -1.9197 20 6 -1.3834 3.2682 -3.3602 21 6 -0.2581 3.8460 -4.2467 22 8 0.9378 3.7341 -3.4446 23 1 -0.3634 0.4527 0.9225 24 1 -0.3634 0.5726 -0.8533 25 1 -0.3633 -1.0254 -0.0693 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8033 -0.0605 2.9657 29 1 2.3244 1.8805 -1.9914 30 1 3.5989 3.8224 -0.5557 31 1 3.2513 4.0037 -2.2919 32 1 2.7904 5.2915 -1.1532 33 1 -0.7485 2.4663 -1.4342 34 1 -1.5089 4.0862 -1.3426 35 1 -1.5447 2.2143 -3.5869 36 1 -2.3052 3.8342 -3.4952 37 1 -0.1576 3.2617 -5.1613 38 1 -0.4599 4.8908 -4.4832 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035735547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:11 Heat of formation + Delta-G solvation = -78.140427 kcal Electronic energy + Delta-G solvation = -16981.199754 eV Core-core repulsion = 14436.242124 eV Total energy + Delta-G solvation = -2544.957630 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38786 -38.01042 -35.01090 -33.38132 -32.76136 -30.60828 -28.77725 -27.86643 -24.57408 -24.24837 -22.08209 -21.38214 -21.14987 -18.51913 -17.17237 -16.86702 -16.69204 -16.25966 -15.39536 -15.10507 -14.66010 -14.39063 -14.11484 -13.99772 -13.61708 -13.24730 -13.10198 -12.93127 -12.60016 -12.51371 -12.38858 -12.21215 -11.95806 -11.76068 -11.71992 -11.55286 -11.40623 -11.07821 -10.83145 -10.46001 -10.37701 -8.91692 -8.00130 -6.20737 1.39092 1.40316 1.47046 2.42276 3.17167 3.18730 3.69533 3.89953 4.06445 4.21581 4.30672 4.47015 4.55392 4.57474 4.66185 4.79204 4.80893 4.88981 4.93970 5.00171 5.06159 5.12296 5.17179 5.25983 5.28726 5.40951 5.48333 5.60783 5.62519 5.70758 5.84076 6.12571 6.18422 6.28224 6.50831 6.90570 7.10076 7.49663 8.95233 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033754 B = 0.008149 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.339818 B = 3435.263029 C = 3982.888330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.224 3.776 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.662 5.662 14 C 0.096 3.904 15 H 0.065 0.935 16 C -0.168 4.168 17 C 0.091 3.909 18 H 0.073 0.927 19 C -0.148 4.148 20 C -0.144 4.144 21 C 0.040 3.960 22 O -0.388 6.388 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 6.820 -8.866 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.290 5.290 14 C -0.015 4.015 15 H 0.083 0.917 16 C -0.227 4.227 17 C 0.033 3.967 18 H 0.090 0.910 19 C -0.186 4.186 20 C -0.182 4.182 21 C -0.036 4.036 22 O -0.307 6.307 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.597 6.537 -8.673 13.851 hybrid contribution 2.006 0.103 0.656 2.113 sum -6.591 6.640 -8.016 12.321 Atomic orbital electron populations 1.21590 0.96482 0.99755 1.00431 1.21353 0.94392 0.98690 0.99681 1.18955 0.91569 0.91396 0.86520 0.98240 1.22208 0.94198 1.37230 1.05144 0.92926 1.25618 1.01491 0.95085 0.95826 1.69992 1.36134 1.39183 1.09840 0.85843 0.81831 0.78106 0.77197 1.20117 1.21081 1.20062 1.60757 1.53028 1.06983 1.08234 1.21483 0.94114 0.89180 0.96762 0.91707 1.22383 0.98566 1.00457 1.01261 1.23055 0.93754 0.97150 0.82717 0.90972 1.22917 0.95297 1.02433 0.97916 1.22848 0.99099 1.02079 0.94152 1.23513 0.84355 1.00687 0.95093 1.89120 1.32155 1.89869 1.19558 0.95079 0.92049 0.93930 0.95800 0.92246 0.93082 0.85455 0.93452 0.93097 0.92106 0.90757 0.90362 0.91379 0.89070 0.88877 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 9.85 71.98 0.71 -4.34 16 2 C -0.10 -4.95 5.45 30.59 0.17 -4.78 16 3 C 0.22 11.08 1.98 44.17 0.09 11.16 16 4 H 0.00 -0.02 7.36 -2.39 -0.02 -0.04 16 5 C -0.55 -29.50 7.18 25.60 0.18 -29.32 16 6 H 0.05 2.82 6.69 -2.91 -0.02 2.80 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -52.27 11.28 21.45 0.24 -52.03 16 9 Si 0.94 43.85 29.54 68.60 2.03 45.87 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.66 -27.52 4.38 -473.29 -2.07 -29.60 16 14 C 0.10 3.53 2.45 44.91 0.11 3.64 16 15 H 0.06 2.55 7.36 -2.39 -0.02 2.53 16 16 C -0.17 -6.17 8.70 71.98 0.63 -5.54 16 17 C 0.09 2.75 3.07 31.10 0.10 2.85 16 18 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 19 C -0.15 -4.01 6.53 31.61 0.21 -3.80 16 20 C -0.14 -3.17 7.09 31.61 0.22 -2.94 16 21 C 0.04 0.92 7.63 72.48 0.55 1.47 16 22 O -0.39 -12.20 10.72 -148.98 -1.60 -13.80 16 23 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 2.33 6.23 -2.39 -0.01 2.31 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 3.24 5.93 -2.38 -0.01 3.23 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.33 14.42 8.06 -89.70 -0.72 13.69 16 30 H 0.05 2.01 6.03 -2.39 -0.01 2.00 16 31 H 0.05 1.86 7.84 -2.39 -0.02 1.84 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.41 5.76 -2.39 -0.01 2.40 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -58.07 293.43 2.31 -55.76 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.30 Total: 23.89 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.41 Total: -30.10 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.83 Total: -81.63 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -1.60 Total: -13.80 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.07 2.31 -55.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035735547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.380 kcal (2) G-P(sol) polarization free energy of solvation -58.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds