Wall clock time and date at job start Sun Mar 29 2020 21:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47466 * 2 1 4 4 H 1.08999 * 109.47098 * 305.61573 * 3 2 1 5 5 C 1.50694 * 109.47488 * 185.61090 * 3 2 1 6 6 H 1.08000 * 120.00368 * 240.00279 * 5 3 2 7 7 C 1.37876 * 119.99908 * 60.00422 * 5 3 2 8 8 N 1.31517 * 119.99812 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00223 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47073 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47301 * 119.99519 * 9 7 5 12 12 H 1.48497 * 109.47280 * 239.99549 * 9 7 5 13 13 N 1.46900 * 109.47048 * 65.60794 * 3 2 1 14 14 C 1.46896 * 111.00398 * 203.39840 * 13 3 2 15 15 H 1.09006 * 109.47097 * 324.02270 * 14 13 3 16 16 C 1.52991 * 109.47287 * 84.02518 * 14 13 3 17 17 C 1.53003 * 109.47220 * 204.02721 * 14 13 3 18 18 H 1.09003 * 110.32966 * 182.25098 * 17 14 13 19 19 C 1.54474 * 110.37495 * 59.99684 * 17 14 13 20 20 C 1.54509 * 104.06260 * 217.19151 * 19 17 14 21 21 C 1.54478 * 104.06437 * 0.02562 * 20 19 17 22 22 O 1.44424 * 104.80116 * 23.97913 * 21 20 19 23 23 H 1.09003 * 109.47345 * 173.74940 * 1 2 3 24 24 H 1.09002 * 109.47174 * 293.74757 * 1 2 3 25 25 H 1.08998 * 109.47198 * 53.74869 * 1 2 3 26 26 H 1.09008 * 109.46801 * 240.00234 * 2 1 3 27 27 H 1.09001 * 109.47289 * 120.00430 * 2 1 3 28 28 H 0.97006 * 119.99831 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00548 * 327.35596 * 13 3 2 30 30 H 1.09001 * 109.47415 * 64.62561 * 16 14 13 31 31 H 1.09004 * 109.47749 * 184.62772 * 16 14 13 32 32 H 1.09007 * 109.47214 * 304.62790 * 16 14 13 33 33 H 1.08992 * 110.51073 * 335.83722 * 19 17 14 34 34 H 1.09003 * 110.51015 * 98.54966 * 19 17 14 35 35 H 1.09002 * 110.51370 * 118.64943 * 20 19 17 36 36 H 1.09002 * 110.51381 * 241.35492 * 20 19 17 37 37 H 1.09003 * 110.37216 * 142.80676 * 21 20 19 38 38 H 1.09004 * 110.37393 * 265.14699 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5970 1.9845 -0.8354 5 6 3.5406 1.4447 -0.1389 6 1 4.1537 1.8864 0.6327 7 6 4.1308 0.8828 -1.2511 8 7 3.3842 0.3444 -2.1904 9 14 5.9908 0.8849 -1.4230 10 1 6.5966 1.5458 -0.2392 11 1 6.4811 -0.5138 -1.5145 12 1 6.3735 1.6249 -2.6523 13 7 1.6640 2.0947 1.2614 14 6 1.6206 3.5548 1.1065 15 1 2.4107 3.8717 0.4256 16 6 0.2615 3.9672 0.5378 17 6 1.8257 4.2187 2.4697 18 1 1.7563 5.3026 2.3774 19 6 3.1936 3.8159 3.0637 20 6 2.9183 3.6735 4.5774 21 6 1.4165 4.0065 4.7188 22 8 0.8529 3.7284 3.4184 23 1 -0.3634 -1.0216 -0.1119 24 1 -0.3633 0.4139 0.9407 25 1 -0.3633 0.6077 -0.8287 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.7994 -0.0513 -2.9728 29 1 0.7830 1.7410 1.6029 30 1 -0.5217 3.7242 1.2558 31 1 0.2582 5.0402 0.3458 32 1 0.0795 3.4309 -0.3937 33 1 3.5270 2.8664 2.6452 34 1 3.9334 4.5954 2.8817 35 1 3.1158 2.6535 4.9072 36 1 3.5221 4.3826 5.1438 37 1 0.9565 3.3708 5.4755 38 1 1.2832 5.0580 4.9732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035735548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:13 Heat of formation + Delta-G solvation = -60.684092 kcal Electronic energy + Delta-G solvation = -16968.177723 eV Core-core repulsion = 14423.977057 eV Total energy + Delta-G solvation = -2544.200666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.12945 -36.40958 -33.27810 -31.61827 -31.47925 -28.85154 -27.65454 -26.00051 -23.22437 -22.60999 -20.87920 -19.76659 -19.46663 -16.23735 -15.88636 -15.51110 -15.20833 -14.58887 -13.87433 -13.62689 -13.23962 -12.96904 -12.68222 -12.47071 -12.27393 -11.65990 -11.43999 -11.28256 -11.13410 -10.96272 -10.84539 -10.59741 -10.38732 -10.31733 -10.10828 -9.89247 -9.67288 -9.55292 -9.18016 -8.97713 -8.31334 -7.05995 -5.92928 -3.96885 3.32249 3.40528 3.44794 4.33250 4.47198 5.02632 5.19137 5.26411 5.33255 5.37941 5.52052 5.65308 5.84095 5.90555 5.98717 6.01594 6.13926 6.22909 6.25581 6.26087 6.37073 6.46590 6.47899 6.61575 6.76856 6.93356 6.95675 7.18213 7.28384 7.29838 7.61651 7.85355 7.98599 8.42089 8.47433 8.89457 9.11962 9.68128 11.12171 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.009210 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.415774 B = 3039.364878 C = 3679.624620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.672 5.672 14 C 0.096 3.904 15 H 0.091 0.909 16 C -0.177 4.177 17 C 0.088 3.912 18 H 0.054 0.946 19 C -0.145 4.145 20 C -0.151 4.151 21 C 0.047 3.953 22 O -0.365 6.365 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.258 0.742 29 H 0.323 0.677 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 6.299 8.923 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.303 5.303 14 C -0.015 4.015 15 H 0.110 0.890 16 C -0.236 4.236 17 C 0.030 3.970 18 H 0.072 0.928 19 C -0.183 4.183 20 C -0.189 4.189 21 C -0.031 4.031 22 O -0.284 6.284 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.142 0.858 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.902 6.089 8.943 11.201 hybrid contribution 0.375 0.210 -0.635 0.766 sum -2.527 6.299 8.308 10.728 Atomic orbital electron populations 1.21875 0.99656 0.99536 0.99609 1.21734 0.91209 1.00453 1.02852 1.19179 0.95194 0.89959 0.84720 0.98093 1.21267 0.91387 1.36188 1.03996 0.92075 1.24959 0.97867 0.95807 0.95979 1.69891 1.34453 1.39652 1.09594 0.86544 0.86120 0.77551 0.77781 1.19830 1.21230 1.21349 1.60624 1.35553 1.01533 1.32615 1.21465 0.96310 0.90888 0.92866 0.89049 1.22457 0.99295 1.00611 1.01247 1.23090 0.87601 0.95723 0.90560 0.92814 1.22926 0.97120 1.04355 0.93904 1.22882 0.96354 1.02079 0.97616 1.23275 0.93306 0.99209 0.87271 1.89110 1.42458 1.82199 1.14661 0.94584 0.94456 0.94014 0.88447 0.94168 0.93239 0.85837 0.92653 0.93499 0.92605 0.87604 0.92107 0.90936 0.91806 0.89989 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.62 37.16 0.36 -2.62 16 2 C -0.12 -2.95 5.37 -26.74 -0.14 -3.09 16 3 C 0.22 5.31 1.84 -68.87 -0.13 5.19 16 4 H 0.00 0.04 7.02 -51.93 -0.36 -0.33 16 5 C -0.49 -13.20 8.40 -34.44 -0.29 -13.49 16 6 H 0.06 1.66 7.53 -52.49 -0.40 1.27 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.39 11.29 55.43 0.63 -24.77 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.67 -14.18 4.96 -100.96 -0.50 -14.68 16 14 C 0.10 1.81 2.25 -67.72 -0.15 1.66 16 15 H 0.09 1.90 7.58 -51.93 -0.39 1.50 16 16 C -0.18 -3.05 9.11 37.15 0.34 -2.71 16 17 C 0.09 1.46 3.07 -25.96 -0.08 1.38 16 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.15 -2.34 6.53 -25.17 -0.16 -2.51 16 20 C -0.15 -2.05 7.09 -25.16 -0.18 -2.23 16 21 C 0.05 0.62 7.63 37.93 0.29 0.91 16 22 O -0.37 -6.14 10.61 -35.23 -0.37 -6.51 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.68 6.67 -51.93 -0.35 0.34 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 2.60 5.94 -51.92 -0.31 2.29 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.32 6.67 6.34 -39.29 -0.25 6.42 16 30 H 0.05 0.93 7.73 -51.93 -0.40 0.53 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 1.03 7.28 -51.92 -0.38 0.65 16 33 H 0.11 2.05 6.91 -51.93 -0.36 1.69 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 296.68 15.07 4.47 4.47 Total: -1.00 -27.73 296.68 -7.60 -35.33 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.56 Total: 5.95 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.24 Total: -16.12 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.13 Total: -39.45 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.37 Total: -6.51 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.73 -7.60 -35.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035735548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.355 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds