Wall clock time and date at job start Sun Mar 29 2020 21:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47466 * 2 1 4 4 H 1.08999 * 109.47098 * 305.61573 * 3 2 1 5 5 C 1.50694 * 109.47488 * 185.61090 * 3 2 1 6 6 H 1.08000 * 120.00368 * 240.00279 * 5 3 2 7 7 C 1.37876 * 119.99908 * 60.00422 * 5 3 2 8 8 N 1.31517 * 119.99812 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00223 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47073 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47301 * 119.99519 * 9 7 5 12 12 H 1.48497 * 109.47280 * 239.99549 * 9 7 5 13 13 N 1.46900 * 109.47048 * 65.60794 * 3 2 1 14 14 C 1.46896 * 111.00398 * 203.39840 * 13 3 2 15 15 H 1.09006 * 109.47097 * 324.02270 * 14 13 3 16 16 C 1.52991 * 109.47287 * 84.02518 * 14 13 3 17 17 C 1.53003 * 109.47220 * 204.02721 * 14 13 3 18 18 H 1.09003 * 110.32966 * 182.25098 * 17 14 13 19 19 C 1.54474 * 110.37495 * 59.99684 * 17 14 13 20 20 C 1.54509 * 104.06260 * 217.19151 * 19 17 14 21 21 C 1.54478 * 104.06437 * 0.02562 * 20 19 17 22 22 O 1.44424 * 104.80116 * 23.97913 * 21 20 19 23 23 H 1.09003 * 109.47345 * 173.74940 * 1 2 3 24 24 H 1.09002 * 109.47174 * 293.74757 * 1 2 3 25 25 H 1.08998 * 109.47198 * 53.74869 * 1 2 3 26 26 H 1.09008 * 109.46801 * 240.00234 * 2 1 3 27 27 H 1.09001 * 109.47289 * 120.00430 * 2 1 3 28 28 H 0.97006 * 119.99831 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00548 * 327.35596 * 13 3 2 30 30 H 1.09001 * 109.47415 * 64.62561 * 16 14 13 31 31 H 1.09004 * 109.47749 * 184.62772 * 16 14 13 32 32 H 1.09007 * 109.47214 * 304.62790 * 16 14 13 33 33 H 1.08992 * 110.51073 * 335.83722 * 19 17 14 34 34 H 1.09003 * 110.51015 * 98.54966 * 19 17 14 35 35 H 1.09002 * 110.51370 * 118.64943 * 20 19 17 36 36 H 1.09002 * 110.51381 * 241.35492 * 20 19 17 37 37 H 1.09003 * 110.37216 * 142.80676 * 21 20 19 38 38 H 1.09004 * 110.37393 * 265.14699 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5970 1.9845 -0.8354 5 6 3.5406 1.4447 -0.1389 6 1 4.1537 1.8864 0.6327 7 6 4.1308 0.8828 -1.2511 8 7 3.3842 0.3444 -2.1904 9 14 5.9908 0.8849 -1.4230 10 1 6.5966 1.5458 -0.2392 11 1 6.4811 -0.5138 -1.5145 12 1 6.3735 1.6249 -2.6523 13 7 1.6640 2.0947 1.2614 14 6 1.6206 3.5548 1.1065 15 1 2.4107 3.8717 0.4256 16 6 0.2615 3.9672 0.5378 17 6 1.8257 4.2187 2.4697 18 1 1.7563 5.3026 2.3774 19 6 3.1936 3.8159 3.0637 20 6 2.9183 3.6735 4.5774 21 6 1.4165 4.0065 4.7188 22 8 0.8529 3.7284 3.4184 23 1 -0.3634 -1.0216 -0.1119 24 1 -0.3633 0.4139 0.9407 25 1 -0.3633 0.6077 -0.8287 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.7994 -0.0513 -2.9728 29 1 0.7830 1.7410 1.6029 30 1 -0.5217 3.7242 1.2558 31 1 0.2582 5.0402 0.3458 32 1 0.0795 3.4309 -0.3937 33 1 3.5270 2.8664 2.6452 34 1 3.9334 4.5954 2.8817 35 1 3.1158 2.6535 4.9072 36 1 3.5221 4.3826 5.1438 37 1 0.9565 3.3708 5.4755 38 1 1.2832 5.0580 4.9732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035735548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:12 Heat of formation + Delta-G solvation = -77.802251 kcal Electronic energy + Delta-G solvation = -16968.920022 eV Core-core repulsion = 14423.977057 eV Total energy + Delta-G solvation = -2544.942965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41521 -38.11239 -35.05046 -33.45448 -32.76396 -30.47574 -28.95976 -27.94546 -24.81707 -24.16622 -22.09348 -21.35673 -21.21874 -18.27729 -17.23113 -16.88135 -16.67737 -16.25902 -15.62495 -15.20598 -14.70713 -14.44081 -14.20142 -13.98534 -13.81888 -13.37909 -13.12214 -12.83215 -12.73377 -12.52600 -12.43181 -12.19406 -11.94913 -11.79169 -11.70470 -11.52244 -11.47064 -11.12627 -10.93827 -10.48201 -10.39730 -8.82973 -8.02665 -6.13964 1.40302 1.42892 1.53946 2.45661 3.14541 3.22315 3.66475 3.85452 4.05604 4.20548 4.28974 4.44327 4.49937 4.51929 4.55240 4.59852 4.71929 4.74669 4.86739 4.97470 5.00756 5.06266 5.10933 5.20000 5.26199 5.27089 5.36987 5.42274 5.58122 5.66544 5.81446 5.94536 6.11118 6.42875 6.62015 7.02074 7.10068 7.55152 9.00419 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.009210 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.415774 B = 3039.364878 C = 3679.624620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.226 3.774 4 H -0.030 1.030 5 C -0.502 4.502 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.668 5.668 14 C 0.092 3.908 15 H 0.066 0.934 16 C -0.167 4.167 17 C 0.094 3.906 18 H 0.076 0.924 19 C -0.148 4.148 20 C -0.145 4.145 21 C 0.043 3.957 22 O -0.386 6.386 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.258 0.742 29 H 0.327 0.673 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 7.335 10.497 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.118 3.882 4 H -0.013 1.013 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.299 5.299 14 C -0.019 4.019 15 H 0.084 0.916 16 C -0.226 4.226 17 C 0.036 3.964 18 H 0.094 0.906 19 C -0.186 4.186 20 C -0.183 4.183 21 C -0.033 4.033 22 O -0.305 6.305 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.040 7.136 10.536 13.083 hybrid contribution 0.406 -0.088 -1.093 1.170 sum -2.634 7.048 9.443 12.073 Atomic orbital electron populations 1.21728 0.96570 1.00857 1.00300 1.21575 0.93992 0.99408 1.00909 1.18925 0.93877 0.90347 0.85084 1.01290 1.21514 0.92790 1.35956 1.03825 0.92953 1.25669 1.01959 0.95619 0.95783 1.70021 1.35994 1.40248 1.09951 0.85593 0.81241 0.77517 0.77778 1.19330 1.20942 1.20959 1.60544 1.35777 1.02987 1.30629 1.21488 0.96431 0.89539 0.94452 0.91627 1.22331 0.98266 1.01755 1.00224 1.22986 0.87835 0.96431 0.89146 0.90596 1.22869 0.97254 1.02697 0.95812 1.22859 0.97175 1.02536 0.95739 1.23505 0.92817 1.01018 0.85993 1.89075 1.42763 1.82637 1.16069 0.92651 0.92711 0.94571 0.91512 0.94812 0.93273 0.85467 0.91962 0.91280 0.94572 0.91480 0.90852 0.91680 0.89125 0.88562 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 9.62 71.98 0.69 -4.70 16 2 C -0.12 -5.82 5.37 30.59 0.16 -5.66 16 3 C 0.23 11.39 1.84 44.16 0.08 11.47 16 4 H -0.03 -1.70 7.02 -2.39 -0.02 -1.72 16 5 C -0.50 -27.79 8.40 25.60 0.22 -27.58 16 6 H 0.05 2.93 7.53 -2.91 -0.02 2.91 16 7 C 0.01 0.41 5.29 84.65 0.45 0.86 16 8 N -0.92 -53.47 11.29 21.45 0.24 -53.23 16 9 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 N -0.67 -28.50 4.96 -473.34 -2.35 -30.85 16 14 C 0.09 3.46 2.25 44.91 0.10 3.56 16 15 H 0.07 2.80 7.58 -2.38 -0.02 2.78 16 16 C -0.17 -5.62 9.11 71.98 0.66 -4.97 16 17 C 0.09 2.96 3.07 31.10 0.10 3.06 16 18 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 19 C -0.15 -4.61 6.53 31.61 0.21 -4.41 16 20 C -0.15 -3.57 7.09 31.61 0.22 -3.34 16 21 C 0.04 1.02 7.63 72.48 0.55 1.57 16 22 O -0.39 -12.08 10.61 -148.98 -1.58 -13.66 16 23 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.05 1.94 6.67 -2.39 -0.02 1.93 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 3.66 5.94 -2.38 -0.01 3.65 16 27 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 29 H 0.33 13.38 6.34 -89.70 -0.57 12.82 16 30 H 0.06 2.00 7.73 -2.39 -0.02 1.98 16 31 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.04 1.34 7.28 -2.38 -0.02 1.32 16 33 H 0.07 2.62 6.91 -2.39 -0.02 2.61 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -60.29 296.68 2.23 -58.06 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.45 Total: 23.40 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.44 Total: -30.14 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.10 Total: -84.08 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.58 Total: -13.66 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -60.29 2.23 -58.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035735548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.744 kcal (2) G-P(sol) polarization free energy of solvation -60.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds