Wall clock time and date at job start Sun Mar 29 2020 21:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46797 * 2 1 4 4 H 1.09007 * 109.47044 * 174.23771 * 3 2 1 5 5 C 1.50698 * 109.47335 * 54.23943 * 3 2 1 6 6 H 1.07999 * 120.00121 * 240.00028 * 5 3 2 7 7 C 1.37884 * 119.99883 * 59.99814 * 5 3 2 8 8 N 1.31506 * 119.99770 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99746 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47095 * 90.00005 * 9 7 5 11 11 H 1.48505 * 109.46826 * 209.99770 * 9 7 5 12 12 H 1.48493 * 109.47437 * 329.99867 * 9 7 5 13 13 N 1.46899 * 109.47431 * 294.23761 * 3 2 1 14 14 C 1.46898 * 111.00133 * 275.02122 * 13 3 2 15 15 H 1.09002 * 109.47210 * 34.91332 * 14 13 3 16 16 C 1.52999 * 109.47631 * 274.91297 * 14 13 3 17 17 C 1.53007 * 109.47058 * 154.90850 * 14 13 3 18 18 H 1.08996 * 110.33341 * 305.70504 * 17 14 13 19 19 C 1.54485 * 110.36950 * 183.45050 * 17 14 13 20 20 C 1.54510 * 104.05894 * 217.08182 * 19 17 14 21 21 C 1.54480 * 104.06571 * 0.02562 * 20 19 17 22 22 O 1.44427 * 110.36867 * 67.95840 * 17 14 13 23 23 H 1.08995 * 109.47108 * 178.68755 * 1 2 3 24 24 H 1.09002 * 109.46989 * 298.68908 * 1 2 3 25 25 H 1.08997 * 109.47096 * 58.68852 * 1 2 3 26 26 H 1.09001 * 109.46842 * 240.00077 * 2 1 3 27 27 H 1.08999 * 109.47300 * 120.00202 * 2 1 3 28 28 H 0.97004 * 120.00088 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99944 * 38.97565 * 13 3 2 30 30 H 1.09002 * 109.46852 * 300.00254 * 16 14 13 31 31 H 1.08998 * 109.46685 * 59.99319 * 16 14 13 32 32 H 1.08999 * 109.47498 * 179.97438 * 16 14 13 33 33 H 1.08998 * 110.51286 * 335.72694 * 19 17 14 34 34 H 1.08996 * 110.50608 * 98.43811 * 19 17 14 35 35 H 1.09002 * 110.51032 * 118.65135 * 20 19 17 36 36 H 1.08999 * 110.50979 * 241.35628 * 20 19 17 37 37 H 1.08998 * 110.37097 * 142.80730 * 21 20 19 38 38 H 1.09000 * 110.37267 * 265.14890 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1251 1.4443 0.1032 5 6 1.4245 2.1929 1.1529 6 1 0.8171 3.0661 0.9662 7 6 1.6369 1.7645 2.4462 8 7 2.3769 0.7014 2.6735 9 14 0.8735 2.6942 3.8752 10 1 -0.4678 2.1304 4.1725 11 1 1.7424 2.5622 5.0723 12 1 0.7390 4.1290 3.5170 13 7 1.6671 2.0937 -1.2629 14 6 2.6548 1.8107 -2.3128 15 1 3.0417 0.7998 -2.1847 16 6 3.8059 2.8137 -2.2139 17 6 1.9892 1.9319 -3.6852 18 1 1.1054 1.2959 -3.7349 19 6 2.9873 1.5541 -4.8021 20 6 2.6547 2.5337 -5.9498 21 6 1.4955 3.3878 -5.3902 22 8 1.6353 3.3063 -3.9527 23 1 -0.3633 -1.0273 -0.0235 24 1 -0.3633 0.4934 0.9015 25 1 -0.3633 0.5341 -0.8780 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5260 0.3998 3.5833 29 1 0.7413 1.8165 -1.5531 30 1 3.4190 3.8246 -2.3421 31 1 4.2800 2.7274 -1.2362 32 1 4.5390 2.6034 -2.9927 33 1 4.0130 1.6978 -4.4624 34 1 2.8306 0.5239 -5.1218 35 1 3.5161 3.1617 -6.1775 36 1 2.3337 1.9877 -6.8369 37 1 1.5909 4.4214 -5.7228 38 1 0.5357 2.9753 -5.7012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035735550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:15 Heat of formation + Delta-G solvation = -55.877834 kcal Electronic energy + Delta-G solvation = -16768.731032 eV Core-core repulsion = 14224.738781 eV Total energy + Delta-G solvation = -2543.992251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41176 -36.55209 -33.38965 -31.90990 -31.19667 -28.92723 -27.36058 -26.03557 -23.62865 -22.97074 -21.29902 -19.93002 -18.86239 -16.51728 -16.08831 -15.46195 -15.31443 -14.71217 -14.26647 -13.70028 -13.51718 -12.83372 -12.64310 -12.50410 -12.10955 -11.67553 -11.50684 -11.40558 -11.12780 -10.97124 -10.93142 -10.79822 -10.49760 -10.44414 -10.23015 -9.85958 -9.65569 -9.52219 -9.40137 -8.87301 -8.27737 -7.07752 -5.90959 -3.91376 3.36975 3.43563 3.49122 4.10887 4.50131 4.68793 4.80273 5.01453 5.16763 5.32427 5.40849 5.50305 5.61448 5.65857 5.77430 5.82042 5.94406 6.04229 6.10203 6.24729 6.38266 6.41107 6.51558 6.61661 6.66090 6.93895 7.02328 7.10866 7.34330 7.38917 7.56054 7.76542 7.98561 8.37864 8.66835 8.73649 9.15210 9.72054 11.16350 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042176 B = 0.006611 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.721746 B = 4234.235329 C = 4352.207741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.214 3.786 4 H 0.034 0.966 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.674 5.674 14 C 0.091 3.909 15 H 0.044 0.956 16 C -0.131 4.131 17 C 0.077 3.923 18 H 0.061 0.939 19 C -0.154 4.154 20 C -0.153 4.153 21 C 0.039 3.961 22 O -0.349 6.349 23 H 0.021 0.979 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.009 0.991 27 H 0.092 0.908 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 0.374 -14.323 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.305 5.305 14 C -0.020 4.020 15 H 0.061 0.939 16 C -0.189 4.189 17 C 0.018 3.982 18 H 0.078 0.922 19 C -0.192 4.192 20 C -0.191 4.191 21 C -0.038 4.038 22 O -0.267 6.267 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.626 1.061 -13.828 13.882 hybrid contribution -0.587 -0.806 0.419 1.082 sum 0.039 0.255 -13.408 13.411 Atomic orbital electron populations 1.21563 0.97722 0.97890 1.01296 1.22125 0.95010 1.01367 1.00043 1.19252 0.96022 0.88383 0.85680 0.94852 1.21092 1.30117 1.11379 0.89712 0.92035 1.24908 0.95648 0.95223 0.98670 1.69884 1.39423 1.24289 1.20257 0.86586 0.78914 0.80444 0.82002 1.20936 1.21506 1.19920 1.60826 1.03301 1.63258 1.03130 1.21485 0.94339 0.97203 0.88926 0.93851 1.21692 0.96322 1.00394 1.00462 1.23224 0.95762 0.83780 0.95402 0.92161 1.23065 1.01390 0.99399 0.95333 1.22908 0.99450 0.98283 0.98455 1.23405 0.97048 1.00460 0.82889 1.89347 1.90417 1.26934 1.20011 0.95999 0.91506 0.95199 0.97277 0.88995 0.93242 0.85508 0.91636 0.92564 0.94110 0.90021 0.91016 0.90941 0.91103 0.89562 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 37.16 0.35 -2.42 16 2 C -0.15 -3.45 5.48 -26.73 -0.15 -3.60 16 3 C 0.21 5.37 2.14 -68.87 -0.15 5.23 16 4 H 0.03 0.93 7.12 -51.92 -0.37 0.56 16 5 C -0.48 -13.36 7.35 -34.44 -0.25 -13.62 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.54 5.23 -17.82 -0.09 1.45 16 8 N -0.90 -25.64 11.38 55.43 0.63 -25.01 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.67 -14.76 6.03 -100.95 -0.61 -15.37 16 14 C 0.09 1.68 2.34 -67.71 -0.16 1.52 16 15 H 0.04 0.82 7.10 -51.93 -0.37 0.46 16 16 C -0.13 -2.36 8.98 37.16 0.33 -2.03 16 17 C 0.08 1.19 2.94 -25.95 -0.08 1.11 16 18 H 0.06 0.92 8.03 -51.93 -0.42 0.51 16 19 C -0.15 -1.88 6.47 -25.16 -0.16 -2.04 16 20 C -0.15 -1.60 7.09 -25.16 -0.18 -1.77 16 21 C 0.04 0.47 7.63 37.93 0.29 0.76 16 22 O -0.35 -5.76 10.42 -35.23 -0.37 -6.12 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 1.60 7.05 -51.93 -0.37 1.23 16 25 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 26 H 0.01 0.19 7.37 -51.93 -0.38 -0.19 16 27 H 0.09 2.44 6.25 -51.93 -0.32 2.11 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.33 6.95 6.14 -39.29 -0.24 6.71 16 30 H 0.06 1.25 7.54 -51.93 -0.39 0.86 16 31 H 0.06 1.11 7.43 -51.93 -0.39 0.73 16 32 H 0.04 0.61 6.29 -51.93 -0.33 0.29 16 33 H 0.08 1.01 6.01 -51.93 -0.31 0.70 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 291.47 15.07 4.39 4.39 Total: -1.00 -28.87 291.47 -7.52 -36.39 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.30 Total: 4.41 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.24 Total: -15.40 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.02 Total: -40.38 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.37 Total: -6.12 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.87 -7.52 -36.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035735550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.484 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds