Wall clock time and date at job start Sun Mar 29 2020 21:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46797 * 2 1 4 4 H 1.09007 * 109.47044 * 174.23771 * 3 2 1 5 5 C 1.50698 * 109.47335 * 54.23943 * 3 2 1 6 6 H 1.07999 * 120.00121 * 240.00028 * 5 3 2 7 7 C 1.37884 * 119.99883 * 59.99814 * 5 3 2 8 8 N 1.31506 * 119.99770 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99746 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47095 * 90.00005 * 9 7 5 11 11 H 1.48505 * 109.46826 * 209.99770 * 9 7 5 12 12 H 1.48493 * 109.47437 * 329.99867 * 9 7 5 13 13 N 1.46899 * 109.47431 * 294.23761 * 3 2 1 14 14 C 1.46898 * 111.00133 * 275.02122 * 13 3 2 15 15 H 1.09002 * 109.47210 * 34.91332 * 14 13 3 16 16 C 1.52999 * 109.47631 * 274.91297 * 14 13 3 17 17 C 1.53007 * 109.47058 * 154.90850 * 14 13 3 18 18 H 1.08996 * 110.33341 * 305.70504 * 17 14 13 19 19 C 1.54485 * 110.36950 * 183.45050 * 17 14 13 20 20 C 1.54510 * 104.05894 * 217.08182 * 19 17 14 21 21 C 1.54480 * 104.06571 * 0.02562 * 20 19 17 22 22 O 1.44427 * 110.36867 * 67.95840 * 17 14 13 23 23 H 1.08995 * 109.47108 * 178.68755 * 1 2 3 24 24 H 1.09002 * 109.46989 * 298.68908 * 1 2 3 25 25 H 1.08997 * 109.47096 * 58.68852 * 1 2 3 26 26 H 1.09001 * 109.46842 * 240.00077 * 2 1 3 27 27 H 1.08999 * 109.47300 * 120.00202 * 2 1 3 28 28 H 0.97004 * 120.00088 * 180.02562 * 8 7 5 29 29 H 1.00901 * 110.99944 * 38.97565 * 13 3 2 30 30 H 1.09002 * 109.46852 * 300.00254 * 16 14 13 31 31 H 1.08998 * 109.46685 * 59.99319 * 16 14 13 32 32 H 1.08999 * 109.47498 * 179.97438 * 16 14 13 33 33 H 1.08998 * 110.51286 * 335.72694 * 19 17 14 34 34 H 1.08996 * 110.50608 * 98.43811 * 19 17 14 35 35 H 1.09002 * 110.51032 * 118.65135 * 20 19 17 36 36 H 1.08999 * 110.50979 * 241.35628 * 20 19 17 37 37 H 1.08998 * 110.37097 * 142.80730 * 21 20 19 38 38 H 1.09000 * 110.37267 * 265.14890 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1251 1.4443 0.1032 5 6 1.4245 2.1929 1.1529 6 1 0.8171 3.0661 0.9662 7 6 1.6369 1.7645 2.4462 8 7 2.3769 0.7014 2.6735 9 14 0.8735 2.6942 3.8752 10 1 -0.4678 2.1304 4.1725 11 1 1.7424 2.5622 5.0723 12 1 0.7390 4.1290 3.5170 13 7 1.6671 2.0937 -1.2629 14 6 2.6548 1.8107 -2.3128 15 1 3.0417 0.7998 -2.1847 16 6 3.8059 2.8137 -2.2139 17 6 1.9892 1.9319 -3.6852 18 1 1.1054 1.2959 -3.7349 19 6 2.9873 1.5541 -4.8021 20 6 2.6547 2.5337 -5.9498 21 6 1.4955 3.3878 -5.3902 22 8 1.6353 3.3063 -3.9527 23 1 -0.3633 -1.0273 -0.0235 24 1 -0.3633 0.4934 0.9015 25 1 -0.3633 0.5341 -0.8780 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5260 0.3998 3.5833 29 1 0.7413 1.8165 -1.5531 30 1 3.4190 3.8246 -2.3421 31 1 4.2800 2.7274 -1.2362 32 1 4.5390 2.6034 -2.9927 33 1 4.0130 1.6978 -4.4624 34 1 2.8306 0.5239 -5.1218 35 1 3.5161 3.1617 -6.1775 36 1 2.3337 1.9877 -6.8369 37 1 1.5909 4.4214 -5.7228 38 1 0.5357 2.9753 -5.7012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035735550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:14 Heat of formation + Delta-G solvation = -74.729616 kcal Electronic energy + Delta-G solvation = -16769.548507 eV Core-core repulsion = 14224.738781 eV Total energy + Delta-G solvation = -2544.809726 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.57280 -38.27702 -35.13256 -33.28217 -32.77372 -30.48829 -28.65117 -28.00538 -25.37619 -24.39270 -22.34102 -21.39054 -20.63342 -18.27004 -17.29627 -16.98732 -16.80903 -16.37664 -15.66543 -15.27291 -14.71289 -14.56630 -14.28601 -14.13053 -13.86388 -13.09103 -12.85424 -12.77529 -12.65949 -12.53649 -12.45668 -12.32144 -12.13522 -12.03602 -11.66374 -11.49806 -11.38532 -11.21122 -10.90979 -10.58451 -10.41190 -8.84864 -8.04022 -6.11597 1.42347 1.43713 1.54263 2.46746 3.04078 3.24624 3.57368 3.75229 3.98859 4.04366 4.22240 4.24838 4.49031 4.52621 4.58670 4.61862 4.67999 4.75205 4.83843 4.91008 4.94009 5.01267 5.06942 5.16646 5.19754 5.25521 5.42561 5.46144 5.52049 5.69634 5.75979 5.87858 6.06293 6.36631 6.75072 6.92231 7.02695 7.56182 9.01484 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042176 B = 0.006611 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.721746 B = 4234.235329 C = 4352.207741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.223 3.777 4 H -0.002 1.002 5 C -0.499 4.499 6 H 0.047 0.953 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.087 3.913 15 H 0.039 0.961 16 C -0.122 4.122 17 C 0.079 3.921 18 H 0.063 0.937 19 C -0.150 4.150 20 C -0.144 4.144 21 C 0.031 3.969 22 O -0.383 6.383 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.026 0.974 27 H 0.061 0.939 28 H 0.258 0.742 29 H 0.329 0.671 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 0.251 -16.073 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.016 0.984 5 C -0.538 4.538 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.023 4.023 15 H 0.057 0.943 16 C -0.180 4.180 17 C 0.021 3.979 18 H 0.080 0.920 19 C -0.188 4.188 20 C -0.182 4.182 21 C -0.045 4.045 22 O -0.302 6.302 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.107 0.940 -15.598 15.626 hybrid contribution -0.405 -0.739 0.911 1.241 sum -0.298 0.201 -14.687 14.691 Atomic orbital electron populations 1.21442 0.96018 0.99315 1.00766 1.21961 0.96453 1.00066 0.99335 1.18966 0.93606 0.89323 0.86693 0.98396 1.21289 1.30158 1.11233 0.91083 0.93444 1.25570 0.96024 0.95954 1.00866 1.70007 1.40201 1.25277 1.20668 0.85678 0.78405 0.79128 0.79142 1.20079 1.21119 1.19973 1.60703 1.04284 1.63151 1.03168 1.21562 0.93882 0.96881 0.89958 0.94294 1.21610 0.96794 0.99644 0.99971 1.23134 0.96515 0.83906 0.94364 0.91957 1.23056 1.00123 1.00957 0.94709 1.22894 0.99089 0.97782 0.98429 1.23663 0.98360 1.01833 0.80692 1.89308 1.90706 1.27258 1.22955 0.93670 0.94092 0.93468 0.95513 0.92027 0.93238 0.85163 0.92901 0.95357 0.90927 0.90258 0.89226 0.90111 0.88633 0.88377 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.39 71.98 0.68 -4.35 16 2 C -0.14 -6.58 5.48 30.59 0.17 -6.41 16 3 C 0.22 11.42 2.14 44.17 0.09 11.52 16 4 H 0.00 -0.11 7.12 -2.38 -0.02 -0.13 16 5 C -0.50 -28.14 7.35 25.60 0.19 -27.95 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.01 0.78 5.23 84.66 0.44 1.22 16 8 N -0.92 -53.54 11.38 21.45 0.24 -53.30 16 9 Si 0.95 45.01 29.54 68.60 2.03 47.03 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.68 -30.13 6.03 -473.30 -2.86 -32.99 16 14 C 0.09 3.20 2.34 44.92 0.10 3.30 16 15 H 0.04 1.47 7.10 -2.39 -0.02 1.45 16 16 C -0.12 -4.43 8.98 71.98 0.65 -3.79 16 17 C 0.08 2.32 2.94 31.10 0.09 2.41 16 18 H 0.06 1.79 8.03 -2.39 -0.02 1.77 16 19 C -0.15 -3.23 6.47 31.61 0.20 -3.03 16 20 C -0.14 -2.49 7.09 31.61 0.22 -2.27 16 21 C 0.03 0.66 7.63 72.49 0.55 1.22 16 22 O -0.38 -12.11 10.42 -148.98 -1.55 -13.66 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.04 1.94 7.05 -2.39 -0.02 1.92 16 25 H 0.05 1.81 6.42 -2.39 -0.02 1.80 16 26 H 0.03 1.14 7.37 -2.39 -0.02 1.12 16 27 H 0.06 3.32 6.25 -2.39 -0.01 3.31 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.33 13.93 6.14 -89.69 -0.55 13.38 16 30 H 0.05 2.02 7.54 -2.39 -0.02 2.00 16 31 H 0.03 1.14 7.43 -2.39 -0.02 1.12 16 32 H 0.07 2.11 6.29 -2.39 -0.02 2.10 16 33 H 0.08 1.74 6.01 -2.39 -0.01 1.72 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -62.87 291.47 1.73 -61.14 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.48 Total: 19.91 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 3.39 Total: -28.13 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.61 Total: -86.28 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.55 Total: -13.66 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -62.87 1.73 -61.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035735550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.592 kcal (2) G-P(sol) polarization free energy of solvation -62.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds