Wall clock time and date at job start Sun Mar 29 2020 21:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 H 1.09001 * 109.47323 * 53.02795 * 3 2 1 5 5 C 1.50701 * 109.47112 * 173.02659 * 3 2 1 6 6 H 1.08000 * 119.99727 * 115.70519 * 5 3 2 7 7 C 1.37872 * 119.99921 * 295.70171 * 5 3 2 8 8 N 1.31519 * 120.00107 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47093 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47368 * 119.99639 * 9 7 5 12 12 H 1.48505 * 109.47218 * 240.00191 * 9 7 5 13 13 N 1.46903 * 109.46924 * 293.02752 * 3 2 1 14 14 C 1.46900 * 110.99867 * 80.96766 * 13 3 2 15 15 C 1.46904 * 110.99699 * 204.91973 * 13 3 2 16 16 C 1.53173 * 109.54391 * 301.84279 * 15 13 3 17 17 C 1.53104 * 109.15643 * 183.24225 * 16 15 13 18 18 O 1.42903 * 109.48763 * 57.47296 * 17 16 15 19 19 C 1.42896 * 114.09878 * 298.88920 * 18 17 16 20 20 C 1.53090 * 109.41431 * 61.15668 * 19 18 17 21 21 H 1.08995 * 109.46978 * 79.84353 * 1 2 3 22 22 H 1.08995 * 109.46770 * 319.83886 * 1 2 3 23 23 H 1.09002 * 109.46529 * 199.83775 * 1 2 3 24 24 H 1.09006 * 109.46725 * 119.99804 * 2 1 3 25 25 H 1.09002 * 109.47399 * 239.99607 * 2 1 3 26 26 H 0.97003 * 119.99689 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.46973 * 66.21044 * 14 13 3 28 28 H 1.09001 * 109.46806 * 186.21124 * 14 13 3 29 29 H 1.08997 * 109.46840 * 306.20505 * 14 13 3 30 30 H 1.09005 * 109.54263 * 62.01853 * 15 13 3 31 31 H 1.09000 * 109.52594 * 303.06157 * 16 15 13 32 32 H 1.08997 * 109.52407 * 63.24923 * 16 15 13 33 33 H 1.09009 * 109.40619 * 297.49131 * 17 16 15 34 34 H 1.08997 * 109.49492 * 177.51246 * 17 16 15 35 35 H 1.08996 * 109.48539 * 301.17864 * 19 18 17 36 36 H 1.09000 * 109.49337 * 181.14174 * 19 18 17 37 37 H 1.09005 * 109.52666 * 182.48324 * 20 19 18 38 38 H 1.09003 * 109.57529 * 62.32816 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5785 1.9911 0.8210 5 6 3.5372 1.4460 0.1725 6 1 4.1710 1.8185 -0.6186 7 6 4.0976 0.9737 1.3403 8 7 3.3257 0.5197 2.3035 9 14 5.9533 0.9787 1.5544 10 1 6.5908 1.5354 0.3343 11 1 6.3140 1.8149 2.7274 12 1 6.4303 -0.4108 1.7715 13 7 1.6925 2.0847 -1.2747 14 6 0.2985 2.5483 -1.2677 15 6 2.6131 3.1891 -1.5759 16 6 2.5714 4.2154 -0.4397 17 6 3.4716 5.4004 -0.7996 18 8 3.0409 5.9671 -2.0388 19 6 3.1049 5.0660 -3.1460 20 6 2.1884 3.8687 -2.8813 21 1 -0.3633 0.1812 -1.0115 22 1 -0.3633 0.7854 0.6628 23 1 -0.3632 -0.9667 0.3488 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 3.7201 0.1878 3.1253 27 1 0.1858 3.3495 -0.5373 28 1 0.0341 2.9194 -2.2578 29 1 -0.3585 1.7200 -1.0028 30 1 3.6264 2.8011 -1.6798 31 1 1.5483 4.5654 -0.3022 32 1 2.9261 3.7535 0.4817 33 1 4.5016 5.0567 -0.8956 34 1 3.4116 6.1543 -0.0148 35 1 4.1300 4.7179 -3.2726 36 1 2.7806 5.5788 -4.0515 37 1 2.2693 3.1589 -3.7046 38 1 1.1569 4.2104 -2.7952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036321138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:15 Heat of formation + Delta-G solvation = -36.560739 kcal Electronic energy + Delta-G solvation = -17385.416787 eV Core-core repulsion = 14842.262188 eV Total energy + Delta-G solvation = -2543.154599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.33210 -36.91451 -33.37861 -31.99263 -30.66237 -29.72105 -27.86609 -24.67902 -23.72196 -23.04930 -21.81593 -19.63968 -18.80913 -16.53894 -15.68266 -15.59495 -15.24024 -14.39125 -14.23993 -13.68897 -13.42760 -13.14366 -12.91574 -12.47850 -12.00645 -11.86171 -11.69154 -11.22946 -10.98723 -10.92330 -10.78118 -10.69879 -10.45484 -10.20397 -9.97887 -9.83561 -9.57438 -9.27060 -9.04651 -8.60658 -8.44089 -7.05505 -6.06367 -4.10257 3.25050 3.34159 3.36728 4.25432 4.37192 4.99408 5.25769 5.34446 5.42097 5.52812 5.67174 5.81268 5.89017 5.99681 6.08863 6.11944 6.23693 6.26248 6.28542 6.35162 6.43508 6.48484 6.61749 6.65978 6.88518 6.97821 7.05098 7.16774 7.38099 7.55789 7.60889 7.76015 7.84177 8.15302 8.33043 8.63170 8.98292 9.54743 11.00868 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.012066 C = 0.008506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.073530 B = 2319.952256 C = 3290.931420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.007 0.993 5 C -0.514 4.514 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.531 5.531 14 C -0.001 4.001 15 C 0.096 3.904 16 C -0.183 4.183 17 C 0.065 3.935 18 O -0.393 6.393 19 C 0.064 3.936 20 C -0.154 4.154 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.030 0.970 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 5.299 -6.436 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C 0.110 3.890 4 H 0.025 0.975 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.149 4.149 15 C -0.012 4.012 16 C -0.222 4.222 17 C -0.012 4.012 18 O -0.312 6.312 19 C -0.013 4.013 20 C -0.192 4.192 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.090 5.028 -6.632 8.580 hybrid contribution 0.942 0.234 0.972 1.373 sum -1.149 5.262 -5.660 7.813 Atomic orbital electron populations 1.22083 0.99737 0.99248 0.99484 1.21512 0.91448 0.99684 1.01748 1.19291 0.95122 0.90641 0.83901 0.97531 1.21429 0.91329 1.41468 1.00984 0.91527 1.24937 0.97772 0.95266 0.95994 1.69939 1.34475 1.42060 1.06161 0.86590 0.85956 0.77760 0.78045 1.19754 1.21128 1.21016 1.62317 1.00361 1.26011 1.36746 1.22914 0.92828 0.99866 0.99287 1.21617 0.98819 0.89371 0.91437 1.22857 0.99735 0.96729 1.02896 1.22551 0.97242 0.96008 0.85360 1.87830 1.87550 1.38604 1.17243 1.22507 0.98688 0.90979 0.89115 1.22404 1.00078 0.97247 0.99516 0.93485 0.93949 0.95074 0.89693 0.94087 0.93027 0.96755 0.93243 0.90190 0.88935 0.92597 0.88184 0.93379 0.89820 0.93531 0.89725 0.91000 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.27 37.16 0.31 -2.62 16 2 C -0.11 -2.47 5.49 -26.73 -0.15 -2.62 16 3 C 0.22 5.21 0.98 -68.86 -0.07 5.14 16 4 H 0.01 0.19 7.46 -51.93 -0.39 -0.20 16 5 C -0.51 -13.25 6.43 -34.44 -0.22 -13.47 16 6 H 0.07 1.71 5.30 -52.49 -0.28 1.44 16 7 C 0.06 1.65 5.29 -17.82 -0.09 1.55 16 8 N -0.89 -24.53 11.63 55.43 0.64 -23.88 16 9 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.53 -11.14 4.65 -228.07 -1.06 -12.20 16 14 C 0.00 -0.01 8.28 60.06 0.50 0.49 16 15 C 0.10 1.87 1.87 -67.53 -0.13 1.74 16 16 C -0.18 -3.52 4.70 -26.59 -0.12 -3.64 16 17 C 0.07 1.10 6.84 37.21 0.25 1.36 16 18 O -0.39 -6.64 10.77 -35.23 -0.38 -7.02 16 19 C 0.06 0.95 6.84 37.20 0.25 1.21 16 20 C -0.15 -2.50 5.09 -26.59 -0.14 -2.63 16 21 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 22 H 0.04 0.84 7.38 -51.93 -0.38 0.46 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 2.22 6.29 -51.93 -0.33 1.90 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.01 0.27 6.31 -51.93 -0.33 -0.06 16 28 H 0.05 0.82 6.29 -51.93 -0.33 0.49 16 29 H 0.08 1.45 3.60 -51.93 -0.19 1.26 16 30 H 0.09 1.97 5.67 -51.93 -0.29 1.68 16 31 H 0.06 1.08 6.38 -51.93 -0.33 0.75 16 32 H 0.10 2.22 6.09 -51.93 -0.32 1.90 16 33 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.07 6.21 -51.93 -0.32 0.75 16 LS Contribution 276.60 15.07 4.17 4.17 Total: -1.00 -27.06 276.60 -7.16 -34.21 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.90 Total: 2.59 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 0.40 Total: -13.49 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.42 Total: -36.08 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.38 Total: -7.02 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.06 -7.16 -34.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036321138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.348 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds