Wall clock time and date at job start Sun Mar 29 2020 21:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 H 1.09001 * 109.47323 * 53.02795 * 3 2 1 5 5 C 1.50701 * 109.47112 * 173.02659 * 3 2 1 6 6 H 1.08000 * 119.99727 * 115.70519 * 5 3 2 7 7 C 1.37872 * 119.99921 * 295.70171 * 5 3 2 8 8 N 1.31519 * 120.00107 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47093 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47368 * 119.99639 * 9 7 5 12 12 H 1.48505 * 109.47218 * 240.00191 * 9 7 5 13 13 N 1.46903 * 109.46924 * 293.02752 * 3 2 1 14 14 C 1.46900 * 110.99867 * 80.96766 * 13 3 2 15 15 C 1.46904 * 110.99699 * 204.91973 * 13 3 2 16 16 C 1.53173 * 109.54391 * 301.84279 * 15 13 3 17 17 C 1.53104 * 109.15643 * 183.24225 * 16 15 13 18 18 O 1.42903 * 109.48763 * 57.47296 * 17 16 15 19 19 C 1.42896 * 114.09878 * 298.88920 * 18 17 16 20 20 C 1.53090 * 109.41431 * 61.15668 * 19 18 17 21 21 H 1.08995 * 109.46978 * 79.84353 * 1 2 3 22 22 H 1.08995 * 109.46770 * 319.83886 * 1 2 3 23 23 H 1.09002 * 109.46529 * 199.83775 * 1 2 3 24 24 H 1.09006 * 109.46725 * 119.99804 * 2 1 3 25 25 H 1.09002 * 109.47399 * 239.99607 * 2 1 3 26 26 H 0.97003 * 119.99689 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.46973 * 66.21044 * 14 13 3 28 28 H 1.09001 * 109.46806 * 186.21124 * 14 13 3 29 29 H 1.08997 * 109.46840 * 306.20505 * 14 13 3 30 30 H 1.09005 * 109.54263 * 62.01853 * 15 13 3 31 31 H 1.09000 * 109.52594 * 303.06157 * 16 15 13 32 32 H 1.08997 * 109.52407 * 63.24923 * 16 15 13 33 33 H 1.09009 * 109.40619 * 297.49131 * 17 16 15 34 34 H 1.08997 * 109.49492 * 177.51246 * 17 16 15 35 35 H 1.08996 * 109.48539 * 301.17864 * 19 18 17 36 36 H 1.09000 * 109.49337 * 181.14174 * 19 18 17 37 37 H 1.09005 * 109.52666 * 182.48324 * 20 19 18 38 38 H 1.09003 * 109.57529 * 62.32816 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5785 1.9911 0.8210 5 6 3.5372 1.4460 0.1725 6 1 4.1710 1.8185 -0.6186 7 6 4.0976 0.9737 1.3403 8 7 3.3257 0.5197 2.3035 9 14 5.9533 0.9787 1.5544 10 1 6.5908 1.5354 0.3343 11 1 6.3140 1.8149 2.7274 12 1 6.4303 -0.4108 1.7715 13 7 1.6925 2.0847 -1.2747 14 6 0.2985 2.5483 -1.2677 15 6 2.6131 3.1891 -1.5759 16 6 2.5714 4.2154 -0.4397 17 6 3.4716 5.4004 -0.7996 18 8 3.0409 5.9671 -2.0388 19 6 3.1049 5.0660 -3.1460 20 6 2.1884 3.8687 -2.8813 21 1 -0.3633 0.1812 -1.0115 22 1 -0.3633 0.7854 0.6628 23 1 -0.3632 -0.9667 0.3488 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 3.7201 0.1878 3.1253 27 1 0.1858 3.3495 -0.5373 28 1 0.0341 2.9194 -2.2578 29 1 -0.3585 1.7200 -1.0028 30 1 3.6264 2.8011 -1.6798 31 1 1.5483 4.5654 -0.3022 32 1 2.9261 3.7535 0.4817 33 1 4.5016 5.0567 -0.8956 34 1 3.4116 6.1543 -0.0148 35 1 4.1300 4.7179 -3.2726 36 1 2.7806 5.5788 -4.0515 37 1 2.2693 3.1589 -3.7046 38 1 1.1569 4.2104 -2.7952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036321138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:14 Heat of formation + Delta-G solvation = -54.145441 kcal Electronic energy + Delta-G solvation = -17386.179317 eV Core-core repulsion = 14842.262188 eV Total energy + Delta-G solvation = -2543.917129 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80859 -38.47704 -35.14555 -33.82831 -32.01124 -31.30302 -29.67204 -26.31268 -25.45650 -24.44432 -23.38334 -21.37788 -20.44483 -18.33985 -17.36485 -16.93750 -16.79761 -16.17627 -15.62116 -15.37385 -15.04279 -14.73495 -14.39344 -14.13334 -13.63313 -13.58812 -13.07463 -13.03152 -12.78167 -12.61202 -12.50249 -12.20971 -12.09237 -11.80536 -11.58657 -11.54419 -11.28790 -10.74439 -10.68759 -10.44215 -10.37394 -8.76884 -8.09989 -6.18656 1.38314 1.42008 1.51160 2.42152 2.99458 3.20352 3.43457 3.96605 4.05440 4.17855 4.34105 4.37068 4.51051 4.53785 4.63032 4.66273 4.70948 4.77629 4.82227 4.83378 4.93097 5.02731 5.08345 5.16284 5.21238 5.34121 5.42197 5.44073 5.58114 5.72047 5.76745 5.90523 6.28103 6.29302 6.45768 6.84314 6.99240 7.49663 8.97059 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.012066 C = 0.008506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.073530 B = 2319.952256 C = 3290.931420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.030 1.030 5 C -0.517 4.517 6 H 0.065 0.935 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.536 5.536 14 C 0.001 3.999 15 C 0.093 3.907 16 C -0.174 4.174 17 C 0.071 3.929 18 O -0.399 6.399 19 C 0.062 3.938 20 C -0.144 4.144 21 H 0.067 0.933 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.035 0.965 26 H 0.259 0.741 27 H 0.006 0.994 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 6.147 -8.186 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.142 4.142 3 C 0.119 3.881 4 H -0.012 1.012 5 C -0.555 4.555 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.772 3.228 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.259 5.259 14 C -0.146 4.146 15 C -0.016 4.016 16 C -0.214 4.214 17 C -0.006 4.006 18 O -0.318 6.318 19 C -0.015 4.015 20 C -0.182 4.182 21 H 0.086 0.914 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.158 5.887 -8.403 10.485 hybrid contribution 0.933 -0.021 1.481 1.750 sum -1.226 5.866 -6.922 9.156 Atomic orbital electron populations 1.21941 0.96725 0.99991 1.00709 1.21374 0.94197 0.98768 0.99824 1.19037 0.93999 0.90837 0.84267 1.01234 1.21688 0.92481 1.40572 1.00809 0.91710 1.25619 1.01533 0.95263 0.95918 1.70064 1.35985 1.43164 1.06543 0.85686 0.81487 0.77536 0.78063 1.18961 1.21005 1.21031 1.62280 1.01981 1.27144 1.34476 1.22952 0.91329 0.99824 1.00533 1.21631 0.97508 0.89051 0.93374 1.22690 0.99857 0.97562 1.01254 1.22485 0.96521 0.95395 0.86215 1.87833 1.87507 1.39084 1.17388 1.22716 0.98853 0.90480 0.89475 1.22329 1.00528 0.97787 0.97593 0.91415 0.94513 0.93545 0.92849 0.94633 0.93219 0.97581 0.90665 0.89735 0.91181 0.92983 0.91898 0.93285 0.88358 0.92940 0.86495 0.89840 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.27 71.98 0.59 -4.68 16 2 C -0.10 -4.89 5.49 30.60 0.17 -4.72 16 3 C 0.23 11.08 0.98 44.17 0.04 11.13 16 4 H -0.03 -1.67 7.46 -2.39 -0.02 -1.69 16 5 C -0.52 -27.23 6.43 25.60 0.16 -27.07 16 6 H 0.06 3.38 5.30 -2.91 -0.02 3.37 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -52.22 11.63 21.45 0.25 -51.98 16 9 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.54 -22.20 4.65 -875.49 -4.07 -26.27 16 14 C 0.00 0.05 8.28 127.69 1.06 1.11 16 15 C 0.09 3.54 1.87 45.03 0.08 3.63 16 16 C -0.17 -6.70 4.70 30.69 0.14 -6.56 16 17 C 0.07 2.31 6.84 72.02 0.49 2.80 16 18 O -0.40 -12.43 10.77 -148.98 -1.60 -14.04 16 19 C 0.06 1.62 6.84 72.01 0.49 2.11 16 20 C -0.14 -4.28 5.09 30.68 0.16 -4.13 16 21 H 0.07 2.32 6.37 -2.39 -0.02 2.31 16 22 H 0.04 1.44 7.38 -2.39 -0.02 1.42 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 2.87 6.29 -2.38 -0.01 2.85 16 25 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.01 0.22 6.31 -2.39 -0.02 0.20 16 28 H 0.07 2.28 6.29 -2.39 -0.02 2.27 16 29 H 0.08 2.91 3.60 -2.39 -0.01 2.90 16 30 H 0.07 2.98 5.67 -2.38 -0.01 2.97 16 31 H 0.05 2.01 6.38 -2.39 -0.02 1.99 16 32 H 0.06 2.88 6.09 -2.39 -0.01 2.87 16 33 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.10 2.87 8.14 -2.39 -0.02 2.86 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.07 2.03 6.21 -2.39 -0.01 2.02 16 Total: -1.00 -58.52 276.60 1.48 -57.04 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 1.04 Total: 15.36 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 3.85 Total: -25.10 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -3.82 Total: -78.24 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -1.60 Total: -14.04 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -58.52 1.48 -57.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036321138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.899 kcal (2) G-P(sol) polarization free energy of solvation -58.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds