Wall clock time and date at job start Sun Mar 29 2020 21:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46952 * 2 1 4 4 H 1.09003 * 109.47151 * 304.32049 * 3 2 1 5 5 C 1.50702 * 109.46703 * 184.32188 * 3 2 1 6 6 H 1.08004 * 120.00123 * 242.66278 * 5 3 2 7 7 C 1.37879 * 120.00143 * 62.66892 * 5 3 2 8 8 N 1.31519 * 119.99760 * 194.81932 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 14.81698 * 7 5 3 10 10 H 1.48502 * 109.46643 * 93.75528 * 9 7 5 11 11 H 1.48500 * 109.47227 * 213.75046 * 9 7 5 12 12 H 1.48492 * 109.47014 * 333.75428 * 9 7 5 13 13 N 1.46895 * 109.47064 * 64.32635 * 3 2 1 14 14 C 1.46898 * 111.00267 * 62.54666 * 13 3 2 15 15 C 1.46897 * 110.99955 * 186.50335 * 13 3 2 16 16 C 1.53178 * 109.54328 * 58.42344 * 15 13 3 17 17 C 1.53283 * 109.06556 * 176.85328 * 16 15 13 18 18 O 1.42905 * 109.46166 * 302.44498 * 17 16 15 19 19 C 1.42903 * 114.09560 * 61.15272 * 18 17 16 20 20 C 1.53087 * 109.41930 * 298.84566 * 19 18 17 21 21 H 1.08998 * 109.47357 * 304.71310 * 1 2 3 22 22 H 1.09000 * 109.47250 * 64.71308 * 1 2 3 23 23 H 1.09003 * 109.47034 * 184.70790 * 1 2 3 24 24 H 1.09000 * 109.47294 * 240.00375 * 2 1 3 25 25 H 1.08999 * 109.47405 * 120.00420 * 2 1 3 26 26 H 0.97008 * 119.99549 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47018 * 183.95223 * 14 13 3 28 28 H 1.08993 * 109.47252 * 303.95520 * 14 13 3 29 29 H 1.08998 * 109.46974 * 63.96042 * 14 13 3 30 30 H 1.09001 * 109.54324 * 298.24950 * 15 13 3 31 31 H 1.08995 * 109.52612 * 296.84037 * 16 15 13 32 32 H 1.09001 * 109.52553 * 57.02877 * 16 15 13 33 33 H 1.08995 * 109.46259 * 182.44877 * 17 16 15 34 34 H 1.09000 * 109.46586 * 62.44590 * 17 16 15 35 35 H 1.09004 * 109.48106 * 178.85958 * 19 18 17 36 36 H 1.09002 * 109.48904 * 58.83849 * 19 18 17 37 37 H 1.09002 * 109.52148 * 297.70365 * 20 19 18 38 38 H 1.09002 * 109.57557 * 177.54600 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6147 1.9782 -0.8488 5 6 3.5432 1.4438 -0.1071 6 1 4.1413 1.8528 0.6938 7 6 4.1550 0.9230 -1.2276 8 7 5.4422 0.6538 -1.2087 9 14 3.1555 0.5997 -2.7723 10 1 3.2431 1.7766 -3.6737 11 1 3.6925 -0.5974 -3.4678 12 1 1.7368 0.3632 -2.4034 13 7 1.6374 2.1042 1.2482 14 6 2.2425 1.4442 2.4128 15 6 1.9749 3.5335 1.2189 16 6 1.2801 4.1997 0.0274 17 6 1.5754 5.7037 0.0523 18 8 1.1354 6.2547 1.2953 19 6 1.7853 5.7013 2.4414 20 6 1.4984 4.1993 2.5135 21 1 -0.3634 0.5852 0.8447 22 1 -0.3634 0.4390 -0.9292 23 1 -0.3633 -1.0242 0.0843 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 5.8725 0.2870 -1.9970 27 1 1.8731 1.9094 3.3266 28 1 1.9768 0.3871 2.4101 29 1 3.3266 1.5465 2.3658 30 1 3.0544 3.6515 1.1241 31 1 1.6549 3.7683 -0.9007 32 1 0.2042 4.0389 0.0964 33 1 1.0485 6.1909 -0.7680 34 1 2.6477 5.8651 -0.0576 35 1 1.4096 6.1868 3.3421 36 1 2.8605 5.8626 2.3631 37 1 0.4269 4.0385 2.6328 38 1 2.0283 3.7666 3.3621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036321140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:16 Heat of formation + Delta-G solvation = -44.309496 kcal Electronic energy + Delta-G solvation = -17300.002835 eV Core-core repulsion = 14756.512224 eV Total energy + Delta-G solvation = -2543.490611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.27074 -37.09393 -33.45080 -31.98453 -30.91761 -30.39429 -27.37354 -25.41372 -23.60399 -22.69323 -22.02799 -19.82322 -18.84761 -16.79023 -16.23855 -15.67262 -15.00657 -14.62491 -14.22082 -13.96155 -13.74179 -12.98242 -12.91464 -12.52921 -12.34697 -11.98614 -11.74053 -11.49912 -11.15465 -10.99908 -10.90445 -10.83719 -10.54617 -10.23826 -9.89271 -9.83779 -9.60265 -9.53127 -9.33131 -9.08693 -8.50280 -7.13176 -6.16328 -4.11960 3.23687 3.34390 3.37861 4.14242 4.37303 4.81469 5.13177 5.19632 5.36124 5.37659 5.57309 5.68196 5.83717 5.88207 5.96647 6.01516 6.11967 6.20204 6.21989 6.29445 6.31333 6.42596 6.47775 6.63892 6.71448 6.76527 6.85851 6.88521 7.01770 7.22358 7.29878 7.45972 7.58561 8.11487 8.18471 8.43347 8.89536 9.50899 10.96519 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.010014 C = 0.009155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.682866 B = 2795.521915 C = 3057.605031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.526 5.526 14 C 0.029 3.971 15 C 0.091 3.909 16 C -0.145 4.145 17 C 0.063 3.937 18 O -0.389 6.389 19 C 0.064 3.936 20 C -0.149 4.149 21 H 0.060 0.940 22 H 0.038 0.962 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.263 0.737 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 5.596 4.284 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C 0.074 3.926 4 H 0.055 0.945 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.249 5.249 14 C -0.119 4.119 15 C -0.018 4.018 16 C -0.183 4.183 17 C -0.014 4.014 18 O -0.308 6.308 19 C -0.013 4.013 20 C -0.187 4.187 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.440 5.607 4.235 10.982 hybrid contribution 0.922 -0.529 -1.078 1.514 sum -7.518 5.078 3.157 9.606 Atomic orbital electron populations 1.21746 0.97809 0.99312 1.01254 1.21977 0.93569 0.99105 1.00909 1.19661 0.94201 0.90595 0.88191 0.94502 1.21555 0.90667 1.41273 1.05123 0.90902 1.24927 0.94625 0.94129 0.98724 1.70001 1.10698 1.42817 1.29386 0.87301 0.82438 0.77929 0.83822 1.20805 1.21415 1.17003 1.62437 1.57697 1.00841 1.03937 1.22253 0.98200 0.99008 0.92487 1.21399 0.98021 0.89207 0.93160 1.22253 1.01533 0.94572 0.99931 1.22634 0.99102 0.93826 0.85886 1.87847 1.65154 1.63386 1.14450 1.22542 0.96646 0.93554 0.88605 1.22309 1.02542 0.95114 0.98737 0.92049 0.94251 0.94980 0.92873 0.92718 0.92765 0.93678 0.92063 0.94710 0.93179 0.90179 0.91150 0.89319 0.93280 0.89459 0.93531 0.90880 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.85 37.16 0.37 -2.27 16 2 C -0.12 -2.52 4.48 -26.73 -0.12 -2.64 16 3 C 0.18 4.09 1.03 -68.86 -0.07 4.02 16 4 H 0.04 0.86 4.80 -51.93 -0.25 0.61 16 5 C -0.55 -14.57 7.59 -34.44 -0.26 -14.83 16 6 H 0.07 2.13 6.07 -52.48 -0.32 1.82 16 7 C 0.08 2.20 5.34 -17.82 -0.10 2.10 16 8 N -0.89 -26.58 13.96 55.43 0.77 -25.80 16 9 Si 0.86 20.66 25.74 -169.99 -4.38 16.29 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.25 -5.57 5.35 56.52 0.30 -5.27 16 13 N -0.53 -10.47 3.95 -228.08 -0.90 -11.37 16 14 C 0.03 0.55 8.51 60.06 0.51 1.06 16 15 C 0.09 1.69 1.77 -67.53 -0.12 1.57 16 16 C -0.14 -2.52 5.07 -26.49 -0.13 -2.66 16 17 C 0.06 0.96 6.85 37.30 0.26 1.21 16 18 O -0.39 -6.13 10.77 -35.23 -0.38 -6.51 16 19 C 0.06 0.89 6.84 37.20 0.25 1.15 16 20 C -0.15 -2.29 5.02 -26.59 -0.13 -2.42 16 21 H 0.06 1.10 7.60 -51.93 -0.39 0.70 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 1.21 4.62 -51.93 -0.24 0.97 16 25 H 0.05 1.17 6.17 -51.93 -0.32 0.85 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.04 0.74 6.34 -51.93 -0.33 0.41 16 28 H 0.06 1.16 6.09 -51.93 -0.32 0.84 16 29 H 0.03 0.74 6.41 -51.93 -0.33 0.41 16 30 H 0.05 1.07 7.00 -51.93 -0.36 0.70 16 31 H 0.08 1.52 6.43 -51.93 -0.33 1.19 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.01 6.56 -51.93 -0.34 0.66 16 LS Contribution 277.86 15.07 4.19 4.19 Total: -1.00 -28.75 277.86 -6.40 -35.15 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.16 Total: 1.76 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 0.45 Total: -13.71 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.13 Total: -37.17 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.38 Total: -6.51 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.38 Total: 16.29 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.75 -6.40 -35.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036321140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.157 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds