Wall clock time and date at job start Sun Mar 29 2020 21:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46952 * 2 1 4 4 H 1.09003 * 109.47151 * 304.32049 * 3 2 1 5 5 C 1.50702 * 109.46703 * 184.32188 * 3 2 1 6 6 H 1.08004 * 120.00123 * 242.66278 * 5 3 2 7 7 C 1.37879 * 120.00143 * 62.66892 * 5 3 2 8 8 N 1.31519 * 119.99760 * 194.81932 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 14.81698 * 7 5 3 10 10 H 1.48502 * 109.46643 * 93.75528 * 9 7 5 11 11 H 1.48500 * 109.47227 * 213.75046 * 9 7 5 12 12 H 1.48492 * 109.47014 * 333.75428 * 9 7 5 13 13 N 1.46895 * 109.47064 * 64.32635 * 3 2 1 14 14 C 1.46898 * 111.00267 * 62.54666 * 13 3 2 15 15 C 1.46897 * 110.99955 * 186.50335 * 13 3 2 16 16 C 1.53178 * 109.54328 * 58.42344 * 15 13 3 17 17 C 1.53283 * 109.06556 * 176.85328 * 16 15 13 18 18 O 1.42905 * 109.46166 * 302.44498 * 17 16 15 19 19 C 1.42903 * 114.09560 * 61.15272 * 18 17 16 20 20 C 1.53087 * 109.41930 * 298.84566 * 19 18 17 21 21 H 1.08998 * 109.47357 * 304.71310 * 1 2 3 22 22 H 1.09000 * 109.47250 * 64.71308 * 1 2 3 23 23 H 1.09003 * 109.47034 * 184.70790 * 1 2 3 24 24 H 1.09000 * 109.47294 * 240.00375 * 2 1 3 25 25 H 1.08999 * 109.47405 * 120.00420 * 2 1 3 26 26 H 0.97008 * 119.99549 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47018 * 183.95223 * 14 13 3 28 28 H 1.08993 * 109.47252 * 303.95520 * 14 13 3 29 29 H 1.08998 * 109.46974 * 63.96042 * 14 13 3 30 30 H 1.09001 * 109.54324 * 298.24950 * 15 13 3 31 31 H 1.08995 * 109.52612 * 296.84037 * 16 15 13 32 32 H 1.09001 * 109.52553 * 57.02877 * 16 15 13 33 33 H 1.08995 * 109.46259 * 182.44877 * 17 16 15 34 34 H 1.09000 * 109.46586 * 62.44590 * 17 16 15 35 35 H 1.09004 * 109.48106 * 178.85958 * 19 18 17 36 36 H 1.09002 * 109.48904 * 58.83849 * 19 18 17 37 37 H 1.09002 * 109.52148 * 297.70365 * 20 19 18 38 38 H 1.09002 * 109.57557 * 177.54600 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6147 1.9782 -0.8488 5 6 3.5432 1.4438 -0.1071 6 1 4.1413 1.8528 0.6938 7 6 4.1550 0.9230 -1.2276 8 7 5.4422 0.6538 -1.2087 9 14 3.1555 0.5997 -2.7723 10 1 3.2431 1.7766 -3.6737 11 1 3.6925 -0.5974 -3.4678 12 1 1.7368 0.3632 -2.4034 13 7 1.6374 2.1042 1.2482 14 6 2.2425 1.4442 2.4128 15 6 1.9749 3.5335 1.2189 16 6 1.2801 4.1997 0.0274 17 6 1.5754 5.7037 0.0523 18 8 1.1354 6.2547 1.2953 19 6 1.7853 5.7013 2.4414 20 6 1.4984 4.1993 2.5135 21 1 -0.3634 0.5852 0.8447 22 1 -0.3634 0.4390 -0.9292 23 1 -0.3633 -1.0242 0.0843 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 5.8725 0.2870 -1.9970 27 1 1.8731 1.9094 3.3266 28 1 1.9768 0.3871 2.4101 29 1 3.3266 1.5465 2.3658 30 1 3.0544 3.6515 1.1241 31 1 1.6549 3.7683 -0.9007 32 1 0.2042 4.0389 0.0964 33 1 1.0485 6.1909 -0.7680 34 1 2.6477 5.8651 -0.0576 35 1 1.4096 6.1868 3.3421 36 1 2.8605 5.8626 2.3631 37 1 0.4269 4.0385 2.6328 38 1 2.0283 3.7666 3.3621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036321140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:16 Heat of formation + Delta-G solvation = -64.141561 kcal Electronic energy + Delta-G solvation = -17300.862818 eV Core-core repulsion = 14756.512224 eV Total energy + Delta-G solvation = -2544.350593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66210 -38.62654 -35.12306 -33.94677 -32.25568 -31.79588 -29.20567 -26.97188 -25.18975 -24.13220 -23.52407 -21.31755 -20.60793 -18.73513 -17.69432 -16.91942 -16.66967 -16.22433 -15.60407 -15.55638 -15.34142 -14.69781 -14.44421 -14.18236 -13.79755 -13.62354 -13.28830 -13.11749 -12.69910 -12.68678 -12.44962 -12.23638 -12.07328 -12.03778 -11.52051 -11.37484 -11.27258 -11.15960 -10.94652 -10.60514 -10.49534 -8.88500 -8.32618 -6.31116 1.30967 1.36338 1.45751 2.33441 2.96412 3.03197 3.28887 3.87098 4.04163 4.13027 4.30546 4.34909 4.40643 4.48766 4.57480 4.64704 4.70830 4.73289 4.78729 4.84419 4.92362 4.97595 5.05216 5.12024 5.18825 5.22949 5.28065 5.33043 5.43903 5.53123 5.59818 5.67611 6.18758 6.26004 6.41542 6.53798 6.76090 7.35364 8.83925 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.010014 C = 0.009155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.682866 B = 2795.521915 C = 3057.605031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.185 3.815 4 H 0.037 0.963 5 C -0.538 4.538 6 H 0.031 0.969 7 C 0.022 3.978 8 N -0.943 5.943 9 Si 0.918 3.082 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.219 1.219 13 N -0.517 5.517 14 C 0.034 3.966 15 C 0.087 3.913 16 C -0.141 4.141 17 C 0.066 3.934 18 O -0.394 6.394 19 C 0.062 3.938 20 C -0.139 4.139 21 H 0.066 0.934 22 H 0.043 0.957 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.000 1.000 30 H 0.012 0.988 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 6.139 4.500 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.077 3.923 4 H 0.055 0.945 5 C -0.577 4.577 6 H 0.049 0.951 7 C -0.177 4.177 8 N -0.583 5.583 9 Si 0.742 3.258 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.142 1.142 13 N -0.240 5.240 14 C -0.115 4.115 15 C -0.022 4.022 16 C -0.179 4.179 17 C -0.011 4.011 18 O -0.313 6.313 19 C -0.015 4.015 20 C -0.177 4.177 21 H 0.085 0.915 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.019 0.981 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.060 0.940 35 H 0.137 0.863 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.215 6.161 4.471 13.554 hybrid contribution 1.845 -0.663 -1.030 2.215 sum -9.369 5.498 3.440 11.395 Atomic orbital electron populations 1.21642 0.94728 1.01012 1.01734 1.21916 0.96254 0.97529 1.00074 1.19566 0.91152 0.91952 0.89640 0.94544 1.21799 0.92876 1.39498 1.03540 0.95102 1.25748 0.95531 0.94368 1.02013 1.70142 1.12792 1.45055 1.30336 0.86333 0.82273 0.77567 0.79577 1.20527 1.21663 1.14195 1.62498 1.56922 1.01554 1.03021 1.22254 0.96088 0.99527 0.93585 1.21496 0.96055 0.88780 0.95900 1.22209 1.01545 0.95929 0.98238 1.22638 0.99142 0.92495 0.86808 1.87849 1.65342 1.63412 1.14723 1.22698 0.96767 0.92704 0.89299 1.22240 1.02782 0.95866 0.96848 0.91509 0.93795 0.92719 0.94155 0.93280 0.92851 0.90427 0.91919 0.98101 0.97032 0.92277 0.90347 0.86935 0.93968 0.86311 0.93790 0.90132 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.85 71.98 0.71 -3.75 16 2 C -0.12 -4.95 4.48 30.59 0.14 -4.81 16 3 C 0.19 8.29 1.03 44.17 0.05 8.33 16 4 H 0.04 1.66 4.80 -2.39 -0.01 1.65 16 5 C -0.54 -29.57 7.59 25.60 0.19 -29.38 16 6 H 0.03 1.92 6.07 -2.91 -0.02 1.90 16 7 C 0.02 1.23 5.34 84.65 0.45 1.69 16 8 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 9 Si 0.92 42.87 25.74 68.60 1.77 44.64 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.22 -9.22 5.35 99.48 0.53 -8.69 16 13 N -0.52 -20.17 3.95 -875.52 -3.46 -23.63 16 14 C 0.03 1.27 8.51 127.69 1.09 2.36 16 15 C 0.09 3.17 1.77 45.04 0.08 3.25 16 16 C -0.14 -4.75 5.07 30.75 0.16 -4.60 16 17 C 0.07 1.92 6.85 72.08 0.49 2.41 16 18 O -0.39 -11.39 10.77 -148.98 -1.60 -13.00 16 19 C 0.06 1.59 6.84 72.01 0.49 2.08 16 20 C -0.14 -3.98 5.02 30.68 0.15 -3.83 16 21 H 0.07 2.15 7.60 -2.39 -0.02 2.13 16 22 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.76 4.62 -2.39 -0.01 1.75 16 25 H 0.05 2.06 6.17 -2.39 -0.01 2.04 16 26 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 27 H 0.08 2.40 6.34 -2.39 -0.02 2.38 16 28 H 0.06 2.32 6.09 -2.39 -0.01 2.31 16 29 H 0.00 0.02 6.41 -2.39 -0.02 0.00 16 30 H 0.01 0.52 7.00 -2.39 -0.02 0.50 16 31 H 0.06 2.22 6.43 -2.39 -0.02 2.21 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 2.06 6.56 -2.39 -0.02 2.04 16 Total: -1.00 -63.40 277.86 1.85 -61.55 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.85 Total: 14.81 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.00 Total: -26.24 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -3.16 Total: -81.75 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.60 Total: -13.00 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.77 Total: 44.64 kcal Total: -63.40 1.85 -61.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036321140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.595 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds