Wall clock time and date at job start Sun Mar 29 2020 21:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 H 1.09002 * 109.46620 * 57.03917 * 3 2 1 5 5 C 1.50691 * 109.47113 * 177.03732 * 3 2 1 6 6 H 1.08007 * 119.99890 * 114.30928 * 5 3 2 7 7 C 1.37880 * 120.00429 * 294.31611 * 5 3 2 8 8 N 1.31515 * 120.00310 * 154.24510 * 7 5 3 9 9 Si 1.86795 * 119.99451 * 334.24565 * 7 5 3 10 10 H 1.48504 * 109.47103 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47602 * 299.99895 * 9 7 5 12 12 H 1.48504 * 109.47403 * 60.00472 * 9 7 5 13 13 N 1.46900 * 109.47350 * 297.04133 * 3 2 1 14 14 C 1.47009 * 111.00230 * 174.99877 * 13 3 2 15 15 C 1.53102 * 109.26066 * 182.39338 * 14 13 3 16 16 H 1.08993 * 109.50300 * 63.08318 * 15 14 13 17 17 C 1.52995 * 109.50548 * 183.21559 * 15 14 13 18 18 O 1.43020 * 109.25330 * 303.15296 * 15 14 13 19 19 C 1.43012 * 113.74090 * 58.67119 * 18 15 14 20 20 H 1.08995 * 109.51011 * 61.30339 * 19 18 15 21 21 C 1.53006 * 109.50510 * 181.39300 * 19 18 15 22 22 C 1.47015 * 110.99993 * 298.63606 * 13 3 2 23 23 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47119 * 299.99813 * 1 2 3 25 25 H 1.08999 * 109.47085 * 59.99919 * 1 2 3 26 26 H 1.09004 * 109.47051 * 239.99896 * 2 1 3 27 27 H 1.09000 * 109.47159 * 120.00631 * 2 1 3 28 28 H 0.96997 * 119.99808 * 354.96615 * 8 7 5 29 29 H 1.09001 * 109.50566 * 302.32734 * 14 13 3 30 30 H 1.08994 * 109.50712 * 62.41071 * 14 13 3 31 31 H 1.08999 * 109.47156 * 60.00427 * 17 15 14 32 32 H 1.09002 * 109.46846 * 179.97438 * 17 15 14 33 33 H 1.08998 * 109.47364 * 300.00021 * 17 15 14 34 34 H 1.08998 * 109.46915 * 60.00276 * 21 19 18 35 35 H 1.09004 * 109.46924 * 179.97438 * 21 19 18 36 36 H 1.08989 * 109.47112 * 299.99919 * 21 19 18 37 37 H 1.09007 * 109.50258 * 297.54007 * 22 13 3 38 38 H 1.09005 * 109.50743 * 57.67054 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6340 1.9714 0.8623 5 6 3.5452 1.4431 0.0734 6 1 4.1263 1.8136 -0.7582 7 6 4.1807 0.9705 1.2021 8 7 5.4036 0.4942 1.1176 9 14 3.3044 1.0069 2.8514 10 1 4.1966 0.4473 3.8984 11 1 2.9561 2.4087 3.1962 12 1 2.0641 0.1941 2.7711 13 7 1.6097 2.1141 -1.2336 14 6 1.9799 3.5367 -1.2157 15 6 1.4614 4.2096 -2.4894 16 1 0.3726 4.1635 -2.5079 17 6 1.9124 5.6713 -2.5148 18 8 1.9878 3.5274 -3.6309 19 6 1.6458 2.1396 -3.6806 20 1 0.5624 2.0334 -3.7345 21 6 2.2840 1.5001 -4.9154 22 6 2.1662 1.4459 -2.4189 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.8314 0.4074 0.2514 29 1 1.5363 4.0173 -0.3437 30 1 3.0649 3.6299 -1.1698 31 1 3.0013 5.7160 -2.4982 32 1 1.5433 6.1496 -3.4221 33 1 1.5141 6.1897 -1.6426 34 1 3.3675 1.6053 -4.8600 35 1 2.0234 0.4424 -4.9525 36 1 1.9162 1.9970 -5.8130 37 1 3.2543 1.5057 -2.3931 38 1 1.8585 0.4002 -2.4254 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:08 Heat of formation + Delta-G solvation = -55.145208 kcal Electronic energy + Delta-G solvation = -17249.790630 eV Core-core repulsion = 14705.830148 eV Total energy + Delta-G solvation = -2543.960482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.30720 -36.20225 -33.31637 -32.55040 -31.70036 -29.71203 -27.05759 -26.09865 -23.81715 -22.19408 -21.50403 -20.06064 -19.07924 -17.41259 -16.11206 -15.64938 -14.85196 -14.20574 -14.18597 -13.82980 -13.36849 -12.77661 -12.58735 -12.45260 -12.24525 -11.99646 -11.80621 -11.75280 -11.56414 -11.18884 -10.92432 -10.81477 -10.51059 -10.46570 -10.24952 -9.95022 -9.75485 -9.56222 -9.15959 -8.87860 -8.32022 -7.34658 -6.41382 -4.10079 3.38218 3.41985 3.58926 4.05211 4.47408 4.77110 5.12172 5.25087 5.41401 5.46810 5.58503 5.61979 5.78568 5.80956 5.95188 5.97389 6.04691 6.08931 6.17420 6.20533 6.28273 6.31329 6.36815 6.51708 6.65196 6.74574 6.75887 6.80998 6.96328 7.20247 7.25287 7.67181 7.85496 8.04639 8.16245 8.34498 8.89693 9.55799 10.84337 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026276 B = 0.009614 C = 0.009042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.336749 B = 2911.730075 C = 3095.851851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.190 3.810 4 H 0.030 0.970 5 C -0.639 4.639 6 H 0.059 0.941 7 C 0.044 3.956 8 N -0.893 5.893 9 Si 1.032 2.968 10 H -0.286 1.286 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.528 5.528 14 C 0.033 3.967 15 C 0.090 3.910 16 H 0.056 0.944 17 C -0.141 4.141 18 O -0.387 6.387 19 C 0.089 3.911 20 H 0.055 0.945 21 C -0.141 4.141 22 C 0.032 3.968 23 H 0.032 0.968 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.269 0.731 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 3.832 -6.654 11.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.083 3.917 4 H 0.047 0.953 5 C -0.676 4.676 6 H 0.077 0.923 7 C -0.164 4.164 8 N -0.525 5.525 9 Si 0.860 3.140 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.252 5.252 14 C -0.096 4.096 15 C 0.032 3.968 16 H 0.074 0.926 17 C -0.199 4.199 18 O -0.307 6.307 19 C 0.031 3.969 20 H 0.073 0.927 21 C -0.199 4.199 22 C -0.097 4.097 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.026 3.561 -5.194 11.006 hybrid contribution 0.655 0.193 -1.269 1.440 sum -8.371 3.754 -6.463 11.222 Atomic orbital electron populations 1.21749 0.97828 0.99171 1.01330 1.21906 0.93379 0.99125 1.01023 1.19532 0.94517 0.90249 0.87430 0.95264 1.22414 0.91590 1.48490 1.05155 0.92254 1.25644 0.96106 0.91861 1.02753 1.70844 1.15614 1.37371 1.28689 0.84187 0.76030 0.77135 0.76624 1.21158 1.21047 1.20140 1.62606 1.57800 1.01288 1.03468 1.22554 1.00111 0.90347 0.96599 1.22142 0.96990 0.91851 0.85814 0.92601 1.21716 1.02362 0.94020 1.01790 1.87883 1.76587 1.21684 1.44534 1.22172 0.98114 0.81440 0.95195 0.92667 1.21715 1.01665 0.99960 0.96544 1.22614 0.99024 0.98314 0.89742 0.94892 0.94003 0.92467 0.93062 0.92596 0.92124 0.91102 0.93169 0.92000 0.92332 0.91246 0.92042 0.91280 0.92336 0.93236 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.78 37.16 0.36 -2.26 16 2 C -0.12 -2.53 4.95 -26.73 -0.13 -2.66 16 3 C 0.19 4.46 1.37 -68.87 -0.09 4.36 16 4 H 0.03 0.71 6.67 -51.93 -0.35 0.37 16 5 C -0.64 -17.37 7.29 -34.44 -0.25 -17.63 16 6 H 0.06 1.78 6.05 -52.48 -0.32 1.46 16 7 C 0.04 1.24 5.19 -17.82 -0.09 1.15 16 8 N -0.89 -26.93 13.70 55.43 0.76 -26.17 16 9 Si 1.03 24.84 26.56 -169.99 -4.52 20.33 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.19 6.25 56.52 0.35 -5.84 16 13 N -0.53 -11.03 4.08 -227.72 -0.93 -11.96 16 14 C 0.03 0.65 4.66 -3.71 -0.02 0.63 16 15 C 0.09 1.52 3.43 -26.68 -0.09 1.42 16 16 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.14 -1.97 9.57 37.15 0.36 -1.61 16 18 O -0.39 -7.05 10.11 -35.23 -0.36 -7.41 16 19 C 0.09 1.51 3.43 -26.68 -0.09 1.42 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.14 -2.01 9.57 37.16 0.36 -1.65 16 22 C 0.03 0.63 4.28 -3.71 -0.02 0.62 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.02 7.69 -51.93 -0.40 0.62 16 26 H 0.05 1.12 6.23 -51.93 -0.32 0.80 16 27 H 0.06 1.29 5.70 -51.93 -0.30 0.99 16 28 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 29 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 30 H 0.05 1.14 6.98 -51.93 -0.36 0.78 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.74 8.14 -51.94 -0.42 0.32 16 37 H 0.05 1.15 6.38 -51.93 -0.33 0.82 16 38 H 0.08 1.48 6.16 -51.93 -0.32 1.16 16 LS Contribution 288.57 15.07 4.35 4.35 Total: -1.00 -29.15 288.57 -6.95 -36.10 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.55 Total: 0.96 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 0.29 Total: -16.20 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.17 Total: -38.13 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.36 Total: -7.41 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.52 Total: 20.33 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.15 -6.95 -36.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.041 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds