Wall clock time and date at job start Sun Mar 29 2020 21:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 H 1.09002 * 109.46620 * 57.03917 * 3 2 1 5 5 C 1.50691 * 109.47113 * 177.03732 * 3 2 1 6 6 H 1.08007 * 119.99890 * 114.30928 * 5 3 2 7 7 C 1.37880 * 120.00429 * 294.31611 * 5 3 2 8 8 N 1.31515 * 120.00310 * 154.24510 * 7 5 3 9 9 Si 1.86795 * 119.99451 * 334.24565 * 7 5 3 10 10 H 1.48504 * 109.47103 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47602 * 299.99895 * 9 7 5 12 12 H 1.48504 * 109.47403 * 60.00472 * 9 7 5 13 13 N 1.46900 * 109.47350 * 297.04133 * 3 2 1 14 14 C 1.47009 * 111.00230 * 174.99877 * 13 3 2 15 15 C 1.53102 * 109.26066 * 182.39338 * 14 13 3 16 16 H 1.08993 * 109.50300 * 63.08318 * 15 14 13 17 17 C 1.52995 * 109.50548 * 183.21559 * 15 14 13 18 18 O 1.43020 * 109.25330 * 303.15296 * 15 14 13 19 19 C 1.43012 * 113.74090 * 58.67119 * 18 15 14 20 20 H 1.08995 * 109.51011 * 61.30339 * 19 18 15 21 21 C 1.53006 * 109.50510 * 181.39300 * 19 18 15 22 22 C 1.47015 * 110.99993 * 298.63606 * 13 3 2 23 23 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47119 * 299.99813 * 1 2 3 25 25 H 1.08999 * 109.47085 * 59.99919 * 1 2 3 26 26 H 1.09004 * 109.47051 * 239.99896 * 2 1 3 27 27 H 1.09000 * 109.47159 * 120.00631 * 2 1 3 28 28 H 0.96997 * 119.99808 * 354.96615 * 8 7 5 29 29 H 1.09001 * 109.50566 * 302.32734 * 14 13 3 30 30 H 1.08994 * 109.50712 * 62.41071 * 14 13 3 31 31 H 1.08999 * 109.47156 * 60.00427 * 17 15 14 32 32 H 1.09002 * 109.46846 * 179.97438 * 17 15 14 33 33 H 1.08998 * 109.47364 * 300.00021 * 17 15 14 34 34 H 1.08998 * 109.46915 * 60.00276 * 21 19 18 35 35 H 1.09004 * 109.46924 * 179.97438 * 21 19 18 36 36 H 1.08989 * 109.47112 * 299.99919 * 21 19 18 37 37 H 1.09007 * 109.50258 * 297.54007 * 22 13 3 38 38 H 1.09005 * 109.50743 * 57.67054 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6340 1.9714 0.8623 5 6 3.5452 1.4431 0.0734 6 1 4.1263 1.8136 -0.7582 7 6 4.1807 0.9705 1.2021 8 7 5.4036 0.4942 1.1176 9 14 3.3044 1.0069 2.8514 10 1 4.1966 0.4473 3.8984 11 1 2.9561 2.4087 3.1962 12 1 2.0641 0.1941 2.7711 13 7 1.6097 2.1141 -1.2336 14 6 1.9799 3.5367 -1.2157 15 6 1.4614 4.2096 -2.4894 16 1 0.3726 4.1635 -2.5079 17 6 1.9124 5.6713 -2.5148 18 8 1.9878 3.5274 -3.6309 19 6 1.6458 2.1396 -3.6806 20 1 0.5624 2.0334 -3.7345 21 6 2.2840 1.5001 -4.9154 22 6 2.1662 1.4459 -2.4189 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 5.8314 0.4074 0.2514 29 1 1.5363 4.0173 -0.3437 30 1 3.0649 3.6299 -1.1698 31 1 3.0013 5.7160 -2.4982 32 1 1.5433 6.1496 -3.4221 33 1 1.5141 6.1897 -1.6426 34 1 3.3675 1.6053 -4.8600 35 1 2.0234 0.4424 -4.9525 36 1 1.9162 1.9970 -5.8130 37 1 3.2543 1.5057 -2.3931 38 1 1.8585 0.4002 -2.4254 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677372.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:07 Heat of formation + Delta-G solvation = -75.117810 kcal Electronic energy + Delta-G solvation = -17250.656707 eV Core-core repulsion = 14705.830148 eV Total energy + Delta-G solvation = -2544.826559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.84199 -37.89119 -34.66226 -34.58521 -33.42076 -31.03286 -28.87345 -27.56875 -25.56090 -23.86727 -22.88770 -21.57523 -21.00117 -19.42714 -17.54579 -17.24771 -16.40071 -16.01663 -15.83902 -15.35770 -15.01973 -14.53454 -14.10390 -13.95920 -13.70340 -13.48304 -13.34315 -13.02371 -12.86637 -12.71206 -12.58525 -12.41859 -12.28728 -12.05256 -11.88797 -11.62870 -11.37226 -11.29444 -11.08718 -10.49724 -10.39706 -9.30772 -8.58954 -6.36120 1.43894 1.49032 1.68538 2.45994 2.73338 2.96076 3.14600 3.85239 4.06615 4.12288 4.20300 4.21749 4.35998 4.47510 4.49751 4.56666 4.62534 4.68480 4.74385 4.83772 4.86522 4.97035 5.02031 5.03511 5.16826 5.19450 5.21948 5.28629 5.30199 5.44491 5.60346 5.92128 5.97726 6.12738 6.27810 6.37758 6.67791 7.37593 8.55643 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026276 B = 0.009614 C = 0.009042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.336749 B = 2911.730075 C = 3095.851851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C 0.190 3.810 4 H 0.031 0.969 5 C -0.631 4.631 6 H 0.015 0.985 7 C -0.007 4.007 8 N -0.927 5.927 9 Si 1.073 2.927 10 H -0.290 1.290 11 H -0.267 1.267 12 H -0.245 1.245 13 N -0.518 5.518 14 C 0.032 3.968 15 C 0.092 3.908 16 H 0.076 0.924 17 C -0.136 4.136 18 O -0.401 6.401 19 C 0.091 3.909 20 H 0.075 0.925 21 C -0.137 4.137 22 C 0.037 3.963 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.251 0.749 29 H 0.081 0.919 30 H 0.007 0.993 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.003 0.997 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.006 4.277 -6.797 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C 0.082 3.918 4 H 0.049 0.951 5 C -0.669 4.669 6 H 0.033 0.967 7 C -0.208 4.208 8 N -0.561 5.561 9 Si 0.894 3.106 10 H -0.216 1.216 11 H -0.193 1.193 12 H -0.169 1.169 13 N -0.241 5.241 14 C -0.097 4.097 15 C 0.034 3.966 16 H 0.094 0.906 17 C -0.194 4.194 18 O -0.321 6.321 19 C 0.033 3.967 20 H 0.093 0.907 21 C -0.194 4.194 22 C -0.092 4.092 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.026 0.974 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.021 0.979 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.208 4.019 -5.368 13.928 hybrid contribution 1.696 0.083 -1.304 2.141 sum -10.512 4.102 -6.672 13.109 Atomic orbital electron populations 1.21642 0.94350 1.01012 1.02009 1.21795 0.96384 0.97143 0.99957 1.19492 0.91573 0.91932 0.88822 0.95122 1.22550 0.93918 1.47007 1.03426 0.96683 1.27038 0.96037 0.91195 1.06488 1.70977 1.17156 1.40467 1.27531 0.83680 0.76134 0.78540 0.72226 1.21606 1.19257 1.16866 1.62659 1.56888 1.01776 1.02770 1.22651 0.97665 0.90174 0.99207 1.22277 0.97853 0.92830 0.83618 0.90634 1.21731 1.01452 0.92354 1.03855 1.87894 1.77126 1.22200 1.44868 1.22280 0.99213 0.80795 0.94387 0.90673 1.21730 1.00422 1.01197 0.96095 1.22619 0.96218 0.99134 0.91212 0.92520 0.93213 0.91866 0.93983 0.93982 0.93990 0.90095 0.97423 0.93611 0.90297 0.89134 0.93757 0.89400 0.90152 0.97870 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.78 71.98 0.70 -3.68 16 2 C -0.11 -4.83 4.95 30.60 0.15 -4.68 16 3 C 0.19 8.85 1.37 44.17 0.06 8.91 16 4 H 0.03 1.44 6.67 -2.39 -0.02 1.43 16 5 C -0.63 -35.66 7.29 25.60 0.19 -35.48 16 6 H 0.01 0.97 6.05 -2.91 -0.02 0.95 16 7 C -0.01 -0.41 5.19 84.66 0.44 0.03 16 8 N -0.93 -58.32 13.70 21.45 0.29 -58.03 16 9 Si 1.07 49.77 26.56 68.60 1.82 51.60 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.24 -10.11 6.25 99.48 0.62 -9.48 16 13 N -0.52 -21.38 4.08 -874.38 -3.57 -24.95 16 14 C 0.03 1.26 4.66 86.32 0.40 1.66 16 15 C 0.09 2.93 3.43 30.63 0.10 3.04 16 16 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 17 C -0.14 -3.52 9.57 71.98 0.69 -2.84 16 18 O -0.40 -14.11 10.11 -148.98 -1.51 -15.62 16 19 C 0.09 2.96 3.43 30.63 0.10 3.07 16 20 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 21 C -0.14 -3.68 9.57 71.98 0.69 -2.99 16 22 C 0.04 1.49 4.28 86.31 0.37 1.86 16 23 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 2.01 7.69 -2.39 -0.02 1.99 16 26 H 0.04 1.82 6.23 -2.39 -0.01 1.80 16 27 H 0.04 1.87 5.70 -2.39 -0.01 1.86 16 28 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 29 H 0.08 2.98 8.13 -2.39 -0.02 2.96 16 30 H 0.01 0.36 6.98 -2.39 -0.02 0.34 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.00 0.15 6.38 -2.38 -0.02 0.13 16 38 H 0.08 3.09 6.16 -2.38 -0.01 3.08 16 Total: -1.00 -65.81 288.57 1.83 -63.98 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.89 Total: 14.13 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 3.90 Total: -31.11 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -3.27 Total: -82.98 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -1.51 Total: -15.62 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 1.82 Total: 51.60 kcal Total: -65.81 1.83 -63.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677372.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.138 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds