Wall clock time and date at job start Sun Mar 29 2020 21:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 H 1.09002 * 109.47047 * 181.82284 * 3 2 1 5 5 C 1.50700 * 109.47429 * 61.82258 * 3 2 1 6 6 H 1.07996 * 119.99598 * 240.27935 * 5 3 2 7 7 C 1.37878 * 120.00003 * 59.99616 * 5 3 2 8 8 N 1.31512 * 119.99986 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46674 * 60.00172 * 9 7 5 11 11 H 1.48492 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47062 * 300.00400 * 9 7 5 13 13 N 1.46898 * 109.47193 * 301.81831 * 3 2 1 14 14 C 1.47010 * 111.00218 * 178.04600 * 13 3 2 15 15 C 1.53099 * 109.25986 * 182.39596 * 14 13 3 16 16 H 1.08994 * 109.50737 * 63.08524 * 15 14 13 17 17 C 1.53001 * 109.50683 * 183.21893 * 15 14 13 18 18 O 1.43025 * 109.25521 * 303.15122 * 15 14 13 19 19 C 1.43013 * 113.73820 * 58.66921 * 18 15 14 20 20 H 1.09010 * 109.50418 * 61.26334 * 19 18 15 21 21 C 1.52996 * 109.50602 * 181.34932 * 19 18 15 22 22 C 1.47009 * 111.00021 * 301.68706 * 13 3 2 23 23 H 1.09008 * 109.46935 * 63.83840 * 1 2 3 24 24 H 1.08995 * 109.47039 * 183.83385 * 1 2 3 25 25 H 1.08997 * 109.47421 * 303.83952 * 1 2 3 26 26 H 1.08997 * 109.47501 * 239.99500 * 2 1 3 27 27 H 1.09002 * 109.46993 * 119.99561 * 2 1 3 28 28 H 0.97003 * 120.00292 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.50252 * 302.33135 * 14 13 3 30 30 H 1.08998 * 109.50490 * 62.41365 * 14 13 3 31 31 H 1.08998 * 109.47166 * 59.99642 * 17 15 14 32 32 H 1.09001 * 109.46728 * 179.97438 * 17 15 14 33 33 H 1.08999 * 109.46444 * 299.99849 * 17 15 14 34 34 H 1.09001 * 109.47094 * 60.00096 * 21 19 18 35 35 H 1.08999 * 109.47247 * 180.02562 * 21 19 18 36 36 H 1.09007 * 109.47159 * 300.00158 * 21 19 18 37 37 H 1.09004 * 109.50439 * 297.53538 * 22 13 3 38 38 H 1.08996 * 109.51277 * 57.66976 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 -0.0327 5 6 1.5749 2.1398 1.2524 6 1 0.9477 3.0162 1.1813 7 6 1.9452 1.6556 2.4891 8 7 2.7048 0.5855 2.5757 9 14 1.3682 2.5195 4.0416 10 1 -0.1162 2.5187 4.0858 11 1 1.8987 1.8065 5.2311 12 1 1.8626 3.9197 4.0417 13 7 1.5147 2.1476 -1.1768 14 6 1.9472 3.5526 -1.1857 15 6 1.3302 4.2632 -2.3934 16 1 0.2443 4.2643 -2.2994 17 6 1.8402 5.7045 -2.4535 18 8 1.7055 3.5736 -3.5889 19 6 1.2995 2.2026 -3.6142 20 1 0.2125 2.1437 -3.5557 21 6 1.7771 1.5522 -4.9141 22 6 1.9160 1.4711 -2.4188 23 1 -0.3633 0.4531 -0.9225 24 1 -0.3633 -1.0253 0.0687 25 1 -0.3634 0.5722 0.8535 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9651 0.2445 3.4457 29 1 1.6174 4.0407 -0.2686 30 1 3.0342 3.5984 -1.2518 31 1 2.9259 5.7020 -2.5494 32 1 1.4009 6.2097 -3.3137 33 1 1.5572 6.2283 -1.5405 34 1 2.8641 1.6100 -4.9712 35 1 1.4670 0.5075 -4.9330 36 1 1.3402 2.0760 -5.7643 37 1 3.0025 1.4837 -2.5055 38 1 1.5635 0.4399 -2.4019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:09 Heat of formation + Delta-G solvation = -52.282406 kcal Electronic energy + Delta-G solvation = -17157.116627 eV Core-core repulsion = 14613.280285 eV Total energy + Delta-G solvation = -2543.836342 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24419 -36.05553 -33.32954 -32.74752 -30.94673 -29.63514 -26.97837 -25.85590 -24.13340 -22.52756 -21.46138 -19.95406 -18.93361 -16.23480 -15.98402 -15.73077 -14.64258 -14.51348 -14.28165 -13.66281 -13.31221 -12.84449 -12.43166 -12.34271 -12.14435 -11.90328 -11.76382 -11.73636 -11.28880 -10.92457 -10.91942 -10.75486 -10.53896 -10.47324 -10.12137 -9.85813 -9.77750 -9.49438 -8.87596 -8.78141 -8.41449 -7.19640 -6.01883 -4.05987 3.30380 3.35304 3.37636 4.05676 4.38472 4.83473 5.21440 5.30897 5.41811 5.47581 5.56262 5.64443 5.80585 5.83872 5.93796 6.01365 6.13162 6.18739 6.25491 6.36251 6.45056 6.51023 6.57373 6.61301 6.70513 6.77714 7.10336 7.28186 7.39664 7.62056 7.68443 7.73137 7.81217 8.13953 8.31643 8.56819 8.98537 9.57927 11.04505 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.009108 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.527086 B = 3073.568537 C = 3721.251654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.217 3.783 4 H -0.003 1.003 5 C -0.498 4.498 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.529 5.529 14 C 0.036 3.964 15 C 0.088 3.912 16 H 0.060 0.940 17 C -0.140 4.140 18 O -0.389 6.389 19 C 0.090 3.910 20 H 0.060 0.940 21 C -0.141 4.141 22 C 0.022 3.978 23 H 0.039 0.961 24 H 0.016 0.984 25 H 0.059 0.941 26 H 0.013 0.987 27 H 0.093 0.907 28 H 0.261 0.739 29 H 0.092 0.908 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 3.398 -9.463 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C 0.111 3.889 4 H 0.014 0.986 5 C -0.537 4.537 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.254 5.254 14 C -0.092 4.092 15 C 0.030 3.970 16 H 0.078 0.922 17 C -0.198 4.198 18 O -0.309 6.309 19 C 0.033 3.967 20 H 0.078 0.922 21 C -0.199 4.199 22 C -0.106 4.106 23 H 0.058 0.942 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.609 3.346 -9.424 10.335 hybrid contribution 0.536 0.206 1.135 1.272 sum -2.073 3.552 -8.288 9.253 Atomic orbital electron populations 1.21464 0.97259 0.97599 1.01468 1.21575 0.95168 0.98135 1.00133 1.19277 0.92513 0.90833 0.86230 0.98553 1.21008 1.30961 1.12084 0.89642 0.92064 1.24903 0.95182 0.95068 0.98934 1.69865 1.36293 1.22539 1.24417 0.86626 0.79087 0.79580 0.82518 1.20232 1.21375 1.20376 1.62339 1.59771 1.01138 1.02134 1.22616 0.97264 0.91080 0.98281 1.22207 0.98431 0.91670 0.84712 0.92243 1.21714 1.01849 0.94307 1.01945 1.87866 1.80591 1.22946 1.39535 1.22110 0.98179 0.81753 0.94699 0.92239 1.21725 1.01980 1.00001 0.96180 1.22753 0.97595 0.99165 0.91135 0.94195 0.96511 0.92211 0.96833 0.88894 0.92923 0.88952 0.95481 0.92211 0.92386 0.91080 0.92197 0.91249 0.92237 0.95468 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.52 37.16 0.35 -2.29 16 2 C -0.11 -2.67 5.03 -26.73 -0.13 -2.80 16 3 C 0.22 5.42 1.75 -68.86 -0.12 5.30 16 4 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 5 C -0.50 -13.25 6.66 -34.44 -0.23 -13.48 16 6 H 0.06 1.63 6.55 -52.49 -0.34 1.28 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.08 11.31 55.43 0.63 -24.45 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.53 -11.41 3.82 -227.72 -0.87 -12.28 16 14 C 0.04 0.73 4.66 -3.71 -0.02 0.71 16 15 C 0.09 1.49 3.43 -26.68 -0.09 1.40 16 16 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 17 C -0.14 -1.96 9.57 37.16 0.36 -1.60 16 18 O -0.39 -6.87 10.11 -35.23 -0.36 -7.23 16 19 C 0.09 1.49 3.42 -26.68 -0.09 1.40 16 20 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 21 C -0.14 -1.85 9.57 37.16 0.36 -1.50 16 22 C 0.02 0.42 4.58 -3.71 -0.02 0.41 16 23 H 0.04 0.83 7.68 -51.92 -0.40 0.43 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 1.42 7.15 -51.93 -0.37 1.05 16 26 H 0.01 0.29 6.43 -51.93 -0.33 -0.04 16 27 H 0.09 2.47 6.02 -51.93 -0.31 2.16 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.09 1.95 6.28 -51.93 -0.33 1.62 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.52 6.19 -51.93 -0.32 1.19 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -27.98 291.91 -7.57 -35.55 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.62 Total: -1.10 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 0.27 Total: -10.91 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.24 Total: -36.74 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.36 Total: -7.23 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.98 -7.57 -35.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.737 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds