Wall clock time and date at job start Sun Mar 29 2020 21:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46999 * 2 1 4 4 H 1.09002 * 109.47047 * 181.82284 * 3 2 1 5 5 C 1.50700 * 109.47429 * 61.82258 * 3 2 1 6 6 H 1.07996 * 119.99598 * 240.27935 * 5 3 2 7 7 C 1.37878 * 120.00003 * 59.99616 * 5 3 2 8 8 N 1.31512 * 119.99986 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00057 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46674 * 60.00172 * 9 7 5 11 11 H 1.48492 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47062 * 300.00400 * 9 7 5 13 13 N 1.46898 * 109.47193 * 301.81831 * 3 2 1 14 14 C 1.47010 * 111.00218 * 178.04600 * 13 3 2 15 15 C 1.53099 * 109.25986 * 182.39596 * 14 13 3 16 16 H 1.08994 * 109.50737 * 63.08524 * 15 14 13 17 17 C 1.53001 * 109.50683 * 183.21893 * 15 14 13 18 18 O 1.43025 * 109.25521 * 303.15122 * 15 14 13 19 19 C 1.43013 * 113.73820 * 58.66921 * 18 15 14 20 20 H 1.09010 * 109.50418 * 61.26334 * 19 18 15 21 21 C 1.52996 * 109.50602 * 181.34932 * 19 18 15 22 22 C 1.47009 * 111.00021 * 301.68706 * 13 3 2 23 23 H 1.09008 * 109.46935 * 63.83840 * 1 2 3 24 24 H 1.08995 * 109.47039 * 183.83385 * 1 2 3 25 25 H 1.08997 * 109.47421 * 303.83952 * 1 2 3 26 26 H 1.08997 * 109.47501 * 239.99500 * 2 1 3 27 27 H 1.09002 * 109.46993 * 119.99561 * 2 1 3 28 28 H 0.97003 * 120.00292 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.50252 * 302.33135 * 14 13 3 30 30 H 1.08998 * 109.50490 * 62.41365 * 14 13 3 31 31 H 1.08998 * 109.47166 * 59.99642 * 17 15 14 32 32 H 1.09001 * 109.46728 * 179.97438 * 17 15 14 33 33 H 1.08999 * 109.46444 * 299.99849 * 17 15 14 34 34 H 1.09001 * 109.47094 * 60.00096 * 21 19 18 35 35 H 1.08999 * 109.47247 * 180.02562 * 21 19 18 36 36 H 1.09007 * 109.47159 * 300.00158 * 21 19 18 37 37 H 1.09004 * 109.50439 * 297.53538 * 22 13 3 38 38 H 1.08996 * 109.51277 * 57.66976 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 -0.0327 5 6 1.5749 2.1398 1.2524 6 1 0.9477 3.0162 1.1813 7 6 1.9452 1.6556 2.4891 8 7 2.7048 0.5855 2.5757 9 14 1.3682 2.5195 4.0416 10 1 -0.1162 2.5187 4.0858 11 1 1.8987 1.8065 5.2311 12 1 1.8626 3.9197 4.0417 13 7 1.5147 2.1476 -1.1768 14 6 1.9472 3.5526 -1.1857 15 6 1.3302 4.2632 -2.3934 16 1 0.2443 4.2643 -2.2994 17 6 1.8402 5.7045 -2.4535 18 8 1.7055 3.5736 -3.5889 19 6 1.2995 2.2026 -3.6142 20 1 0.2125 2.1437 -3.5557 21 6 1.7771 1.5522 -4.9141 22 6 1.9160 1.4711 -2.4188 23 1 -0.3633 0.4531 -0.9225 24 1 -0.3633 -1.0253 0.0687 25 1 -0.3634 0.5722 0.8535 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9651 0.2445 3.4457 29 1 1.6174 4.0407 -0.2686 30 1 3.0342 3.5984 -1.2518 31 1 2.9259 5.7020 -2.5494 32 1 1.4009 6.2097 -3.3137 33 1 1.5572 6.2283 -1.5405 34 1 2.8641 1.6100 -4.9712 35 1 1.4670 0.5075 -4.9330 36 1 1.3402 2.0760 -5.7643 37 1 3.0025 1.4837 -2.5055 38 1 1.5635 0.4399 -2.4019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:09 Heat of formation + Delta-G solvation = -69.498674 kcal Electronic energy + Delta-G solvation = -17157.863180 eV Core-core repulsion = 14613.280285 eV Total energy + Delta-G solvation = -2544.582895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75450 -37.79158 -34.67440 -34.61454 -32.80948 -30.94898 -28.78510 -27.38745 -25.92692 -24.22066 -22.81245 -21.47802 -20.79310 -18.19069 -17.48854 -17.36134 -16.36539 -16.16548 -15.87459 -15.16480 -14.99560 -14.57927 -14.04943 -13.78121 -13.65350 -13.34988 -13.05720 -12.88595 -12.82105 -12.73805 -12.67376 -12.37580 -12.30931 -12.01436 -11.87397 -11.73896 -11.41946 -11.21982 -10.79343 -10.48358 -10.34315 -9.01562 -8.09890 -6.20657 1.42027 1.43212 1.50443 2.41525 2.76326 3.15010 3.24731 3.88169 4.13126 4.14589 4.20624 4.23125 4.48534 4.54978 4.61240 4.70325 4.71933 4.74962 4.77621 4.87306 4.94184 5.02757 5.06697 5.19411 5.23742 5.25007 5.32317 5.41064 5.46308 5.70014 5.74127 5.84457 6.25124 6.31192 6.35099 6.67061 6.90562 7.46960 8.95668 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029763 B = 0.009108 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.527086 B = 3073.568537 C = 3721.251654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.108 4.108 3 C 0.223 3.777 4 H -0.050 1.050 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.530 5.530 14 C 0.037 3.963 15 C 0.092 3.908 16 H 0.064 0.936 17 C -0.135 4.135 18 O -0.395 6.395 19 C 0.091 3.909 20 H 0.066 0.934 21 C -0.135 4.135 22 C 0.023 3.977 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.260 0.740 29 H 0.079 0.921 30 H 0.007 0.993 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.011 0.989 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 4.072 -10.572 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.146 4.146 3 C 0.116 3.884 4 H -0.032 1.032 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.255 5.255 14 C -0.091 4.091 15 C 0.034 3.966 16 H 0.082 0.918 17 C -0.192 4.192 18 O -0.315 6.315 19 C 0.033 3.967 20 H 0.084 0.916 21 C -0.192 4.192 22 C -0.106 4.106 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.029 0.971 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.935 4.031 -10.552 11.962 hybrid contribution 0.982 -0.024 1.448 1.750 sum -2.952 4.008 -9.104 10.376 Atomic orbital electron populations 1.21312 0.95402 0.98739 1.00990 1.21447 0.96668 0.97116 0.99371 1.19079 0.89779 0.92031 0.87511 1.03219 1.21214 1.30690 1.12021 0.90569 0.92355 1.25646 0.95307 0.95689 1.01844 1.70007 1.37282 1.23751 1.24927 0.85664 0.78800 0.78637 0.78887 1.19558 1.21199 1.19770 1.62319 1.59276 1.01778 1.02107 1.22647 0.96253 0.90630 0.99596 1.22238 0.98440 0.92833 0.83044 0.91772 1.21712 1.01637 0.92343 1.03557 1.87884 1.80773 1.23480 1.39380 1.22251 0.98348 0.81130 0.94958 0.91628 1.21725 1.01787 1.01020 0.94699 1.22859 0.96871 0.99760 0.91111 0.92977 0.94278 0.94463 0.95377 0.91839 0.93040 0.90308 0.97469 0.92614 0.90328 0.89841 0.92608 0.89346 0.90510 0.97096 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.59 9.52 71.98 0.69 -3.91 16 2 C -0.11 -5.18 5.03 30.59 0.15 -5.03 16 3 C 0.22 11.42 1.75 44.17 0.08 11.50 16 4 H -0.05 -2.94 8.14 -2.39 -0.02 -2.96 16 5 C -0.51 -27.45 6.66 25.60 0.17 -27.28 16 6 H 0.06 3.13 6.55 -2.91 -0.02 3.12 16 7 C 0.01 0.75 5.30 84.66 0.45 1.20 16 8 N -0.92 -52.96 11.31 21.45 0.24 -52.72 16 9 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 N -0.53 -23.02 3.82 -874.38 -3.34 -26.36 16 14 C 0.04 1.52 4.66 86.32 0.40 1.92 16 15 C 0.09 3.02 3.43 30.63 0.10 3.12 16 16 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 17 C -0.14 -3.49 9.57 71.98 0.69 -2.80 16 18 O -0.40 -13.22 10.11 -148.98 -1.51 -14.72 16 19 C 0.09 2.81 3.42 30.63 0.10 2.92 16 20 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 21 C -0.13 -3.16 9.57 71.98 0.69 -2.47 16 22 C 0.02 0.84 4.58 86.32 0.40 1.24 16 23 H 0.05 2.07 7.68 -2.38 -0.02 2.06 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.74 7.15 -2.39 -0.02 1.72 16 26 H 0.03 1.23 6.43 -2.39 -0.02 1.22 16 27 H 0.06 3.46 6.02 -2.39 -0.01 3.44 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.08 3.37 6.28 -2.39 -0.01 3.36 16 30 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.09 3.11 6.19 -2.39 -0.01 3.09 16 Total: -1.00 -60.58 291.91 2.35 -58.23 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.00 Total: 9.71 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.92 Total: -19.59 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -3.10 Total: -79.07 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.51 Total: -14.72 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -60.58 2.35 -58.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.268 kcal (2) G-P(sol) polarization free energy of solvation -60.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds