Wall clock time and date at job start Sun Mar 29 2020 21:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47487 * 2 1 4 4 H 1.09003 * 109.46685 * 305.00278 * 3 2 1 5 5 C 1.50690 * 109.47315 * 185.00403 * 3 2 1 6 6 H 1.08003 * 120.00309 * 240.00304 * 5 3 2 7 7 C 1.37881 * 120.00430 * 59.99711 * 5 3 2 8 8 N 1.31516 * 119.99533 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00153 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47189 * 90.00497 * 9 7 5 11 11 H 1.48503 * 109.46905 * 210.00149 * 9 7 5 12 12 H 1.48497 * 109.47241 * 330.00199 * 9 7 5 13 13 N 1.46894 * 109.47059 * 65.00154 * 3 2 1 14 14 C 1.47016 * 111.00272 * 180.02562 * 13 3 2 15 15 C 1.53096 * 109.25942 * 177.60825 * 14 13 3 16 16 H 1.09005 * 109.50418 * 176.82296 * 15 14 13 17 17 C 1.52996 * 109.50531 * 296.90727 * 15 14 13 18 18 O 1.43012 * 109.25705 * 56.84534 * 15 14 13 19 19 C 1.43012 * 113.74365 * 301.32719 * 18 15 14 20 20 H 1.09007 * 109.50262 * 298.74161 * 19 18 15 21 21 C 1.52999 * 109.51188 * 178.60745 * 19 18 15 22 22 C 1.47010 * 111.00052 * 56.36359 * 13 3 2 23 23 H 1.09004 * 109.46830 * 299.99500 * 1 2 3 24 24 H 1.08990 * 109.47399 * 59.99873 * 1 2 3 25 25 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47038 * 239.99744 * 2 1 3 27 27 H 1.09002 * 109.47383 * 120.00471 * 2 1 3 28 28 H 0.97004 * 119.99967 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.50851 * 57.66502 * 14 13 3 30 30 H 1.09004 * 109.50278 * 297.54265 * 14 13 3 31 31 H 1.09000 * 109.46887 * 60.00709 * 17 15 14 32 32 H 1.09001 * 109.47075 * 180.02562 * 17 15 14 33 33 H 1.08993 * 109.47311 * 300.00604 * 17 15 14 34 34 H 1.08998 * 109.46876 * 59.99683 * 21 19 18 35 35 H 1.08994 * 109.47058 * 180.02562 * 21 19 18 36 36 H 1.08996 * 109.46857 * 300.00293 * 21 19 18 37 37 H 1.09008 * 109.50529 * 62.46151 * 22 13 3 38 38 H 1.08992 * 109.54732 * 302.35060 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4061 0.3373 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5549 -0.3503 -0.7604 11 1 6.3828 0.9222 -2.8175 12 1 6.5570 2.0736 -0.6904 13 7 1.6516 2.0992 1.2552 14 6 2.1253 3.4905 1.2906 15 6 1.6487 4.1535 2.5856 16 1 2.0449 5.1674 2.6426 17 6 0.1196 4.2007 2.6025 18 8 2.1155 3.3939 3.7038 19 6 1.6723 2.0342 3.7017 20 1 0.5835 2.0063 3.7463 21 6 2.2530 1.3055 4.9152 22 6 2.1486 1.3494 2.4179 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8291 -0.0605 -2.9504 29 1 1.7244 4.0334 0.4347 30 1 3.2147 3.5050 1.2537 31 1 -0.2759 3.1865 2.5472 32 1 -0.2191 4.6733 3.5246 33 1 -0.2356 4.7764 1.7479 34 1 1.9163 1.7957 5.8287 35 1 1.9152 0.2693 4.9127 36 1 3.3416 1.3325 4.8685 37 1 3.2384 1.3294 2.3993 38 1 1.7653 0.3297 2.3853 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:11 Heat of formation + Delta-G solvation = -68.224270 kcal Electronic energy + Delta-G solvation = -17365.507597 eV Core-core repulsion = 14820.979964 eV Total energy + Delta-G solvation = -2544.527633 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89499 -37.77395 -34.51899 -34.23100 -32.98143 -30.89209 -28.58958 -27.59306 -25.92123 -24.25429 -23.20869 -21.14278 -20.33932 -18.41197 -17.46166 -17.21648 -16.48013 -15.97621 -15.55039 -15.38324 -15.10702 -14.67379 -13.81101 -13.70361 -13.47823 -13.28051 -13.17696 -13.02544 -12.80088 -12.74663 -12.55152 -12.48927 -12.23828 -12.12996 -11.81438 -11.61187 -11.41571 -11.08082 -10.95808 -10.44810 -10.29522 -8.97510 -8.06014 -6.28456 1.33038 1.35493 1.43984 2.37006 2.88767 3.11736 3.33671 4.00490 4.09615 4.22846 4.31361 4.35193 4.50687 4.56857 4.65417 4.71740 4.77837 4.82484 4.89789 4.95677 5.01723 5.11631 5.12486 5.22589 5.27443 5.30783 5.41182 5.46291 5.49687 5.59777 5.77559 6.01997 6.16528 6.34215 6.37544 6.58839 6.91219 7.41902 8.88467 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.009678 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.549842 B = 2892.382702 C = 3164.565305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.219 3.781 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.520 5.520 14 C 0.033 3.967 15 C 0.091 3.909 16 H 0.112 0.888 17 C -0.162 4.162 18 O -0.396 6.396 19 C 0.087 3.913 20 H 0.073 0.927 21 C -0.138 4.138 22 C 0.034 3.966 23 H 0.057 0.943 24 H 0.033 0.967 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.262 0.738 29 H 0.069 0.931 30 H 0.015 0.985 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.013 0.987 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 3.225 9.978 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.112 3.888 4 H 0.024 0.976 5 C -0.590 4.590 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.244 5.244 14 C -0.097 4.097 15 C 0.033 3.967 16 H 0.130 0.870 17 C -0.219 4.219 18 O -0.316 6.316 19 C 0.030 3.970 20 H 0.090 0.910 21 C -0.195 4.195 22 C -0.095 4.095 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.647 3.218 9.958 11.891 hybrid contribution 2.088 -0.221 -1.030 2.338 sum -3.560 2.997 8.928 10.068 Atomic orbital electron populations 1.21571 0.96016 0.99949 1.00766 1.21495 0.94706 0.97960 1.00552 1.19071 0.91644 0.91651 0.86462 0.97597 1.21918 0.94225 1.37748 1.05145 0.93958 1.25557 1.01590 0.94925 0.95536 1.69986 1.36127 1.38845 1.09732 0.85793 0.81738 0.78271 0.77247 1.20209 1.20607 1.20213 1.62657 1.57351 1.01424 1.02973 1.22568 0.97325 0.91243 0.98515 1.22362 0.95489 0.94725 0.84127 0.87010 1.22156 0.94445 1.02908 1.02387 1.87929 1.75157 1.22772 1.45733 1.22289 0.98749 0.81545 0.94449 0.90958 1.21733 1.01090 1.00444 0.96245 1.22660 0.97142 0.98560 0.91150 0.92368 0.94794 0.93389 0.91910 0.94704 0.92858 0.91219 0.96648 0.92142 0.91333 0.91196 0.90524 0.89551 0.93147 0.96882 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.80 71.98 0.71 -4.18 16 2 C -0.11 -5.10 4.94 30.59 0.15 -4.95 16 3 C 0.22 10.90 1.82 44.17 0.08 10.98 16 4 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 5 C -0.55 -30.19 7.10 25.60 0.18 -30.01 16 6 H 0.04 2.39 5.79 -2.91 -0.02 2.38 16 7 C 0.02 1.33 5.29 84.66 0.45 1.77 16 8 N -0.91 -51.69 11.29 21.45 0.24 -51.45 16 9 Si 0.94 44.13 29.54 68.60 2.03 46.16 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.52 -21.74 3.58 -874.40 -3.13 -24.87 16 14 C 0.03 1.29 4.72 86.31 0.41 1.70 16 15 C 0.09 2.87 3.92 30.63 0.12 2.99 16 16 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 17 C -0.16 -4.33 8.89 71.98 0.64 -3.69 16 18 O -0.40 -13.50 10.28 -148.98 -1.53 -15.03 16 19 C 0.09 2.76 3.03 30.63 0.09 2.85 16 20 H 0.07 2.14 6.49 -2.38 -0.02 2.12 16 21 C -0.14 -3.51 9.57 71.98 0.69 -2.82 16 22 C 0.03 1.31 4.24 86.32 0.37 1.67 16 23 H 0.06 2.11 7.75 -2.38 -0.02 2.09 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 3.35 5.95 -2.38 -0.01 3.34 16 27 H 0.03 1.59 6.02 -2.39 -0.01 1.58 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.02 0.70 6.56 -2.38 -0.02 0.68 16 31 H 0.06 1.77 6.12 -2.39 -0.01 1.76 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.01 0.58 6.78 -2.38 -0.02 0.57 16 38 H 0.08 3.03 6.01 -2.39 -0.01 3.02 16 Total: -1.00 -59.46 286.53 2.51 -56.95 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.02 Total: 11.93 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 3.88 Total: -23.68 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -2.88 Total: -76.32 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -1.53 Total: -15.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.46 2.51 -56.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.271 kcal (2) G-P(sol) polarization free energy of solvation -59.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds