Wall clock time and date at job start Sun Mar 29 2020 21:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47117 * 303.20844 * 3 2 1 5 5 C 1.50702 * 109.47524 * 183.20731 * 3 2 1 6 6 H 1.07993 * 120.00418 * 240.00503 * 5 3 2 7 7 C 1.37882 * 119.99616 * 60.00217 * 5 3 2 8 8 N 1.31510 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47281 * 119.99653 * 9 7 5 12 12 H 1.48495 * 109.47189 * 239.99830 * 9 7 5 13 13 N 1.46906 * 109.47116 * 63.20819 * 3 2 1 14 14 C 1.46851 * 110.99565 * 66.78806 * 13 3 2 15 15 C 1.53040 * 109.51934 * 185.83766 * 14 13 3 16 16 C 1.53109 * 109.28106 * 300.82625 * 15 14 13 17 17 C 1.53001 * 109.52243 * 177.56147 * 16 15 14 18 18 O 1.42902 * 109.47075 * 174.99910 * 17 16 15 19 19 C 1.53120 * 109.16367 * 57.65242 * 16 15 14 20 20 C 1.46838 * 111.00206 * 190.99976 * 13 3 2 21 21 H 1.09000 * 109.47096 * 304.77589 * 1 2 3 22 22 H 1.09002 * 109.47346 * 64.77595 * 1 2 3 23 23 H 1.08999 * 109.47168 * 184.77221 * 1 2 3 24 24 H 1.08998 * 109.47084 * 240.00325 * 2 1 3 25 25 H 1.09004 * 109.47382 * 120.00473 * 2 1 3 26 26 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.45828 * 65.82678 * 14 13 3 28 28 H 1.08998 * 109.46513 * 305.85368 * 14 13 3 29 29 H 1.09004 * 109.49893 * 60.76505 * 15 14 13 30 30 H 1.08999 * 109.50075 * 180.87759 * 15 14 13 31 31 H 1.09007 * 109.52457 * 297.74355 * 16 15 14 32 32 H 1.08995 * 109.46913 * 294.99318 * 17 16 15 33 33 H 1.08998 * 109.47440 * 54.99798 * 17 16 15 34 34 H 0.96699 * 114.00123 * 179.97438 * 18 17 16 35 35 H 1.09006 * 109.50301 * 182.40581 * 19 16 15 36 36 H 1.09002 * 109.49873 * 62.28961 * 19 16 15 37 37 H 1.09009 * 109.46398 * 294.18037 * 20 13 3 38 38 H 1.09001 * 109.46319 * 54.14646 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4433 -0.0795 6 1 4.1271 1.8959 0.7094 7 6 4.1785 0.8660 -1.1595 8 7 3.4695 0.3143 -2.1200 9 14 6.0439 0.8663 -1.2578 10 1 6.6025 1.5440 -0.0603 11 1 6.5371 -0.5333 -1.3102 12 1 6.4750 1.5892 -2.4812 13 7 1.6146 2.1123 1.2364 14 6 2.2763 1.5240 2.4079 15 6 1.7034 2.1446 3.6841 16 6 1.9277 3.6589 3.6546 17 6 1.3033 4.2926 4.8994 18 8 1.6130 5.6873 4.9302 19 6 1.2702 4.2401 2.3999 20 6 1.8557 3.5588 1.1610 21 1 -0.3633 0.5861 0.8441 22 1 -0.3634 0.4379 -0.9297 23 1 -0.3633 -1.0241 0.0855 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9152 -0.0921 -2.8797 27 1 3.3471 1.7211 2.3572 28 1 2.1054 0.4475 2.4192 29 1 0.6351 1.9360 3.7423 30 1 2.2057 1.7191 4.5529 31 1 2.9973 3.8685 3.6358 32 1 0.2217 4.1612 4.8702 33 1 1.7038 3.8117 5.7918 34 1 1.2478 6.1545 5.6940 35 1 1.4630 5.3118 2.3512 36 1 0.1951 4.0645 2.4380 37 1 2.9285 3.7464 1.1161 38 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036677433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:03 Heat of formation + Delta-G solvation = -66.489690 kcal Electronic energy + Delta-G solvation = -16888.363730 eV Core-core repulsion = 14343.911314 eV Total energy + Delta-G solvation = -2544.452416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74513 -36.74329 -34.51223 -31.99369 -30.92010 -30.01542 -27.21051 -25.39681 -22.95101 -22.46642 -21.33137 -19.42965 -18.90230 -17.23631 -16.22079 -15.36047 -14.85612 -14.42251 -14.07986 -13.77508 -13.30027 -13.00314 -12.80694 -12.51507 -12.12815 -11.77818 -11.48250 -11.15691 -11.09680 -10.84041 -10.68933 -10.47625 -10.36106 -10.19147 -10.02627 -9.83310 -9.63034 -9.53639 -9.21174 -9.00198 -8.33372 -7.03692 -5.95650 -4.08823 3.27093 3.35768 3.39378 4.31799 4.41951 5.01088 5.16088 5.23864 5.29103 5.36881 5.65548 5.71017 5.90205 5.98211 6.15245 6.23276 6.34394 6.38596 6.50049 6.53480 6.57259 6.64241 6.70919 6.79801 6.84998 6.98985 7.16978 7.23498 7.42626 7.65405 7.66333 7.80874 8.04636 8.21428 8.39473 8.54330 9.02413 9.58675 11.03332 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.008142 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.117690 B = 3438.140060 C = 4001.582332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.064 3.936 15 C -0.110 4.110 16 C -0.087 4.087 17 C 0.082 3.918 18 O -0.573 6.573 19 C -0.104 4.104 20 C 0.063 3.937 21 H 0.050 0.950 22 H 0.037 0.963 23 H 0.024 0.976 24 H 0.091 0.909 25 H 0.032 0.968 26 H 0.260 0.740 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.372 0.628 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 4.699 11.001 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.258 5.258 14 C -0.065 4.065 15 C -0.148 4.148 16 C -0.105 4.105 17 C 0.004 3.996 18 O -0.377 6.377 19 C -0.141 4.141 20 C -0.066 4.066 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.109 0.891 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.218 0.782 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.946 4.369 10.306 12.238 hybrid contribution 1.707 0.160 0.292 1.739 sum -3.239 4.529 10.597 11.971 Atomic orbital electron populations 1.21720 0.98918 0.98418 1.00592 1.21579 0.92178 0.99205 1.01832 1.19265 0.92739 0.91105 0.86269 0.94534 1.21808 0.92857 1.37305 1.06042 0.92486 1.24913 0.97842 0.95121 0.95599 1.69886 1.34782 1.38027 1.09783 0.86641 0.86376 0.77679 0.77925 1.19976 1.21014 1.21053 1.62386 1.57154 1.01924 1.04323 1.21855 0.96631 0.98741 0.89242 1.21631 1.01414 0.93471 0.98240 1.21186 1.00437 0.95179 0.93729 1.22308 0.98322 0.81037 0.97932 1.86526 1.79273 1.21818 1.50117 1.21574 0.99804 0.98800 0.93967 1.21847 0.98587 0.89791 0.96360 0.93070 0.94402 0.95714 0.89114 0.94958 0.93005 0.94464 0.91170 0.91782 0.92688 0.91136 0.93828 0.94218 0.78202 0.92121 0.92173 0.94897 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.49 16 2 C -0.11 -2.61 5.14 -26.73 -0.14 -2.75 16 3 C 0.21 5.27 1.72 -68.86 -0.12 5.15 16 4 H 0.04 1.01 7.97 -51.93 -0.41 0.60 16 5 C -0.54 -14.57 7.24 -34.44 -0.25 -14.81 16 6 H 0.06 1.56 5.84 -52.49 -0.31 1.25 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -25.07 11.30 55.43 0.63 -24.45 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.53 -11.31 3.89 -228.08 -0.89 -12.20 16 14 C 0.06 1.25 4.77 -3.83 -0.02 1.23 16 15 C -0.11 -1.71 5.38 -26.65 -0.14 -1.85 16 16 C -0.09 -1.33 2.49 -90.50 -0.23 -1.56 16 17 C 0.08 1.01 6.43 37.16 0.24 1.25 16 18 O -0.57 -7.17 13.26 -35.23 -0.47 -7.64 16 19 C -0.10 -1.72 5.25 -26.65 -0.14 -1.86 16 20 C 0.06 1.26 5.20 -3.84 -0.02 1.24 16 21 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 25 H 0.03 0.75 6.33 -51.93 -0.33 0.43 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.04 0.81 6.33 -51.93 -0.33 0.48 16 28 H 0.07 1.41 6.20 -51.93 -0.32 1.09 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.37 2.74 9.12 45.56 0.42 3.16 16 35 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.72 7.36 -51.92 -0.38 0.34 16 38 H 0.06 1.25 8.00 -51.93 -0.42 0.84 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -28.87 290.13 -7.63 -36.51 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.71 Total: 1.79 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.54 Total: -14.70 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.26 Total: -36.65 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.47 Total: -7.64 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.87 -7.63 -36.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.984 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds