Wall clock time and date at job start Sun Mar 29 2020 21:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47117 * 303.20844 * 3 2 1 5 5 C 1.50702 * 109.47524 * 183.20731 * 3 2 1 6 6 H 1.07993 * 120.00418 * 240.00503 * 5 3 2 7 7 C 1.37882 * 119.99616 * 60.00217 * 5 3 2 8 8 N 1.31510 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47281 * 119.99653 * 9 7 5 12 12 H 1.48495 * 109.47189 * 239.99830 * 9 7 5 13 13 N 1.46906 * 109.47116 * 63.20819 * 3 2 1 14 14 C 1.46851 * 110.99565 * 66.78806 * 13 3 2 15 15 C 1.53040 * 109.51934 * 185.83766 * 14 13 3 16 16 C 1.53109 * 109.28106 * 300.82625 * 15 14 13 17 17 C 1.53001 * 109.52243 * 177.56147 * 16 15 14 18 18 O 1.42902 * 109.47075 * 174.99910 * 17 16 15 19 19 C 1.53120 * 109.16367 * 57.65242 * 16 15 14 20 20 C 1.46838 * 111.00206 * 190.99976 * 13 3 2 21 21 H 1.09000 * 109.47096 * 304.77589 * 1 2 3 22 22 H 1.09002 * 109.47346 * 64.77595 * 1 2 3 23 23 H 1.08999 * 109.47168 * 184.77221 * 1 2 3 24 24 H 1.08998 * 109.47084 * 240.00325 * 2 1 3 25 25 H 1.09004 * 109.47382 * 120.00473 * 2 1 3 26 26 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.45828 * 65.82678 * 14 13 3 28 28 H 1.08998 * 109.46513 * 305.85368 * 14 13 3 29 29 H 1.09004 * 109.49893 * 60.76505 * 15 14 13 30 30 H 1.08999 * 109.50075 * 180.87759 * 15 14 13 31 31 H 1.09007 * 109.52457 * 297.74355 * 16 15 14 32 32 H 1.08995 * 109.46913 * 294.99318 * 17 16 15 33 33 H 1.08998 * 109.47440 * 54.99798 * 17 16 15 34 34 H 0.96699 * 114.00123 * 179.97438 * 18 17 16 35 35 H 1.09006 * 109.50301 * 182.40581 * 19 16 15 36 36 H 1.09002 * 109.49873 * 62.28961 * 19 16 15 37 37 H 1.09009 * 109.46398 * 294.18037 * 20 13 3 38 38 H 1.09001 * 109.46319 * 54.14646 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4433 -0.0795 6 1 4.1271 1.8959 0.7094 7 6 4.1785 0.8660 -1.1595 8 7 3.4695 0.3143 -2.1200 9 14 6.0439 0.8663 -1.2578 10 1 6.6025 1.5440 -0.0603 11 1 6.5371 -0.5333 -1.3102 12 1 6.4750 1.5892 -2.4812 13 7 1.6146 2.1123 1.2364 14 6 2.2763 1.5240 2.4079 15 6 1.7034 2.1446 3.6841 16 6 1.9277 3.6589 3.6546 17 6 1.3033 4.2926 4.8994 18 8 1.6130 5.6873 4.9302 19 6 1.2702 4.2401 2.3999 20 6 1.8557 3.5588 1.1610 21 1 -0.3633 0.5861 0.8441 22 1 -0.3634 0.4379 -0.9297 23 1 -0.3633 -1.0241 0.0855 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9152 -0.0921 -2.8797 27 1 3.3471 1.7211 2.3572 28 1 2.1054 0.4475 2.4192 29 1 0.6351 1.9360 3.7423 30 1 2.2057 1.7191 4.5529 31 1 2.9973 3.8685 3.6358 32 1 0.2217 4.1612 4.8702 33 1 1.7038 3.8117 5.7918 34 1 1.2478 6.1545 5.6940 35 1 1.4630 5.3118 2.3512 36 1 0.1951 4.0645 2.4380 37 1 2.9285 3.7464 1.1161 38 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036677433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:03 Heat of formation + Delta-G solvation = -86.560676 kcal Electronic energy + Delta-G solvation = -16889.234073 eV Core-core repulsion = 14343.911314 eV Total energy + Delta-G solvation = -2545.322759 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.24740 -37.94976 -36.07077 -33.91487 -32.57393 -31.51641 -28.90794 -27.01797 -24.74399 -23.94858 -22.79440 -21.04543 -20.57869 -18.45200 -17.93281 -17.17268 -16.24026 -15.91789 -15.66055 -15.19830 -14.97527 -14.63707 -14.39931 -13.99922 -13.60517 -13.38312 -13.18850 -12.90173 -12.79863 -12.60444 -12.39965 -12.13102 -11.96440 -11.74629 -11.54095 -11.48394 -11.20823 -10.98887 -10.83598 -10.72298 -10.43250 -8.89876 -8.03766 -6.26709 1.33251 1.36216 1.45917 2.38268 3.13475 3.39201 3.46787 3.90320 3.99489 4.25183 4.45893 4.52728 4.55569 4.64562 4.69036 4.76498 4.77941 4.84334 4.93420 5.02137 5.06647 5.09289 5.18962 5.26857 5.29933 5.36655 5.44882 5.53335 5.55646 5.66669 5.81211 6.09524 6.21818 6.40721 6.72266 6.96075 7.01269 7.44143 8.90818 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.008142 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.117690 B = 3438.140060 C = 4001.582332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.551 4.551 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.281 1.281 13 N -0.526 5.526 14 C 0.064 3.936 15 C -0.098 4.098 16 C -0.088 4.088 17 C 0.089 3.911 18 O -0.594 6.594 19 C -0.092 4.092 20 C 0.063 3.937 21 H 0.060 0.940 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.262 0.738 27 H 0.010 0.990 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.395 0.605 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.005 0.995 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 4.931 13.067 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.207 1.207 13 N -0.250 5.250 14 C -0.064 4.064 15 C -0.136 4.136 16 C -0.107 4.107 17 C 0.012 3.988 18 O -0.402 6.402 19 C -0.129 4.129 20 C -0.066 4.066 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.023 0.977 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.622 4.616 12.399 14.376 hybrid contribution 1.921 0.128 -0.362 1.959 sum -3.701 4.744 12.038 13.458 Atomic orbital electron populations 1.21577 0.96139 1.00029 1.00642 1.21412 0.94606 0.97934 1.00267 1.19061 0.91487 0.91699 0.86788 0.98190 1.22021 0.94190 1.37005 1.05798 0.93537 1.25604 1.01860 0.94988 0.95413 1.70005 1.36256 1.38574 1.10175 0.85711 0.81576 0.77837 0.77736 1.19986 1.20275 1.20701 1.62373 1.56773 1.02358 1.03503 1.21897 0.95225 0.98745 0.90558 1.21537 1.02175 0.93422 0.96467 1.21160 0.99402 0.95283 0.94840 1.22163 0.98953 0.81104 0.96610 1.86461 1.79874 1.21993 1.51920 1.21466 1.00184 0.98571 0.92727 1.21882 0.97066 0.89444 0.98175 0.92097 0.95042 0.93426 0.92134 0.94930 0.92910 0.97208 0.91798 0.90349 0.90191 0.93200 0.92192 0.92199 0.75502 0.91723 0.91017 0.97657 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.85 71.98 0.71 -4.37 16 2 C -0.10 -5.00 5.14 30.59 0.16 -4.85 16 3 C 0.22 11.08 1.72 44.17 0.08 11.16 16 4 H 0.00 0.01 7.97 -2.39 -0.02 -0.01 16 5 C -0.55 -30.61 7.24 25.60 0.19 -30.43 16 6 H 0.05 2.63 5.84 -2.91 -0.02 2.62 16 7 C 0.02 1.18 5.30 84.66 0.45 1.63 16 8 N -0.91 -52.79 11.30 21.45 0.24 -52.55 16 9 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.53 -22.49 3.89 -875.51 -3.41 -25.90 16 14 C 0.06 2.49 4.77 86.33 0.41 2.90 16 15 C -0.10 -2.82 5.38 30.64 0.16 -2.65 16 16 C -0.09 -2.52 2.49 -10.72 -0.03 -2.55 16 17 C 0.09 1.88 6.43 71.98 0.46 2.34 16 18 O -0.59 -12.99 13.26 -148.98 -1.98 -14.97 16 19 C -0.09 -2.92 5.25 30.65 0.16 -2.76 16 20 C 0.06 2.56 5.20 86.33 0.45 3.01 16 21 H 0.06 2.31 7.56 -2.39 -0.02 2.29 16 22 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 3.30 5.99 -2.39 -0.01 3.29 16 25 H 0.03 1.53 6.33 -2.39 -0.02 1.51 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.01 0.43 6.33 -2.39 -0.02 0.41 16 28 H 0.06 2.54 6.20 -2.39 -0.01 2.52 16 29 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.40 4.43 9.12 -74.06 -0.68 3.76 16 35 H 0.06 2.01 7.91 -2.38 -0.02 2.00 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.01 0.23 7.36 -2.38 -0.02 0.22 16 38 H 0.05 2.15 8.00 -2.39 -0.02 2.13 16 Total: -1.00 -63.22 290.13 0.44 -62.78 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.35 Total: 10.63 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 3.20 Total: -26.56 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -3.16 Total: -78.45 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.98 Total: -14.97 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.22 0.44 -62.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036677433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.780 kcal (2) G-P(sol) polarization free energy of solvation -63.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds