Wall clock time and date at job start Sun Mar 29 2020 21:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46775 * 2 1 4 4 H 1.08997 * 109.47829 * 55.07705 * 3 2 1 5 5 C 1.50703 * 109.47296 * 175.08113 * 3 2 1 6 6 H 1.07993 * 120.00260 * 119.99535 * 5 3 2 7 7 C 1.37878 * 119.99803 * 299.99789 * 5 3 2 8 8 N 1.31511 * 119.99763 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99955 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47102 * 89.99777 * 9 7 5 11 11 H 1.48500 * 109.47407 * 209.99781 * 9 7 5 12 12 H 1.48500 * 109.47296 * 330.00057 * 9 7 5 13 13 N 1.46904 * 109.47071 * 295.07737 * 3 2 1 14 14 C 1.46843 * 110.99985 * 294.29764 * 13 3 2 15 15 C 1.53042 * 109.52319 * 174.15995 * 14 13 3 16 16 C 1.53126 * 109.27817 * 59.17525 * 15 14 13 17 17 O 1.42901 * 109.52080 * 182.44135 * 16 15 14 18 18 C 1.42897 * 113.99862 * 210.00273 * 17 16 15 19 19 C 1.53110 * 109.16328 * 302.34740 * 16 15 14 20 20 C 1.46851 * 110.99965 * 170.08388 * 13 3 2 21 21 H 1.09001 * 109.47262 * 299.99827 * 1 2 3 22 22 H 1.08993 * 109.47229 * 60.00638 * 1 2 3 23 23 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47646 * 239.99890 * 2 1 3 25 25 H 1.09006 * 109.47156 * 119.99640 * 2 1 3 26 26 H 0.97005 * 119.99216 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.46616 * 54.14285 * 14 13 3 28 28 H 1.09003 * 109.46334 * 294.17420 * 14 13 3 29 29 H 1.09000 * 109.50147 * 299.23748 * 15 14 13 30 30 H 1.08995 * 109.50642 * 179.11981 * 15 14 13 31 31 H 1.09001 * 109.51698 * 62.25663 * 16 15 14 32 32 H 1.08998 * 109.47217 * 60.00096 * 18 17 16 33 33 H 1.09002 * 109.47148 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47233 * 300.00344 * 18 17 16 35 35 H 1.08996 * 109.50580 * 177.59540 * 19 16 15 36 36 H 1.09003 * 109.50805 * 297.71489 * 19 16 15 37 37 H 1.08998 * 109.46133 * 65.82522 * 20 13 3 38 38 H 1.09000 * 109.46380 * 305.85629 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9812 0.8425 5 6 3.5421 1.4444 0.1218 6 1 4.1463 1.8893 -0.6549 7 6 4.1449 0.8780 1.2249 8 7 5.4557 0.8792 1.3310 9 14 3.0997 0.1091 2.5687 10 1 2.8775 -1.3269 2.2623 11 1 3.7992 0.2344 3.8727 12 1 1.7916 0.8083 2.6395 13 7 1.6497 2.0998 -1.2545 14 6 2.3245 1.4832 -2.4037 15 6 1.7866 2.0931 -3.7002 16 6 2.0347 3.6041 -3.6891 17 8 1.4838 4.1872 -4.8718 18 6 2.1763 5.3534 -5.3216 19 6 1.3623 4.2148 -2.4566 20 6 1.9125 3.5434 -1.1961 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8935 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 5.8798 0.4804 2.1070 27 1 2.1366 0.4096 -2.4022 28 1 3.3972 1.6641 -2.3350 29 1 0.7165 1.9007 -3.7763 30 1 2.2988 1.6465 -4.5524 31 1 3.1069 3.7968 -3.6523 32 1 3.2129 5.0983 -5.5417 33 1 1.6973 5.7353 -6.2232 34 1 2.1472 6.1161 -4.5434 35 1 1.5714 5.2839 -2.4202 36 1 0.2855 4.0557 -2.5130 37 1 2.9871 3.7147 -1.1330 38 1 1.4253 3.9661 -0.3174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037266334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:16 Heat of formation + Delta-G solvation = -47.750318 kcal Electronic energy + Delta-G solvation = -16988.661896 eV Core-core repulsion = 14445.022081 eV Total energy + Delta-G solvation = -2543.639816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.05619 -37.17221 -34.13596 -31.98453 -30.65492 -30.11000 -27.18420 -26.26616 -23.26896 -22.72337 -22.05587 -19.92274 -19.09942 -16.68085 -16.43876 -15.66781 -14.93984 -14.80336 -14.26823 -14.19008 -13.51938 -12.97484 -12.77845 -12.74789 -12.40378 -12.02437 -11.83543 -11.53648 -11.46855 -11.01788 -10.87668 -10.80102 -10.55195 -10.34769 -10.10314 -9.99378 -9.61314 -9.52663 -9.25464 -9.13923 -8.58100 -7.16371 -6.13741 -4.14515 3.24847 3.35979 3.38139 3.94577 4.36003 4.86355 5.16420 5.16637 5.21830 5.40520 5.43230 5.55136 5.65943 5.78571 5.95593 6.02541 6.03556 6.06862 6.09677 6.22705 6.32970 6.35602 6.45162 6.53735 6.69462 6.71300 6.82541 6.84270 6.95336 7.10882 7.24545 7.42015 7.55361 8.09227 8.15788 8.43616 8.88099 9.49981 10.98967 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036903 B = 0.007960 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.557839 B = 3516.804017 C = 3872.989447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.181 3.819 4 H 0.038 0.962 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.526 5.526 14 C 0.062 3.938 15 C -0.111 4.111 16 C 0.089 3.911 17 O -0.390 6.390 18 C 0.032 3.968 19 C -0.133 4.133 20 C 0.064 3.936 21 H 0.041 0.959 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.404 4.498 -8.013 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.056 0.944 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.250 5.250 14 C -0.066 4.066 15 C -0.149 4.149 16 C 0.031 3.969 17 O -0.309 6.309 18 C -0.065 4.065 19 C -0.172 4.172 20 C -0.064 4.064 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.917 4.309 -8.051 12.086 hybrid contribution 0.844 -0.193 1.072 1.379 sum -7.073 4.116 -6.978 10.755 Atomic orbital electron populations 1.21735 0.97353 0.99346 1.01673 1.21921 0.94075 0.99272 1.00591 1.19710 0.94505 0.90621 0.87874 0.94410 1.21634 0.90643 1.38989 1.07117 0.90594 1.24988 0.94729 0.95319 0.97866 1.69918 1.08814 1.45062 1.29811 0.86845 0.80683 0.79863 0.80806 1.20506 1.22641 1.18861 1.62313 1.56922 1.01881 1.03880 1.21919 0.97240 0.98806 0.88683 1.21707 1.02421 0.92650 0.98105 1.22270 0.96390 0.94037 0.84155 1.87886 1.56084 1.42713 1.44202 1.22713 0.96482 0.88088 0.99178 1.22078 1.01625 0.98626 0.94830 1.21820 0.99201 0.89430 0.95973 0.94014 0.91859 0.94823 0.92244 0.93576 0.92667 0.90644 0.93637 0.91019 0.91953 0.92590 0.94341 0.90192 0.94294 0.92527 0.90931 0.94121 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.80 37.16 0.36 -2.25 16 2 C -0.12 -2.59 4.82 -26.73 -0.13 -2.72 16 3 C 0.18 4.14 1.30 -68.86 -0.09 4.05 16 4 H 0.04 0.92 7.05 -51.93 -0.37 0.55 16 5 C -0.55 -14.67 7.81 -34.44 -0.27 -14.94 16 6 H 0.08 2.22 6.09 -52.49 -0.32 1.91 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 9 Si 0.89 21.74 24.41 -169.99 -4.15 17.59 16 10 H -0.28 -6.67 6.83 56.52 0.39 -6.28 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 13 N -0.53 -10.53 4.05 -228.07 -0.92 -11.45 16 14 C 0.06 1.18 4.78 -3.83 -0.02 1.16 16 15 C -0.11 -1.79 5.75 -26.64 -0.15 -1.95 16 16 C 0.09 1.40 2.68 -26.61 -0.07 1.33 16 17 O -0.39 -5.88 10.35 -35.23 -0.36 -6.24 16 18 C 0.03 0.37 10.82 101.05 1.09 1.46 16 19 C -0.13 -2.11 5.72 -26.65 -0.15 -2.26 16 20 C 0.06 1.21 5.19 -3.83 -0.02 1.19 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 1.11 7.75 -51.93 -0.40 0.71 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.25 6.22 -51.93 -0.32 0.93 16 25 H 0.05 1.06 3.22 -51.93 -0.17 0.89 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.08 1.44 6.12 -51.93 -0.32 1.12 16 28 H 0.05 0.97 6.38 -51.93 -0.33 0.64 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 32 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.42 7.96 -51.93 -0.41 0.01 16 35 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.84 7.29 -51.93 -0.38 0.47 16 38 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 LS Contribution 284.44 15.07 4.29 4.29 Total: -1.00 -28.97 284.44 -6.31 -35.28 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.39 Total: -0.29 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 0.46 Total: -12.96 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.15 Total: -37.67 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.36 Total: -6.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.97 -6.31 -35.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037266334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.467 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds