Wall clock time and date at job start Sun Mar 29 2020 21:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46775 * 2 1 4 4 H 1.08997 * 109.47829 * 55.07705 * 3 2 1 5 5 C 1.50703 * 109.47296 * 175.08113 * 3 2 1 6 6 H 1.07993 * 120.00260 * 119.99535 * 5 3 2 7 7 C 1.37878 * 119.99803 * 299.99789 * 5 3 2 8 8 N 1.31511 * 119.99763 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99955 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47102 * 89.99777 * 9 7 5 11 11 H 1.48500 * 109.47407 * 209.99781 * 9 7 5 12 12 H 1.48500 * 109.47296 * 330.00057 * 9 7 5 13 13 N 1.46904 * 109.47071 * 295.07737 * 3 2 1 14 14 C 1.46843 * 110.99985 * 294.29764 * 13 3 2 15 15 C 1.53042 * 109.52319 * 174.15995 * 14 13 3 16 16 C 1.53126 * 109.27817 * 59.17525 * 15 14 13 17 17 O 1.42901 * 109.52080 * 182.44135 * 16 15 14 18 18 C 1.42897 * 113.99862 * 210.00273 * 17 16 15 19 19 C 1.53110 * 109.16328 * 302.34740 * 16 15 14 20 20 C 1.46851 * 110.99965 * 170.08388 * 13 3 2 21 21 H 1.09001 * 109.47262 * 299.99827 * 1 2 3 22 22 H 1.08993 * 109.47229 * 60.00638 * 1 2 3 23 23 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47646 * 239.99890 * 2 1 3 25 25 H 1.09006 * 109.47156 * 119.99640 * 2 1 3 26 26 H 0.97005 * 119.99216 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.46616 * 54.14285 * 14 13 3 28 28 H 1.09003 * 109.46334 * 294.17420 * 14 13 3 29 29 H 1.09000 * 109.50147 * 299.23748 * 15 14 13 30 30 H 1.08995 * 109.50642 * 179.11981 * 15 14 13 31 31 H 1.09001 * 109.51698 * 62.25663 * 16 15 14 32 32 H 1.08998 * 109.47217 * 60.00096 * 18 17 16 33 33 H 1.09002 * 109.47148 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.47233 * 300.00344 * 18 17 16 35 35 H 1.08996 * 109.50580 * 177.59540 * 19 16 15 36 36 H 1.09003 * 109.50805 * 297.71489 * 19 16 15 37 37 H 1.08998 * 109.46133 * 65.82522 * 20 13 3 38 38 H 1.09000 * 109.46380 * 305.85629 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9812 0.8425 5 6 3.5421 1.4444 0.1218 6 1 4.1463 1.8893 -0.6549 7 6 4.1449 0.8780 1.2249 8 7 5.4557 0.8792 1.3310 9 14 3.0997 0.1091 2.5687 10 1 2.8775 -1.3269 2.2623 11 1 3.7992 0.2344 3.8727 12 1 1.7916 0.8083 2.6395 13 7 1.6497 2.0998 -1.2545 14 6 2.3245 1.4832 -2.4037 15 6 1.7866 2.0931 -3.7002 16 6 2.0347 3.6041 -3.6891 17 8 1.4838 4.1872 -4.8718 18 6 2.1763 5.3534 -5.3216 19 6 1.3623 4.2148 -2.4566 20 6 1.9125 3.5434 -1.1961 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8935 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 5.8798 0.4804 2.1070 27 1 2.1366 0.4096 -2.4022 28 1 3.3972 1.6641 -2.3350 29 1 0.7165 1.9007 -3.7763 30 1 2.2988 1.6465 -4.5524 31 1 3.1069 3.7968 -3.6523 32 1 3.2129 5.0983 -5.5417 33 1 1.6973 5.7353 -6.2232 34 1 2.1472 6.1161 -4.5434 35 1 1.5714 5.2839 -2.4202 36 1 0.2855 4.0557 -2.5130 37 1 2.9871 3.7147 -1.1330 38 1 1.4253 3.9661 -0.3174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037266334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:15 Heat of formation + Delta-G solvation = -67.705999 kcal Electronic energy + Delta-G solvation = -16989.527240 eV Core-core repulsion = 14445.022081 eV Total energy + Delta-G solvation = -2544.505159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49395 -38.56216 -35.73992 -34.02772 -32.10907 -31.55791 -28.89547 -27.44937 -24.96443 -24.18476 -23.60415 -21.49164 -20.78208 -18.63868 -17.77315 -17.21408 -16.26461 -16.09837 -15.94637 -15.77135 -15.15226 -14.60768 -14.32151 -14.21100 -13.93003 -13.56458 -13.46054 -13.00867 -12.82405 -12.73427 -12.43907 -12.23653 -12.04646 -11.90756 -11.63913 -11.58620 -11.38515 -11.19225 -11.11983 -10.67512 -10.39113 -8.91982 -8.32071 -6.36163 1.30026 1.35394 1.45729 2.30402 2.81037 3.03575 3.27787 3.86450 3.89489 4.18858 4.29790 4.38516 4.47164 4.52821 4.55192 4.58022 4.64426 4.66660 4.70364 4.84948 4.89991 4.93320 5.02047 5.05047 5.11992 5.21764 5.26630 5.29513 5.36474 5.47995 5.55331 5.63346 6.15320 6.28733 6.38810 6.50990 6.72504 7.32385 8.84173 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036903 B = 0.007960 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.557839 B = 3516.804017 C = 3872.989447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.538 4.538 6 H 0.037 0.963 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.302 1.302 12 H -0.245 1.245 13 N -0.517 5.517 14 C 0.067 3.933 15 C -0.102 4.102 16 C 0.092 3.908 17 O -0.400 6.400 18 C 0.024 3.976 19 C -0.122 4.122 20 C 0.064 3.936 21 H 0.044 0.956 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.264 0.736 27 H 0.075 0.925 28 H 0.011 0.989 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.010 0.990 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 4.579 -8.622 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.075 3.925 4 H 0.049 0.951 5 C -0.577 4.577 6 H 0.055 0.945 7 C -0.182 4.182 8 N -0.588 5.588 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.169 1.169 13 N -0.240 5.240 14 C -0.062 4.062 15 C -0.140 4.140 16 C 0.034 3.966 17 O -0.319 6.319 18 C -0.072 4.072 19 C -0.160 4.160 20 C -0.065 4.065 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.028 0.972 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.434 4.404 -8.686 14.273 hybrid contribution 1.691 -0.129 1.153 2.051 sum -8.743 4.275 -7.532 12.307 Atomic orbital electron populations 1.21647 0.94266 1.01125 1.02151 1.21853 0.96777 0.97381 0.99940 1.19615 0.91518 0.92233 0.89157 0.95089 1.21901 0.92840 1.37323 1.05661 0.94483 1.25818 0.95713 0.96199 1.00460 1.70066 1.10822 1.47066 1.30881 0.85871 0.79623 0.79625 0.77433 1.19311 1.23046 1.16890 1.62371 1.56228 1.02461 1.02943 1.21878 0.95282 0.99101 0.89918 1.21599 1.02748 0.93105 0.96552 1.22124 0.95937 0.93772 0.84752 1.87857 1.56570 1.44015 1.43484 1.22961 0.96850 0.87052 1.00338 1.21972 1.01614 0.99343 0.93053 1.21868 0.97558 0.88988 0.98063 0.93695 0.91211 0.92436 0.92395 0.94802 0.92702 0.90700 0.97045 0.90192 0.90651 0.93446 0.93939 0.87828 0.93558 0.90671 0.90271 0.97158 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.80 71.98 0.71 -3.74 16 2 C -0.12 -5.02 4.82 30.59 0.15 -4.87 16 3 C 0.18 8.34 1.30 44.17 0.06 8.39 16 4 H 0.03 1.47 7.05 -2.39 -0.02 1.45 16 5 C -0.54 -29.84 7.81 25.60 0.20 -29.64 16 6 H 0.04 2.30 6.09 -2.91 -0.02 2.28 16 7 C 0.02 0.91 5.45 84.66 0.46 1.38 16 8 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 9 Si 0.95 44.80 24.41 68.60 1.67 46.47 16 10 H -0.27 -12.07 6.83 99.48 0.68 -11.40 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.25 -10.75 6.53 99.48 0.65 -10.10 16 13 N -0.52 -20.39 4.05 -875.48 -3.55 -23.94 16 14 C 0.07 2.53 4.78 86.33 0.41 2.95 16 15 C -0.10 -3.16 5.75 30.65 0.18 -2.98 16 16 C 0.09 2.75 2.68 30.67 0.08 2.84 16 17 O -0.40 -11.07 10.35 -148.98 -1.54 -12.61 16 18 C 0.02 0.49 10.82 113.37 1.23 1.72 16 19 C -0.12 -3.63 5.72 30.65 0.18 -3.45 16 20 C 0.06 2.38 5.19 86.33 0.45 2.82 16 21 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 2.21 7.75 -2.39 -0.02 2.19 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 2.37 6.22 -2.39 -0.01 2.36 16 25 H 0.03 1.48 3.22 -2.38 -0.01 1.47 16 26 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 27 H 0.07 2.82 6.12 -2.39 -0.01 2.81 16 28 H 0.01 0.51 6.38 -2.39 -0.02 0.49 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.50 7.79 -2.39 -0.02 1.48 16 32 H 0.04 0.83 8.09 -2.39 -0.02 0.82 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 0.88 7.96 -2.39 -0.02 0.86 16 35 H 0.07 1.97 7.96 -2.39 -0.02 1.95 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.01 0.44 7.29 -2.39 -0.02 0.42 16 38 H 0.07 2.54 8.02 -2.39 -0.02 2.52 16 Total: -1.00 -63.19 284.44 1.91 -61.29 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.93 Total: 12.05 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.09 Total: -24.59 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -3.25 Total: -82.61 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.54 Total: -12.61 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.67 Total: 46.47 kcal Total: -63.19 1.91 -61.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037266334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.420 kcal (2) G-P(sol) polarization free energy of solvation -63.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds