Wall clock time and date at job start Sun Mar 29 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47222 * 2 1 4 4 H 1.08997 * 109.47251 * 179.82574 * 3 2 1 5 5 C 1.50700 * 109.47111 * 299.83171 * 3 2 1 6 6 H 1.08001 * 120.00436 * 119.99645 * 5 3 2 7 7 C 1.37884 * 119.99474 * 299.99618 * 5 3 2 8 8 N 1.31510 * 120.00239 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99723 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47106 * 89.99824 * 9 7 5 11 11 H 1.48495 * 109.46887 * 210.00304 * 9 7 5 12 12 H 1.48500 * 109.47214 * 330.00145 * 9 7 5 13 13 N 1.46901 * 109.47059 * 59.82653 * 3 2 1 14 14 C 1.46902 * 111.00024 * 85.93626 * 13 3 2 15 15 C 1.52996 * 109.47156 * 175.52143 * 14 13 3 16 16 C 1.53001 * 109.47258 * 179.97438 * 15 14 13 17 17 H 1.09008 * 109.82272 * 305.57310 * 16 15 14 18 18 C 1.54377 * 109.83423 * 184.59007 * 16 15 14 19 19 C 1.55301 * 102.25597 * 219.13093 * 18 16 15 20 20 C 1.54945 * 100.94002 * 34.13298 * 19 18 16 21 21 O 1.43242 * 109.82713 * 66.45557 * 16 15 14 22 22 H 1.09006 * 109.47103 * 295.59029 * 1 2 3 23 23 H 1.09003 * 109.47219 * 55.58976 * 1 2 3 24 24 H 1.08994 * 109.47097 * 175.58965 * 1 2 3 25 25 H 1.08999 * 109.47265 * 119.99740 * 2 1 3 26 26 H 1.09000 * 109.47255 * 240.00200 * 2 1 3 27 27 H 0.97001 * 120.00061 * 179.97438 * 8 7 5 28 28 H 1.00905 * 110.99952 * 209.89002 * 13 3 2 29 29 H 1.08997 * 109.47147 * 295.52611 * 14 13 3 30 30 H 1.09006 * 109.46748 * 55.52467 * 14 13 3 31 31 H 1.08997 * 109.47475 * 300.00268 * 15 14 13 32 32 H 1.09006 * 109.47028 * 60.00495 * 15 14 13 33 33 H 1.09002 * 110.84966 * 337.32531 * 18 16 15 34 34 H 1.09000 * 110.84683 * 100.93995 * 18 16 15 35 35 H 1.09005 * 111.12525 * 276.21819 * 19 18 16 36 36 H 1.08997 * 111.12348 * 152.04994 * 19 18 16 37 37 H 1.09001 * 110.31126 * 204.63892 * 20 19 18 38 38 H 1.09007 * 110.31276 * 82.47172 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5411 2.1517 -1.2325 6 1 0.9199 3.0299 -1.1361 7 6 1.8778 1.6794 -2.4834 8 7 2.6338 0.6098 -2.6009 9 14 1.2600 2.5589 -4.0113 10 1 2.2397 3.5998 -4.4135 11 1 1.0979 1.5788 -5.1150 12 1 -0.0488 3.1972 -3.7199 13 7 1.5470 2.1362 1.1973 14 6 2.4393 1.9096 2.3420 15 6 1.9563 2.7348 3.5364 16 6 2.8854 2.4983 4.7288 17 1 2.9591 1.4303 4.9339 18 6 2.3413 3.2358 5.9711 19 6 3.6404 3.7742 6.6302 20 6 4.5027 4.0741 5.3783 21 8 4.1851 3.0294 4.4449 22 1 -0.3634 0.4439 0.9269 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3633 -1.0246 -0.0790 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.8704 0.2773 -3.4809 28 1 1.4286 3.1226 1.0208 29 1 2.4322 0.8518 2.6045 30 1 3.4529 2.2116 2.0779 31 1 1.9635 3.7927 3.2740 32 1 0.9428 2.4329 3.8006 33 1 1.6857 4.0562 5.6791 34 1 1.8259 2.5445 6.6378 35 1 4.1076 3.0139 7.2561 36 1 3.4446 4.6830 7.1992 37 1 5.5622 4.0448 5.6328 38 1 4.2397 5.0465 4.9617 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038096851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:33 Heat of formation + Delta-G solvation = -66.086957 kcal Electronic energy + Delta-G solvation = -16145.216640 eV Core-core repulsion = 13600.781688 eV Total energy + Delta-G solvation = -2544.434952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47032 -36.31086 -33.45757 -32.16584 -31.40941 -30.00627 -27.23924 -25.42873 -23.12079 -22.50786 -21.44145 -20.49558 -18.88690 -16.92697 -16.26787 -15.98662 -14.94469 -14.44770 -14.26740 -13.74100 -13.43835 -13.40817 -12.92652 -12.51412 -11.98762 -11.83123 -11.78385 -11.55097 -11.27930 -10.95610 -10.91596 -10.85065 -10.62705 -10.44665 -10.29777 -9.88299 -9.59343 -9.41680 -9.25464 -8.69196 -8.39977 -7.11045 -5.95537 -4.00830 3.32870 3.39572 3.43098 3.86964 4.42563 4.44819 4.69156 4.79794 5.10099 5.17179 5.34813 5.41721 5.50044 5.59027 5.62109 5.68789 5.82977 5.89650 6.02644 6.11557 6.28290 6.60122 6.65421 6.71996 6.75908 6.92965 7.13743 7.30544 7.42714 7.57696 7.81646 7.86237 7.93851 8.35468 8.49504 8.77879 9.09673 9.63590 11.10422 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041818 B = 0.005308 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.404976 B = 5274.237407 C = 5532.032226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.688 5.688 14 C 0.064 3.936 15 C -0.125 4.125 16 C 0.081 3.919 17 H 0.079 0.921 18 C -0.151 4.151 19 C -0.157 4.157 20 C 0.049 3.951 21 O -0.374 6.374 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.086 0.914 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 4.751 15.675 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.107 3.893 4 H 0.017 0.983 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.319 5.319 14 C -0.066 4.066 15 C -0.163 4.163 16 C 0.023 3.977 17 H 0.097 0.903 18 C -0.188 4.188 19 C -0.195 4.195 20 C -0.028 4.028 21 O -0.294 6.294 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.027 0.973 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.265 4.041 15.525 16.044 hybrid contribution 0.353 1.040 -0.937 1.443 sum 0.618 5.081 14.588 15.460 Atomic orbital electron populations 1.21445 0.97600 0.97303 1.01271 1.21425 0.94939 0.98381 0.99355 1.19132 0.92953 0.91449 0.85772 0.98258 1.21211 1.31457 1.11859 0.90436 0.92391 1.24894 0.95116 0.95016 0.98887 1.69891 1.36801 1.22736 1.23384 0.86586 0.79203 0.79338 0.82807 1.20855 1.21264 1.19892 1.60742 1.49169 1.15558 1.06396 1.21825 0.94705 0.98776 0.91248 1.21978 0.98572 1.00775 0.94963 1.22804 0.83155 0.97838 0.93919 0.90325 1.23187 0.97869 1.00822 0.96954 1.23263 0.96199 1.01814 0.98226 1.23342 0.99464 0.91644 0.88319 1.88506 1.33932 1.52280 1.54678 0.94026 0.92540 0.96860 0.97254 0.89607 0.93023 0.85585 0.92345 0.95658 0.92066 0.90608 0.90350 0.90175 0.90564 0.90232 0.90102 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.52 37.16 0.35 -2.40 16 2 C -0.10 -2.59 5.59 -26.73 -0.15 -2.74 16 3 C 0.21 5.57 2.30 -68.86 -0.16 5.41 16 4 H 0.00 -0.01 7.71 -51.93 -0.40 -0.41 16 5 C -0.51 -14.10 7.26 -34.44 -0.25 -14.35 16 6 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.69 -15.13 5.65 -107.95 -0.61 -15.74 16 14 C 0.06 1.24 5.45 -3.82 -0.02 1.22 16 15 C -0.12 -1.88 5.00 -26.73 -0.13 -2.02 16 16 C 0.08 1.07 3.52 -26.01 -0.09 0.98 16 17 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 18 C -0.15 -1.49 6.54 -24.79 -0.16 -1.66 16 19 C -0.16 -1.39 7.16 -24.48 -0.18 -1.56 16 20 C 0.05 0.54 7.78 38.18 0.30 0.84 16 21 O -0.37 -5.62 10.64 -35.23 -0.37 -6.00 16 22 H 0.04 0.91 7.74 -51.93 -0.40 0.51 16 23 H 0.06 1.40 7.07 -51.93 -0.37 1.03 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.01 0.21 7.61 -51.93 -0.39 -0.18 16 26 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.33 7.08 8.14 -39.29 -0.32 6.76 16 29 H 0.06 1.15 7.61 -51.93 -0.40 0.75 16 30 H 0.03 0.54 7.69 -51.93 -0.40 0.14 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 0.75 7.85 -51.93 -0.41 0.35 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -29.47 300.55 -8.17 -37.64 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.74 Total: 2.85 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.59 Total: -14.63 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.02 Total: -40.89 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.37 Total: -6.00 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.47 -8.17 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038096851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.444 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds