Wall clock time and date at job start Sun Mar 29 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47222 * 2 1 4 4 H 1.08997 * 109.47251 * 179.82574 * 3 2 1 5 5 C 1.50700 * 109.47111 * 299.83171 * 3 2 1 6 6 H 1.08001 * 120.00436 * 119.99645 * 5 3 2 7 7 C 1.37884 * 119.99474 * 299.99618 * 5 3 2 8 8 N 1.31510 * 120.00239 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99723 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47106 * 89.99824 * 9 7 5 11 11 H 1.48495 * 109.46887 * 210.00304 * 9 7 5 12 12 H 1.48500 * 109.47214 * 330.00145 * 9 7 5 13 13 N 1.46901 * 109.47059 * 59.82653 * 3 2 1 14 14 C 1.46902 * 111.00024 * 85.93626 * 13 3 2 15 15 C 1.52996 * 109.47156 * 175.52143 * 14 13 3 16 16 C 1.53001 * 109.47258 * 179.97438 * 15 14 13 17 17 H 1.09008 * 109.82272 * 305.57310 * 16 15 14 18 18 C 1.54377 * 109.83423 * 184.59007 * 16 15 14 19 19 C 1.55301 * 102.25597 * 219.13093 * 18 16 15 20 20 C 1.54945 * 100.94002 * 34.13298 * 19 18 16 21 21 O 1.43242 * 109.82713 * 66.45557 * 16 15 14 22 22 H 1.09006 * 109.47103 * 295.59029 * 1 2 3 23 23 H 1.09003 * 109.47219 * 55.58976 * 1 2 3 24 24 H 1.08994 * 109.47097 * 175.58965 * 1 2 3 25 25 H 1.08999 * 109.47265 * 119.99740 * 2 1 3 26 26 H 1.09000 * 109.47255 * 240.00200 * 2 1 3 27 27 H 0.97001 * 120.00061 * 179.97438 * 8 7 5 28 28 H 1.00905 * 110.99952 * 209.89002 * 13 3 2 29 29 H 1.08997 * 109.47147 * 295.52611 * 14 13 3 30 30 H 1.09006 * 109.46748 * 55.52467 * 14 13 3 31 31 H 1.08997 * 109.47475 * 300.00268 * 15 14 13 32 32 H 1.09006 * 109.47028 * 60.00495 * 15 14 13 33 33 H 1.09002 * 110.84966 * 337.32531 * 18 16 15 34 34 H 1.09000 * 110.84683 * 100.93995 * 18 16 15 35 35 H 1.09005 * 111.12525 * 276.21819 * 19 18 16 36 36 H 1.08997 * 111.12348 * 152.04994 * 19 18 16 37 37 H 1.09001 * 110.31126 * 204.63892 * 20 19 18 38 38 H 1.09007 * 110.31276 * 82.47172 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5411 2.1517 -1.2325 6 1 0.9199 3.0299 -1.1361 7 6 1.8778 1.6794 -2.4834 8 7 2.6338 0.6098 -2.6009 9 14 1.2600 2.5589 -4.0113 10 1 2.2397 3.5998 -4.4135 11 1 1.0979 1.5788 -5.1150 12 1 -0.0488 3.1972 -3.7199 13 7 1.5470 2.1362 1.1973 14 6 2.4393 1.9096 2.3420 15 6 1.9563 2.7348 3.5364 16 6 2.8854 2.4983 4.7288 17 1 2.9591 1.4303 4.9339 18 6 2.3413 3.2358 5.9711 19 6 3.6404 3.7742 6.6302 20 6 4.5027 4.0741 5.3783 21 8 4.1851 3.0294 4.4449 22 1 -0.3634 0.4439 0.9269 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3633 -1.0246 -0.0790 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.8704 0.2773 -3.4809 28 1 1.4286 3.1226 1.0208 29 1 2.4322 0.8518 2.6045 30 1 3.4529 2.2116 2.0779 31 1 1.9635 3.7927 3.2740 32 1 0.9428 2.4329 3.8006 33 1 1.6857 4.0562 5.6791 34 1 1.8259 2.5445 6.6378 35 1 4.1076 3.0139 7.2561 36 1 3.4446 4.6830 7.1992 37 1 5.5622 4.0448 5.6328 38 1 4.2397 5.0465 4.9617 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038096851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:33 Heat of formation + Delta-G solvation = -85.054667 kcal Electronic energy + Delta-G solvation = -16146.039141 eV Core-core repulsion = 13600.781688 eV Total energy + Delta-G solvation = -2545.257454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44794 -38.18011 -35.17675 -33.38267 -32.94785 -31.58767 -28.80841 -27.10679 -25.07519 -23.80484 -22.37208 -21.66206 -20.88765 -18.33626 -17.88227 -17.00568 -16.81630 -16.10886 -15.47927 -15.37035 -15.08143 -14.63848 -14.36006 -13.96895 -13.74905 -13.54135 -12.87285 -12.83065 -12.74127 -12.58476 -12.41129 -12.27222 -12.10110 -11.94954 -11.66616 -11.62269 -11.44398 -11.18970 -10.79031 -10.53448 -10.43552 -9.01519 -8.09406 -6.22621 1.42143 1.43131 1.53721 2.42816 2.97226 3.18723 3.54555 3.64315 3.98278 4.01337 4.21280 4.31861 4.42149 4.47657 4.59750 4.73307 4.78343 4.82507 4.84889 4.91557 4.93859 4.97539 5.02653 5.18848 5.22283 5.31260 5.36992 5.41947 5.56741 5.71076 5.82792 5.89484 6.18758 6.27608 6.49786 6.80096 7.03577 7.46278 8.96029 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041818 B = 0.005308 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.404976 B = 5274.237407 C = 5532.032226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.219 3.781 4 H -0.044 1.044 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.679 5.679 14 C 0.069 3.931 15 C -0.113 4.113 16 C 0.076 3.924 17 H 0.076 0.924 18 C -0.144 4.144 19 C -0.147 4.147 20 C 0.037 3.963 21 O -0.411 6.411 22 H 0.053 0.947 23 H 0.037 0.963 24 H 0.034 0.966 25 H 0.016 0.984 26 H 0.057 0.943 27 H 0.261 0.739 28 H 0.330 0.670 29 H 0.052 0.948 30 H -0.001 1.001 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 5.660 16.990 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C 0.110 3.890 4 H -0.027 1.027 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.784 3.216 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.190 1.190 13 N -0.309 5.309 14 C -0.061 4.061 15 C -0.151 4.151 16 C 0.018 3.982 17 H 0.094 0.906 18 C -0.182 4.182 19 C -0.185 4.185 20 C -0.039 4.039 21 O -0.331 6.331 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.071 0.929 30 H 0.017 0.983 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.980 4.963 16.864 17.606 hybrid contribution 0.809 0.748 -1.318 1.718 sum -0.171 5.710 15.546 16.562 Atomic orbital electron populations 1.21299 0.95591 0.98459 1.00978 1.21312 0.96606 0.97565 0.98309 1.18956 0.90329 0.92476 0.87216 1.02698 1.21463 1.31507 1.12029 0.91321 0.92309 1.25695 0.95192 0.95662 1.01921 1.70036 1.37717 1.24011 1.24056 0.85545 0.78895 0.78193 0.78938 1.20404 1.20931 1.18996 1.60700 1.49209 1.15393 1.05590 1.21834 0.93070 0.99285 0.91895 1.21887 0.99643 0.99705 0.93819 1.22859 0.82534 0.98327 0.94464 0.90580 1.23169 0.98469 1.01010 0.95512 1.23251 0.94883 1.03053 0.97272 1.23592 1.00688 0.90755 0.88887 1.88476 1.34771 1.53471 1.56381 0.92816 0.94411 0.94714 0.96497 0.92423 0.92999 0.85344 0.92922 0.98268 0.92095 0.89249 0.89788 0.88288 0.89795 0.87889 0.89144 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.52 71.98 0.69 -4.13 16 2 C -0.10 -5.08 5.59 30.60 0.17 -4.91 16 3 C 0.22 11.65 2.30 44.17 0.10 11.75 16 4 H -0.04 -2.71 7.71 -2.39 -0.02 -2.73 16 5 C -0.52 -29.28 7.26 25.60 0.19 -29.10 16 6 H 0.06 3.20 7.60 -2.91 -0.02 3.18 16 7 C 0.01 0.80 5.30 84.66 0.45 1.25 16 8 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 9 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.68 -30.04 5.65 -495.44 -2.80 -32.84 16 14 C 0.07 2.69 5.45 86.30 0.47 3.16 16 15 C -0.11 -3.29 5.00 30.59 0.15 -3.13 16 16 C 0.08 1.92 3.52 31.06 0.11 2.03 16 17 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 18 C -0.14 -2.45 6.54 31.85 0.21 -2.24 16 19 C -0.15 -2.17 7.16 32.05 0.23 -1.94 16 20 C 0.04 0.76 7.78 72.65 0.56 1.32 16 21 O -0.41 -12.23 10.64 -148.98 -1.58 -13.81 16 22 H 0.05 2.28 7.74 -2.38 -0.02 2.26 16 23 H 0.04 1.83 7.07 -2.39 -0.02 1.82 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.02 0.80 7.61 -2.39 -0.02 0.78 16 26 H 0.06 3.29 6.06 -2.39 -0.01 3.27 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.33 14.28 8.14 -89.69 -0.73 13.55 16 29 H 0.05 2.10 7.61 -2.39 -0.02 2.08 16 30 H 0.00 -0.04 7.69 -2.38 -0.02 -0.06 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.08 1.35 7.85 -2.39 -0.02 1.33 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -64.03 300.55 1.50 -62.53 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.28 Total: 17.89 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.33 Total: -25.93 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.56 Total: -86.90 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.58 Total: -13.81 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.03 1.50 -62.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038096851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.521 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds