Wall clock time and date at job start Sun Mar 29 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47304 * 2 1 4 4 H 1.08997 * 109.47015 * 305.66260 * 3 2 1 5 5 C 1.50696 * 109.47025 * 185.65933 * 3 2 1 6 6 H 1.07996 * 120.00010 * 239.99846 * 5 3 2 7 7 C 1.37881 * 119.99964 * 59.99903 * 5 3 2 8 8 N 1.31509 * 120.00067 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46966 * 89.99995 * 9 7 5 11 11 H 1.48492 * 109.47178 * 210.00506 * 9 7 5 12 12 H 1.48502 * 109.47054 * 330.00460 * 9 7 5 13 13 N 1.46900 * 109.47044 * 65.65781 * 3 2 1 14 14 C 1.46900 * 111.00049 * 205.58191 * 13 3 2 15 15 C 1.52999 * 109.46732 * 183.44374 * 14 13 3 16 16 C 1.53009 * 109.46733 * 179.97438 * 15 14 13 17 17 H 1.09005 * 110.41866 * 304.14410 * 16 15 14 18 18 C 1.54477 * 110.36904 * 181.83449 * 16 15 14 19 19 C 1.54516 * 104.06020 * 217.18777 * 18 16 15 20 20 C 1.54479 * 104.06246 * 0.02562 * 19 18 16 21 21 O 1.44424 * 104.80341 * 23.97602 * 20 19 18 22 22 H 1.09002 * 109.47056 * 175.51967 * 1 2 3 23 23 H 1.09005 * 109.46765 * 295.51434 * 1 2 3 24 24 H 1.08997 * 109.47421 * 55.50982 * 1 2 3 25 25 H 1.09002 * 109.46500 * 240.00456 * 2 1 3 26 26 H 1.08994 * 109.47286 * 120.00343 * 2 1 3 27 27 H 0.97005 * 120.00297 * 180.02562 * 8 7 5 28 28 H 1.00902 * 111.00153 * 329.53953 * 13 3 2 29 29 H 1.09000 * 109.47286 * 63.44298 * 14 13 3 30 30 H 1.09003 * 109.46758 * 303.44263 * 14 13 3 31 31 H 1.08999 * 109.47401 * 60.00710 * 15 14 13 32 32 H 1.08990 * 109.47479 * 299.99774 * 15 14 13 33 33 H 1.08997 * 110.51607 * 335.83535 * 18 16 15 34 34 H 1.08999 * 110.51160 * 98.41230 * 18 16 15 35 35 H 1.09003 * 110.50542 * 118.64889 * 19 18 16 36 36 H 1.09004 * 110.50900 * 241.21923 * 19 18 16 37 37 H 1.09005 * 110.36704 * 265.14672 * 20 19 18 38 38 H 1.08996 * 110.37139 * 142.80696 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 -0.8349 5 6 3.5405 1.4447 -0.1401 6 1 4.1542 1.8863 0.6311 7 6 4.1299 0.8830 -1.2529 8 7 3.3825 0.3457 -2.1922 9 14 5.9897 0.8864 -1.4269 10 1 6.5463 -0.3474 -0.8160 11 1 6.3521 0.9331 -2.8662 12 1 6.5493 2.0763 -0.7367 13 7 1.6651 2.0944 1.2619 14 6 1.5711 3.5508 1.0943 15 6 1.2638 4.2006 2.4450 16 6 1.1665 5.7177 2.2706 17 1 2.0798 6.1082 1.8216 18 6 0.9020 6.3994 3.6313 19 6 -0.0600 7.5593 3.2894 20 6 -0.2633 7.4405 1.7626 21 8 0.0210 6.0575 1.4589 22 1 -0.3633 -1.0245 -0.0803 23 1 -0.3633 0.4427 0.9275 24 1 -0.3634 0.5819 -0.8470 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.7971 -0.0498 -2.9749 28 1 0.8022 1.7154 1.6223 29 1 0.7738 3.7847 0.3888 30 1 2.5175 3.9345 0.7134 31 1 2.0612 3.9669 3.1504 32 1 0.3175 3.8169 2.8259 33 1 0.4288 5.7019 4.3225 34 1 1.8309 6.7828 4.0534 35 1 -1.0087 7.4350 3.8115 36 1 0.3922 8.5180 3.5435 37 1 0.4307 8.0952 1.2354 38 1 -1.2920 7.6837 1.4968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038096852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:35 Heat of formation + Delta-G solvation = -65.660133 kcal Electronic energy + Delta-G solvation = -16110.666668 eV Core-core repulsion = 13566.250224 eV Total energy + Delta-G solvation = -2544.416444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36081 -36.36643 -33.40242 -32.07672 -31.64863 -30.12140 -27.19902 -25.68979 -23.09529 -22.21995 -21.00141 -20.70561 -19.38603 -16.37465 -16.22931 -15.65337 -15.55411 -14.65929 -14.45129 -13.79225 -13.70250 -13.15219 -12.76176 -12.42252 -12.27474 -11.81791 -11.69694 -11.41936 -11.19934 -11.16936 -10.89916 -10.67959 -10.61688 -10.53009 -10.35540 -9.89383 -9.65871 -9.58811 -9.42892 -8.98780 -8.27723 -7.10955 -5.90107 -3.93926 3.36391 3.42370 3.46428 3.98626 4.49526 4.58188 4.68498 4.89778 5.04655 5.25009 5.37416 5.46582 5.53072 5.59491 5.69306 5.78010 5.90964 5.92381 6.03769 6.13712 6.23523 6.24859 6.32637 6.49027 6.68536 6.82273 6.92077 6.98360 7.16884 7.28193 7.59626 7.85639 7.99091 8.40953 8.48297 8.86564 9.14048 9.70599 11.15365 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.005961 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.727982 B = 4695.975974 C = 5251.300917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.689 5.689 14 C 0.070 3.930 15 C -0.108 4.108 16 C 0.075 3.925 17 H 0.069 0.931 18 C -0.151 4.151 19 C -0.155 4.155 20 C 0.043 3.957 21 O -0.368 6.368 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.099 0.901 26 H 0.040 0.960 27 H 0.259 0.741 28 H 0.315 0.685 29 H 0.021 0.979 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 10.991 9.083 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.320 5.320 14 C -0.060 4.060 15 C -0.146 4.146 16 C 0.017 3.983 17 H 0.087 0.913 18 C -0.189 4.189 19 C -0.193 4.193 20 C -0.035 4.035 21 O -0.287 6.287 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.117 0.883 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.771 10.775 8.979 15.167 hybrid contribution 0.252 0.240 -0.542 0.644 sum -5.519 11.015 8.438 14.932 Atomic orbital electron populations 1.21879 0.99621 0.99576 0.99637 1.21763 0.91233 1.00413 1.02967 1.19147 0.95399 0.89958 0.84489 0.98110 1.21222 0.91350 1.36256 1.04115 0.92146 1.24966 0.98032 0.95776 0.95873 1.69878 1.34591 1.39684 1.09584 0.86552 0.85910 0.78334 0.76896 1.20794 1.21466 1.20054 1.60709 1.36155 1.02347 1.32800 1.21743 1.00253 0.89841 0.94128 1.21663 1.02074 0.91268 0.99604 1.23091 0.89407 0.96514 0.89249 0.91274 1.22999 0.99822 0.97531 0.98512 1.22934 1.00281 0.99073 0.97026 1.23356 1.01237 0.84707 0.94163 1.89210 1.48529 1.25808 1.65123 0.94453 0.94598 0.93894 0.88313 0.94112 0.93157 0.86839 0.96117 0.91174 0.90125 0.91975 0.90587 0.90679 0.90958 0.90879 0.92543 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.67 37.16 0.36 -2.67 16 2 C -0.13 -3.05 5.36 -26.73 -0.14 -3.20 16 3 C 0.22 5.63 2.02 -68.87 -0.14 5.49 16 4 H 0.00 0.04 7.83 -51.93 -0.41 -0.37 16 5 C -0.49 -13.91 8.59 -34.44 -0.30 -14.20 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -26.12 11.29 55.43 0.63 -25.49 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.69 -15.29 6.28 -107.95 -0.68 -15.96 16 14 C 0.07 1.41 5.37 -3.82 -0.02 1.39 16 15 C -0.11 -1.70 5.14 -26.73 -0.14 -1.84 16 16 C 0.08 1.05 3.28 -25.95 -0.09 0.97 16 17 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 18 C -0.15 -1.62 6.63 -25.16 -0.17 -1.79 16 19 C -0.16 -1.46 7.09 -25.16 -0.18 -1.64 16 20 C 0.04 0.47 7.63 37.93 0.29 0.76 16 21 O -0.37 -5.64 11.00 -35.23 -0.39 -6.03 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.04 0.65 6.61 -51.93 -0.34 0.31 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.10 2.69 5.94 -51.93 -0.31 2.38 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.31 6.42 6.61 -39.29 -0.26 6.16 16 29 H 0.02 0.44 7.89 -51.93 -0.41 0.03 16 30 H 0.07 1.53 7.97 -51.93 -0.41 1.12 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -29.87 301.90 -8.27 -38.14 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.75 Total: 3.26 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -0.61 Total: -15.31 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.05 Total: -41.46 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.39 Total: -6.03 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.87 -8.27 -38.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038096852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.523 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds