Wall clock time and date at job start Sun Mar 29 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47304 * 2 1 4 4 H 1.08997 * 109.47015 * 305.66260 * 3 2 1 5 5 C 1.50696 * 109.47025 * 185.65933 * 3 2 1 6 6 H 1.07996 * 120.00010 * 239.99846 * 5 3 2 7 7 C 1.37881 * 119.99964 * 59.99903 * 5 3 2 8 8 N 1.31509 * 120.00067 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46966 * 89.99995 * 9 7 5 11 11 H 1.48492 * 109.47178 * 210.00506 * 9 7 5 12 12 H 1.48502 * 109.47054 * 330.00460 * 9 7 5 13 13 N 1.46900 * 109.47044 * 65.65781 * 3 2 1 14 14 C 1.46900 * 111.00049 * 205.58191 * 13 3 2 15 15 C 1.52999 * 109.46732 * 183.44374 * 14 13 3 16 16 C 1.53009 * 109.46733 * 179.97438 * 15 14 13 17 17 H 1.09005 * 110.41866 * 304.14410 * 16 15 14 18 18 C 1.54477 * 110.36904 * 181.83449 * 16 15 14 19 19 C 1.54516 * 104.06020 * 217.18777 * 18 16 15 20 20 C 1.54479 * 104.06246 * 0.02562 * 19 18 16 21 21 O 1.44424 * 104.80341 * 23.97602 * 20 19 18 22 22 H 1.09002 * 109.47056 * 175.51967 * 1 2 3 23 23 H 1.09005 * 109.46765 * 295.51434 * 1 2 3 24 24 H 1.08997 * 109.47421 * 55.50982 * 1 2 3 25 25 H 1.09002 * 109.46500 * 240.00456 * 2 1 3 26 26 H 1.08994 * 109.47286 * 120.00343 * 2 1 3 27 27 H 0.97005 * 120.00297 * 180.02562 * 8 7 5 28 28 H 1.00902 * 111.00153 * 329.53953 * 13 3 2 29 29 H 1.09000 * 109.47286 * 63.44298 * 14 13 3 30 30 H 1.09003 * 109.46758 * 303.44263 * 14 13 3 31 31 H 1.08999 * 109.47401 * 60.00710 * 15 14 13 32 32 H 1.08990 * 109.47479 * 299.99774 * 15 14 13 33 33 H 1.08997 * 110.51607 * 335.83535 * 18 16 15 34 34 H 1.08999 * 110.51160 * 98.41230 * 18 16 15 35 35 H 1.09003 * 110.50542 * 118.64889 * 19 18 16 36 36 H 1.09004 * 110.50900 * 241.21923 * 19 18 16 37 37 H 1.09005 * 110.36704 * 265.14672 * 20 19 18 38 38 H 1.08996 * 110.37139 * 142.80696 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 -0.8349 5 6 3.5405 1.4447 -0.1401 6 1 4.1542 1.8863 0.6311 7 6 4.1299 0.8830 -1.2529 8 7 3.3825 0.3457 -2.1922 9 14 5.9897 0.8864 -1.4269 10 1 6.5463 -0.3474 -0.8160 11 1 6.3521 0.9331 -2.8662 12 1 6.5493 2.0763 -0.7367 13 7 1.6651 2.0944 1.2619 14 6 1.5711 3.5508 1.0943 15 6 1.2638 4.2006 2.4450 16 6 1.1665 5.7177 2.2706 17 1 2.0798 6.1082 1.8216 18 6 0.9020 6.3994 3.6313 19 6 -0.0600 7.5593 3.2894 20 6 -0.2633 7.4405 1.7626 21 8 0.0210 6.0575 1.4589 22 1 -0.3633 -1.0245 -0.0803 23 1 -0.3633 0.4427 0.9275 24 1 -0.3634 0.5819 -0.8470 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.7971 -0.0498 -2.9749 28 1 0.8022 1.7154 1.6223 29 1 0.7738 3.7847 0.3888 30 1 2.5175 3.9345 0.7134 31 1 2.0612 3.9669 3.1504 32 1 0.3175 3.8169 2.8259 33 1 0.4288 5.7019 4.3225 34 1 1.8309 6.7828 4.0534 35 1 -1.0087 7.4350 3.8115 36 1 0.3922 8.5180 3.5435 37 1 0.4307 8.0952 1.2354 38 1 -1.2920 7.6837 1.4968 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038096852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:35 Heat of formation + Delta-G solvation = -85.275298 kcal Electronic energy + Delta-G solvation = -16111.517245 eV Core-core repulsion = 13566.250224 eV Total energy + Delta-G solvation = -2545.267021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37548 -38.22840 -35.11082 -33.65453 -32.95139 -31.59136 -28.87368 -27.29794 -24.81244 -23.57627 -22.18484 -21.90435 -21.29562 -18.39690 -17.34526 -16.92237 -16.74077 -16.44194 -16.06340 -15.61488 -14.80267 -14.59551 -14.49371 -13.98716 -13.59670 -13.42439 -13.09530 -12.82669 -12.67485 -12.60806 -12.52740 -12.25363 -12.08577 -11.96175 -11.81454 -11.53105 -11.45539 -11.17288 -11.01558 -10.69247 -10.42884 -9.02476 -8.06718 -6.19345 1.41553 1.42137 1.52841 2.44108 3.03268 3.17766 3.48168 3.77041 3.96742 4.06044 4.14147 4.38815 4.40252 4.48077 4.49627 4.55815 4.65833 4.71452 4.77094 4.85614 4.91403 4.98350 5.06988 5.12391 5.19374 5.20826 5.26803 5.30916 5.37435 5.59566 5.74483 5.88822 5.99611 6.35672 6.49409 6.93786 7.00434 7.49608 8.96959 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.005961 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.727982 B = 4695.975974 C = 5251.300917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.222 3.778 4 H -0.038 1.038 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.686 5.686 14 C 0.076 3.924 15 C -0.096 4.096 16 C 0.071 3.929 17 H 0.062 0.938 18 C -0.145 4.145 19 C -0.148 4.148 20 C 0.032 3.968 21 O -0.402 6.402 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.004 0.996 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 11.771 10.699 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.113 3.887 4 H -0.021 1.021 5 C -0.552 4.552 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.562 5.562 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.317 5.317 14 C -0.054 4.054 15 C -0.134 4.134 16 C 0.013 3.987 17 H 0.080 0.920 18 C -0.183 4.183 19 C -0.185 4.185 20 C -0.044 4.044 21 O -0.322 6.322 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.891 11.565 10.614 16.767 hybrid contribution 0.253 0.024 -1.077 1.107 sum -5.639 11.590 9.537 16.033 Atomic orbital electron populations 1.21752 0.96343 1.01189 1.00376 1.21591 0.94193 0.98796 1.01335 1.18958 0.94251 0.90779 0.84673 1.02085 1.21469 0.92686 1.36691 1.04304 0.93157 1.25739 1.02621 0.95268 0.95459 1.70014 1.36357 1.39932 1.09891 0.85538 0.80375 0.78570 0.77018 1.19920 1.20898 1.19632 1.60635 1.36950 1.03439 1.30700 1.21701 0.98326 0.88769 0.96584 1.21548 1.02582 0.92557 0.96681 1.23101 0.89100 0.95235 0.91260 0.91964 1.22976 1.01094 0.97862 0.96383 1.22927 1.00622 0.99537 0.95443 1.23618 1.02177 0.82830 0.95796 1.89172 1.48847 1.28233 1.65989 0.92109 0.92385 0.94866 0.91364 0.94171 0.93043 0.85471 0.97765 0.93682 0.89359 0.91171 0.90122 0.89044 0.89957 0.88710 0.92016 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 9.67 71.98 0.70 -4.81 16 2 C -0.12 -5.94 5.36 30.60 0.16 -5.77 16 3 C 0.22 11.80 2.02 44.17 0.09 11.89 16 4 H -0.04 -2.31 7.83 -2.39 -0.02 -2.33 16 5 C -0.51 -29.75 8.59 25.60 0.22 -29.53 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.40 5.29 84.66 0.45 0.85 16 8 N -0.92 -54.75 11.29 21.45 0.24 -54.50 16 9 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.69 -30.70 6.28 -495.46 -3.11 -33.81 16 14 C 0.08 3.12 5.37 86.30 0.46 3.59 16 15 C -0.10 -2.95 5.14 30.60 0.16 -2.80 16 16 C 0.07 1.91 3.28 31.10 0.10 2.01 16 17 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 18 C -0.15 -2.76 6.63 31.61 0.21 -2.55 16 19 C -0.15 -2.35 7.09 31.61 0.22 -2.12 16 20 C 0.03 0.66 7.63 72.48 0.55 1.22 16 21 O -0.40 -12.14 11.00 -148.98 -1.64 -13.78 16 22 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 2.02 6.61 -2.38 -0.02 2.00 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 3.80 5.94 -2.39 -0.01 3.78 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 28 H 0.33 13.13 6.61 -89.69 -0.59 12.53 16 29 H 0.00 0.18 7.89 -2.39 -0.02 0.16 16 30 H 0.04 2.05 7.97 -2.39 -0.02 2.03 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 1.47 7.87 -2.39 -0.02 1.45 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -65.43 301.90 1.26 -64.16 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.42 Total: 18.71 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 3.33 Total: -28.03 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.87 Total: -88.31 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.64 Total: -13.78 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.43 1.26 -64.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038096852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.112 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds