Wall clock time and date at job start Sun Mar 29 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47013 * 2 1 4 4 H 1.08999 * 109.47141 * 54.81309 * 3 2 1 5 5 C 1.50696 * 109.47318 * 174.82060 * 3 2 1 6 6 H 1.08007 * 120.00199 * 119.99793 * 5 3 2 7 7 C 1.37875 * 119.99778 * 299.99780 * 5 3 2 8 8 N 1.31515 * 120.00147 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99780 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47284 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47148 * 120.00065 * 9 7 5 12 12 H 1.48503 * 109.46881 * 240.00045 * 9 7 5 13 13 N 1.46907 * 109.46849 * 294.81926 * 3 2 1 14 14 C 1.46906 * 110.99926 * 153.84811 * 13 3 2 15 15 C 1.53001 * 109.46943 * 175.13343 * 14 13 3 16 16 C 1.52993 * 109.46796 * 179.97438 * 15 14 13 17 17 H 1.09004 * 109.86912 * 54.30429 * 16 15 14 18 18 C 1.54102 * 109.87723 * 175.30588 * 16 15 14 19 19 C 1.54811 * 104.18886 * 121.45847 * 18 16 15 20 20 C 1.54997 * 102.08873 * 20.87935 * 19 18 16 21 21 O 1.43739 * 109.88400 * 293.29502 * 16 15 14 22 22 H 1.09006 * 109.46960 * 186.25175 * 1 2 3 23 23 H 1.09001 * 109.47641 * 306.25428 * 1 2 3 24 24 H 1.09000 * 109.47288 * 66.25682 * 1 2 3 25 25 H 1.08996 * 109.47725 * 240.00384 * 2 1 3 26 26 H 1.09000 * 109.47497 * 119.99140 * 2 1 3 27 27 H 0.97002 * 119.99624 * 180.02562 * 8 7 5 28 28 H 1.00904 * 111.00086 * 29.89293 * 13 3 2 29 29 H 1.08996 * 109.46887 * 55.13534 * 14 13 3 30 30 H 1.09001 * 109.46392 * 295.13322 * 14 13 3 31 31 H 1.09007 * 109.46782 * 59.99742 * 15 14 13 32 32 H 1.08994 * 109.47283 * 299.99901 * 15 14 13 33 33 H 1.09000 * 110.48642 * 240.13251 * 18 16 15 34 34 H 1.08998 * 110.48799 * 2.77966 * 18 16 15 35 35 H 1.08995 * 110.91161 * 139.07936 * 19 18 16 36 36 H 1.09002 * 110.90639 * 262.65300 * 19 18 16 37 37 H 1.08999 * 110.61922 * 81.48550 * 20 19 18 38 38 H 1.09002 * 110.61515 * 204.31875 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6027 1.9825 0.8399 5 6 3.5414 1.4446 0.1283 6 1 4.1491 1.8884 -0.6466 7 6 4.1395 0.8799 1.2348 8 7 3.3996 0.3400 2.1785 9 14 6.0007 0.8830 1.3941 10 1 6.5980 1.5467 0.2076 11 1 6.3911 1.6198 2.6229 12 1 6.4926 -0.5156 1.4782 13 7 1.6550 2.0980 -1.2571 14 6 1.5490 3.5526 -1.0815 15 6 1.2667 4.2104 -2.4338 16 6 1.1557 5.7252 -2.2507 17 1 2.0488 6.1048 -1.7542 18 6 0.9886 6.4079 -3.6221 19 6 -0.3541 7.1697 -3.5057 20 6 -0.5252 7.2932 -1.9702 21 8 -0.0089 6.0392 -1.4690 22 1 -0.3633 -1.0216 0.1119 23 1 -0.3634 0.6077 0.8287 24 1 -0.3634 0.4138 -0.9407 25 1 1.8934 -0.5137 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.8205 -0.0570 2.9572 28 1 0.7941 1.7135 -1.6166 29 1 2.4849 3.9390 -0.6779 30 1 0.7356 3.7769 -0.3914 31 1 0.3307 3.8239 -2.8374 32 1 2.0800 3.9860 -3.1238 33 1 1.8075 7.1038 -3.8042 34 1 0.9367 5.6624 -4.4156 35 1 -0.2847 8.1535 -3.9697 36 1 -1.1683 6.5919 -3.9431 37 1 0.0597 8.1283 -1.5847 38 1 -1.5770 7.4101 -1.7094 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038096853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:37 Heat of formation + Delta-G solvation = -65.446826 kcal Electronic energy + Delta-G solvation = -16128.603961 eV Core-core repulsion = 13584.196767 eV Total energy + Delta-G solvation = -2544.407194 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38027 -36.35346 -33.38547 -32.10511 -31.63950 -30.11306 -27.18984 -25.65929 -23.04345 -22.25444 -21.11119 -20.67393 -19.38672 -16.32354 -16.23365 -15.79215 -15.41025 -14.67383 -14.42222 -13.77618 -13.64180 -13.12104 -12.77860 -12.52945 -12.24764 -11.80703 -11.68756 -11.47766 -11.19635 -11.13313 -10.91209 -10.78172 -10.61131 -10.49207 -10.33076 -9.89317 -9.58837 -9.58436 -9.39315 -8.97219 -8.28084 -7.09969 -5.89960 -3.93620 3.35284 3.42838 3.48265 3.95033 4.50085 4.55036 4.71028 4.89435 5.02609 5.23735 5.37879 5.48759 5.57137 5.59727 5.64830 5.75094 5.89830 5.96391 6.07849 6.13975 6.23252 6.24813 6.35484 6.48966 6.70363 6.83723 6.92038 7.04216 7.17037 7.28520 7.60067 7.85703 7.99736 8.41614 8.48821 8.87055 9.14749 9.71016 11.15588 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.005967 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.295089 B = 4691.351972 C = 5246.101114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.689 5.689 14 C 0.070 3.930 15 C -0.112 4.112 16 C 0.076 3.924 17 H 0.068 0.932 18 C -0.151 4.151 19 C -0.155 4.155 20 C 0.044 3.956 21 O -0.369 6.369 22 H 0.036 0.964 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.258 0.742 28 H 0.315 0.685 29 H 0.070 0.930 30 H 0.020 0.980 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 10.832 -9.407 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.320 5.320 14 C -0.060 4.060 15 C -0.150 4.150 16 C 0.018 3.982 17 H 0.086 0.914 18 C -0.189 4.189 19 C -0.193 4.193 20 C -0.033 4.033 21 O -0.289 6.289 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.204 10.632 -9.289 15.421 hybrid contribution 0.241 0.191 0.530 0.613 sum -5.963 10.823 -8.759 15.147 Atomic orbital electron populations 1.21878 0.99626 0.99621 0.99590 1.21764 0.91219 1.00433 1.02976 1.19158 0.95370 0.89909 0.84597 0.98100 1.21266 0.91314 1.35968 1.04277 0.92089 1.24970 0.98065 0.95778 0.95873 1.69892 1.34547 1.39684 1.09637 0.86503 0.85933 0.77542 0.77785 1.19830 1.21277 1.21173 1.60708 1.36055 1.02219 1.33032 1.21745 1.00151 0.89833 0.94223 1.21779 1.01936 0.91784 0.99480 1.22818 0.88910 0.96388 0.90057 0.91370 1.23016 0.97525 0.99911 0.98476 1.23115 0.98088 1.00853 0.97214 1.23534 0.99605 0.87688 0.92485 1.89000 1.43740 1.38352 1.57774 0.94444 0.93906 0.94595 0.94101 0.88323 0.93222 0.86859 0.91190 0.96163 0.92119 0.90292 0.90872 0.90258 0.90608 0.90659 0.92499 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.63 37.16 0.36 -2.68 16 2 C -0.13 -3.06 5.36 -26.73 -0.14 -3.21 16 3 C 0.22 5.63 2.03 -68.86 -0.14 5.49 16 4 H 0.00 0.04 7.84 -51.93 -0.41 -0.37 16 5 C -0.49 -13.90 8.60 -34.44 -0.30 -14.20 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -26.17 11.29 55.43 0.63 -25.55 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.69 -15.34 6.27 -107.94 -0.68 -16.02 16 14 C 0.07 1.42 5.36 -3.82 -0.02 1.40 16 15 C -0.11 -1.77 5.00 -26.73 -0.13 -1.91 16 16 C 0.08 1.07 3.40 -26.16 -0.09 0.98 16 17 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.15 -1.61 6.64 -25.20 -0.17 -1.78 16 19 C -0.15 -1.45 7.16 -24.72 -0.18 -1.63 16 20 C 0.04 0.48 7.72 38.21 0.29 0.77 16 21 O -0.37 -5.65 10.84 -35.23 -0.38 -6.03 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.65 6.66 -51.93 -0.35 0.31 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.31 6.45 6.62 -39.29 -0.26 6.19 16 29 H 0.07 1.53 7.97 -51.93 -0.41 1.12 16 30 H 0.02 0.43 7.89 -51.93 -0.41 0.02 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.81 7.70 -51.93 -0.40 0.41 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -30.00 301.75 -8.25 -38.26 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.74 Total: 3.25 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -0.61 Total: -15.34 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.05 Total: -41.57 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.38 Total: -6.03 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.00 -8.25 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038096853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.190 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds