Wall clock time and date at job start Sun Mar 29 2020 21:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47013 * 2 1 4 4 H 1.08999 * 109.47141 * 54.81309 * 3 2 1 5 5 C 1.50696 * 109.47318 * 174.82060 * 3 2 1 6 6 H 1.08007 * 120.00199 * 119.99793 * 5 3 2 7 7 C 1.37875 * 119.99778 * 299.99780 * 5 3 2 8 8 N 1.31515 * 120.00147 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99780 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47284 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47148 * 120.00065 * 9 7 5 12 12 H 1.48503 * 109.46881 * 240.00045 * 9 7 5 13 13 N 1.46907 * 109.46849 * 294.81926 * 3 2 1 14 14 C 1.46906 * 110.99926 * 153.84811 * 13 3 2 15 15 C 1.53001 * 109.46943 * 175.13343 * 14 13 3 16 16 C 1.52993 * 109.46796 * 179.97438 * 15 14 13 17 17 H 1.09004 * 109.86912 * 54.30429 * 16 15 14 18 18 C 1.54102 * 109.87723 * 175.30588 * 16 15 14 19 19 C 1.54811 * 104.18886 * 121.45847 * 18 16 15 20 20 C 1.54997 * 102.08873 * 20.87935 * 19 18 16 21 21 O 1.43739 * 109.88400 * 293.29502 * 16 15 14 22 22 H 1.09006 * 109.46960 * 186.25175 * 1 2 3 23 23 H 1.09001 * 109.47641 * 306.25428 * 1 2 3 24 24 H 1.09000 * 109.47288 * 66.25682 * 1 2 3 25 25 H 1.08996 * 109.47725 * 240.00384 * 2 1 3 26 26 H 1.09000 * 109.47497 * 119.99140 * 2 1 3 27 27 H 0.97002 * 119.99624 * 180.02562 * 8 7 5 28 28 H 1.00904 * 111.00086 * 29.89293 * 13 3 2 29 29 H 1.08996 * 109.46887 * 55.13534 * 14 13 3 30 30 H 1.09001 * 109.46392 * 295.13322 * 14 13 3 31 31 H 1.09007 * 109.46782 * 59.99742 * 15 14 13 32 32 H 1.08994 * 109.47283 * 299.99901 * 15 14 13 33 33 H 1.09000 * 110.48642 * 240.13251 * 18 16 15 34 34 H 1.08998 * 110.48799 * 2.77966 * 18 16 15 35 35 H 1.08995 * 110.91161 * 139.07936 * 19 18 16 36 36 H 1.09002 * 110.90639 * 262.65300 * 19 18 16 37 37 H 1.08999 * 110.61922 * 81.48550 * 20 19 18 38 38 H 1.09002 * 110.61515 * 204.31875 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6027 1.9825 0.8399 5 6 3.5414 1.4446 0.1283 6 1 4.1491 1.8884 -0.6466 7 6 4.1395 0.8799 1.2348 8 7 3.3996 0.3400 2.1785 9 14 6.0007 0.8830 1.3941 10 1 6.5980 1.5467 0.2076 11 1 6.3911 1.6198 2.6229 12 1 6.4926 -0.5156 1.4782 13 7 1.6550 2.0980 -1.2571 14 6 1.5490 3.5526 -1.0815 15 6 1.2667 4.2104 -2.4338 16 6 1.1557 5.7252 -2.2507 17 1 2.0488 6.1048 -1.7542 18 6 0.9886 6.4079 -3.6221 19 6 -0.3541 7.1697 -3.5057 20 6 -0.5252 7.2932 -1.9702 21 8 -0.0089 6.0392 -1.4690 22 1 -0.3633 -1.0216 0.1119 23 1 -0.3634 0.6077 0.8287 24 1 -0.3634 0.4138 -0.9407 25 1 1.8934 -0.5137 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.8205 -0.0570 2.9572 28 1 0.7941 1.7135 -1.6166 29 1 2.4849 3.9390 -0.6779 30 1 0.7356 3.7769 -0.3914 31 1 0.3307 3.8239 -2.8374 32 1 2.0800 3.9860 -3.1238 33 1 1.8075 7.1038 -3.8042 34 1 0.9367 5.6624 -4.4156 35 1 -0.2847 8.1535 -3.9697 36 1 -1.1683 6.5919 -3.9431 37 1 0.0597 8.1283 -1.5847 38 1 -1.5770 7.4101 -1.7094 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038096853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:36 Heat of formation + Delta-G solvation = -85.196238 kcal Electronic energy + Delta-G solvation = -16129.460360 eV Core-core repulsion = 13584.196767 eV Total energy + Delta-G solvation = -2545.263593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39386 -38.22211 -35.09703 -33.66005 -32.97072 -31.57799 -28.87701 -27.27266 -24.78413 -23.52792 -22.32407 -21.89917 -21.29021 -18.39665 -17.28722 -16.99595 -16.68650 -16.47195 -16.03198 -15.64607 -14.74564 -14.51878 -14.45482 -14.02978 -13.64507 -13.42354 -13.10571 -12.87113 -12.72235 -12.59589 -12.51749 -12.21880 -12.07137 -11.96892 -11.80655 -11.55480 -11.50720 -11.14951 -11.01375 -10.59956 -10.43866 -9.02142 -8.07080 -6.19586 1.40332 1.41485 1.54223 2.43948 3.01400 3.17532 3.51357 3.71170 3.99262 4.04519 4.15430 4.38584 4.40975 4.47334 4.49088 4.55471 4.67630 4.74297 4.78242 4.85715 4.92386 4.96687 5.06683 5.11005 5.19242 5.23217 5.28586 5.31705 5.37633 5.59446 5.74504 5.88683 6.05874 6.35557 6.49624 6.93835 7.00365 7.49480 8.96826 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029802 B = 0.005967 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.295089 B = 4691.351972 C = 5246.101114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.221 3.779 4 H -0.038 1.038 5 C -0.511 4.511 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.076 3.924 15 C -0.099 4.099 16 C 0.073 3.927 17 H 0.058 0.942 18 C -0.146 4.146 19 C -0.147 4.147 20 C 0.033 3.967 21 O -0.404 6.404 22 H 0.060 0.940 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.044 0.956 30 H 0.004 0.996 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 11.588 -11.061 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.113 3.887 4 H -0.021 1.021 5 C -0.550 4.550 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.562 5.562 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.317 5.317 14 C -0.054 4.054 15 C -0.137 4.137 16 C 0.015 3.985 17 H 0.076 0.924 18 C -0.184 4.184 19 C -0.184 4.184 20 C -0.043 4.043 21 O -0.324 6.324 22 H 0.079 0.921 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.411 11.398 -10.961 17.063 hybrid contribution 0.265 -0.014 1.078 1.110 sum -6.147 11.384 -9.883 16.280 Atomic orbital electron populations 1.21750 0.96322 1.01162 1.00419 1.21592 0.94200 0.98791 1.01340 1.18969 0.94235 0.90754 0.84739 1.02080 1.21499 0.92654 1.36421 1.04441 0.93189 1.25742 1.02665 0.95267 0.95449 1.70024 1.36329 1.39916 1.09964 0.85486 0.80372 0.77818 0.77817 1.19405 1.20745 1.20330 1.60638 1.36848 1.03287 1.30960 1.21708 0.98188 0.88786 0.96700 1.21669 1.02441 0.93085 0.96522 1.22820 0.88507 0.95085 0.92125 0.92369 1.22995 0.98958 1.00281 0.96156 1.23108 0.97284 1.02109 0.95907 1.23809 1.00323 0.86297 0.93832 1.88962 1.44129 1.40459 1.58894 0.92127 0.94869 0.92335 0.94168 0.91375 0.93048 0.85490 0.93784 0.97733 0.91268 0.89645 0.89263 0.89552 0.88014 0.90358 0.91647 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 9.63 71.98 0.69 -4.82 16 2 C -0.12 -5.95 5.36 30.59 0.16 -5.79 16 3 C 0.22 11.82 2.03 44.17 0.09 11.91 16 4 H -0.04 -2.31 7.84 -2.39 -0.02 -2.33 16 5 C -0.51 -29.77 8.60 25.60 0.22 -29.55 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.38 5.29 84.65 0.45 0.82 16 8 N -0.92 -54.86 11.29 21.45 0.24 -54.62 16 9 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 N -0.69 -30.85 6.27 -495.42 -3.11 -33.96 16 14 C 0.08 3.14 5.36 86.30 0.46 3.60 16 15 C -0.10 -3.08 5.00 30.59 0.15 -2.93 16 16 C 0.07 1.97 3.40 30.96 0.11 2.08 16 17 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 18 C -0.15 -2.74 6.64 31.59 0.21 -2.53 16 19 C -0.15 -2.31 7.16 31.90 0.23 -2.08 16 20 C 0.03 0.67 7.72 72.67 0.56 1.23 16 21 O -0.40 -12.17 10.84 -148.98 -1.61 -13.78 16 22 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 2.03 6.66 -2.39 -0.02 2.02 16 25 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 3.80 5.95 -2.39 -0.01 3.78 16 27 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.33 13.18 6.62 -89.69 -0.59 12.59 16 29 H 0.04 2.02 7.97 -2.39 -0.02 2.00 16 30 H 0.00 0.20 7.89 -2.39 -0.02 0.18 16 31 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.51 7.70 -2.39 -0.02 1.49 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.84 301.75 1.30 -64.55 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.42 Total: 18.47 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.33 Total: -28.04 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -2.87 Total: -88.58 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.61 Total: -13.78 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -65.84 1.30 -64.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038096853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.649 kcal (2) G-P(sol) polarization free energy of solvation -65.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds