Wall clock time and date at job start Sun Mar 29 2020 21:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.09000 * 109.47503 * 305.65395 * 3 2 1 5 5 C 1.50700 * 109.46958 * 185.65819 * 3 2 1 6 6 H 1.08011 * 120.00077 * 238.06536 * 5 3 2 7 7 C 1.37876 * 120.00239 * 58.06676 * 5 3 2 8 8 N 1.31513 * 120.00213 * 200.50937 * 7 5 3 9 9 Si 1.86797 * 119.99799 * 20.51009 * 7 5 3 10 10 H 1.48493 * 109.47310 * 95.27175 * 9 7 5 11 11 H 1.48503 * 109.46850 * 215.26991 * 9 7 5 12 12 H 1.48497 * 109.47179 * 335.27014 * 9 7 5 13 13 N 1.46899 * 109.47057 * 65.66175 * 3 2 1 14 14 C 1.46900 * 110.99648 * 255.76966 * 13 3 2 15 15 C 1.53003 * 109.46773 * 181.06078 * 14 13 3 16 16 C 1.53004 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.87177 * 54.29915 * 16 15 14 18 18 C 1.54101 * 109.88105 * 175.30761 * 16 15 14 19 19 C 1.54810 * 104.18896 * 121.45470 * 18 16 15 20 20 C 1.54999 * 102.09168 * 20.88284 * 19 18 16 21 21 O 1.43740 * 109.88117 * 293.29494 * 16 15 14 22 22 H 1.09004 * 109.47409 * 56.49178 * 1 2 3 23 23 H 1.09003 * 109.47377 * 176.49129 * 1 2 3 24 24 H 1.08999 * 109.47264 * 296.49365 * 1 2 3 25 25 H 1.08999 * 109.47080 * 240.00454 * 2 1 3 26 26 H 1.09004 * 109.47042 * 120.00008 * 2 1 3 27 27 H 0.96999 * 120.00142 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00102 * 131.81263 * 13 3 2 29 29 H 1.09000 * 109.47575 * 301.05741 * 14 13 3 30 30 H 1.09002 * 109.47146 * 61.06642 * 14 13 3 31 31 H 1.08995 * 109.47450 * 299.99882 * 15 14 13 32 32 H 1.08998 * 109.47263 * 60.00572 * 15 14 13 33 33 H 1.09005 * 110.48828 * 240.13389 * 18 16 15 34 34 H 1.09004 * 110.48321 * 2.77620 * 18 16 15 35 35 H 1.09003 * 110.90712 * 139.07784 * 19 18 16 36 36 H 1.09000 * 110.90948 * 262.65085 * 19 18 16 37 37 H 1.08999 * 110.61508 * 81.47605 * 20 19 18 38 38 H 1.08997 * 110.61685 * 204.31915 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5963 1.9848 -0.8350 5 6 3.5404 1.4448 -0.1401 6 1 4.1526 1.9141 0.6159 7 6 4.1316 0.8479 -1.2333 8 7 5.3951 0.4864 -1.1819 9 14 3.1382 0.5529 -2.7874 10 1 3.3562 1.6753 -3.7349 11 1 3.5727 -0.7192 -3.4186 12 1 1.6959 0.4679 -2.4443 13 7 1.6650 2.0944 1.2619 14 6 0.5383 3.0160 1.0638 15 6 0.1945 3.6940 2.3916 16 6 -0.9786 4.6543 2.1852 17 1 -1.8160 4.1242 1.7316 18 6 -1.4090 5.2542 3.5378 19 6 -1.2529 6.7819 3.3423 20 6 -1.2861 6.9168 1.7986 21 8 -0.5749 5.7446 1.3400 22 1 -0.3634 0.5673 -0.8569 23 1 -0.3634 -1.0258 -0.0629 24 1 -0.3634 0.4584 0.9197 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.8109 0.0661 -1.9509 28 1 2.4545 2.5712 1.6712 29 1 0.8130 3.7733 0.3296 30 1 -0.3277 2.4594 0.7052 31 1 -0.0802 2.9368 3.1259 32 1 1.0604 4.2506 2.7502 33 1 -2.4470 5.0013 3.7543 34 1 -0.7553 4.9028 4.3362 35 1 -2.0847 7.3193 3.7977 36 1 -0.3010 7.1301 3.7433 37 1 -2.3135 6.9068 1.4345 38 1 -0.7766 7.8268 1.4818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038096854.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:39 Heat of formation + Delta-G solvation = -60.245998 kcal Electronic energy + Delta-G solvation = -16214.013539 eV Core-core repulsion = 13669.831870 eV Total energy + Delta-G solvation = -2544.181669 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46668 -36.57842 -33.42320 -32.17812 -31.82191 -30.39756 -27.78282 -25.75653 -22.83615 -22.26001 -21.28125 -20.83318 -19.48417 -16.86815 -16.34600 -15.89941 -15.56410 -15.12968 -13.97061 -13.87891 -13.70626 -13.20729 -12.94743 -12.62257 -12.44601 -11.89695 -11.82103 -11.71695 -11.61434 -11.26581 -11.03699 -10.89806 -10.75260 -10.51942 -10.43914 -10.05696 -9.71526 -9.64225 -9.26924 -9.13748 -8.30997 -7.33111 -6.11946 -4.02740 3.31118 3.40870 3.46115 3.87176 4.45072 4.47985 4.62372 4.81810 4.93243 5.14753 5.19053 5.35555 5.48377 5.51297 5.58540 5.66809 5.80261 5.85713 5.91136 6.01750 6.12366 6.14920 6.20334 6.34716 6.51747 6.60007 6.77257 6.85925 6.96041 7.10658 7.14021 7.53230 7.72084 8.09878 8.43759 8.67635 8.99731 9.57119 11.00983 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037949 B = 0.005790 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.653308 B = 4834.730797 C = 4989.600508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.192 3.808 4 H 0.004 0.996 5 C -0.538 4.538 6 H 0.074 0.926 7 C 0.081 3.919 8 N -0.886 5.886 9 Si 0.861 3.139 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.251 1.251 13 N -0.683 5.683 14 C 0.060 3.940 15 C -0.114 4.114 16 C 0.077 3.923 17 H 0.066 0.934 18 C -0.152 4.152 19 C -0.155 4.155 20 C 0.044 3.956 21 O -0.369 6.369 22 H 0.036 0.964 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.263 0.737 28 H 0.337 0.663 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.794 9.265 7.353 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C 0.083 3.917 4 H 0.021 0.979 5 C -0.576 4.576 6 H 0.092 0.908 7 C -0.123 4.123 8 N -0.522 5.522 9 Si 0.688 3.312 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.175 1.175 13 N -0.314 5.314 14 C -0.070 4.070 15 C -0.152 4.152 16 C 0.019 3.981 17 H 0.084 0.916 18 C -0.189 4.189 19 C -0.193 4.193 20 C -0.033 4.033 21 O -0.288 6.288 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.155 0.845 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.881 8.626 7.284 18.679 hybrid contribution -0.089 0.559 -1.254 1.376 sum -14.971 9.185 6.029 18.570 Atomic orbital electron populations 1.21848 0.98651 0.99295 1.00648 1.21838 0.92710 0.99376 1.00582 1.19427 0.95211 0.90730 0.86335 0.97864 1.21259 0.89657 1.38191 1.08446 0.90818 1.24875 0.94752 0.93898 0.98755 1.70048 1.13020 1.38961 1.30198 0.87220 0.82396 0.77583 0.83987 1.20978 1.21289 1.17512 1.60607 1.09890 1.32516 1.28340 1.21974 0.95776 0.94159 0.95125 1.21785 0.97185 0.97080 0.99159 1.22796 0.97253 0.88738 0.89356 0.91611 1.23014 1.02155 0.95258 0.98509 1.23120 1.02778 0.96388 0.97009 1.23543 0.96854 0.89948 0.92953 1.89013 1.66536 1.17861 1.55381 0.94457 0.94765 0.92604 0.93481 0.92310 0.92711 0.84511 0.95388 0.91979 0.90301 0.91531 0.90896 0.90169 0.90563 0.90522 0.92526 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.93 37.15 0.33 -2.49 16 2 C -0.11 -2.45 4.83 -26.73 -0.13 -2.58 16 3 C 0.19 4.68 1.74 -68.86 -0.12 4.56 16 4 H 0.00 0.09 6.46 -51.93 -0.34 -0.24 16 5 C -0.54 -15.30 9.07 -34.44 -0.31 -15.61 16 6 H 0.07 2.25 7.62 -52.48 -0.40 1.85 16 7 C 0.08 2.35 5.24 -17.82 -0.09 2.26 16 8 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 9 Si 0.86 21.69 25.71 -169.99 -4.37 17.32 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.25 -6.03 5.57 56.52 0.31 -5.72 16 13 N -0.68 -14.41 6.07 -107.95 -0.66 -15.06 16 14 C 0.06 1.08 5.02 -3.82 -0.02 1.06 16 15 C -0.11 -1.65 4.95 -26.73 -0.13 -1.79 16 16 C 0.08 0.98 3.40 -26.15 -0.09 0.89 16 17 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 18 C -0.15 -1.47 6.64 -25.20 -0.17 -1.64 16 19 C -0.16 -1.37 7.16 -24.72 -0.18 -1.55 16 20 C 0.04 0.46 7.72 38.21 0.29 0.75 16 21 O -0.37 -5.36 10.84 -35.23 -0.38 -5.75 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 1.01 6.72 -51.93 -0.35 0.66 16 25 H 0.05 1.13 4.62 -51.93 -0.24 0.89 16 26 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.34 7.25 7.85 -39.29 -0.31 6.95 16 29 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 30 H 0.06 1.11 6.31 -51.93 -0.33 0.78 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.76 7.70 -51.93 -0.40 0.36 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 294.05 15.07 4.43 4.43 Total: -1.00 -30.69 294.05 -7.45 -38.15 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.64 Total: 3.45 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.61 Total: -16.15 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.12 Total: -41.46 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.37 Total: 17.32 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.69 -7.45 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038096854.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.100 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds