Wall clock time and date at job start Sun Mar 29 2020 21:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47135 * 2 1 4 4 H 1.09003 * 109.54454 * 54.73247 * 3 2 1 5 5 C 1.53104 * 109.50734 * 294.62696 * 3 2 1 6 6 O 1.43016 * 109.25868 * 183.22091 * 5 3 2 7 7 C 1.43010 * 113.74321 * 58.66413 * 6 5 3 8 8 H 1.09002 * 109.54276 * 61.28770 * 7 6 5 9 9 C 1.53002 * 109.50901 * 181.39403 * 7 6 5 10 10 C 1.53090 * 109.26160 * 301.33341 * 7 6 5 11 11 N 1.47012 * 109.50800 * 174.84492 * 3 2 1 12 12 C 1.46906 * 110.99822 * 302.32500 * 11 3 2 13 13 C 1.52998 * 109.46811 * 304.13045 * 12 11 3 14 14 C 1.50703 * 109.47058 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99588 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00267 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99836 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00155 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47093 * 89.99969 * 18 16 14 20 20 H 1.48501 * 109.47433 * 210.00207 * 18 16 14 21 21 H 1.48500 * 109.46916 * 330.00090 * 18 16 14 22 22 H 1.08996 * 109.47603 * 65.68641 * 1 2 3 23 23 H 1.09002 * 109.47234 * 185.68494 * 1 2 3 24 24 H 1.09004 * 109.47240 * 305.68612 * 1 2 3 25 25 H 1.09004 * 109.47223 * 240.00083 * 2 1 3 26 26 H 1.08997 * 109.47017 * 119.99833 * 2 1 3 27 27 H 1.08997 * 109.50648 * 63.27901 * 5 3 2 28 28 H 1.09008 * 109.53391 * 303.17016 * 5 3 2 29 29 H 1.08997 * 109.47319 * 179.78736 * 9 7 6 30 30 H 1.09001 * 109.47253 * 299.78757 * 9 7 6 31 31 H 1.09000 * 109.46616 * 59.78489 * 9 7 6 32 32 H 1.09006 * 109.50631 * 296.91092 * 10 7 6 33 33 H 1.08997 * 109.51012 * 176.78124 * 10 7 6 34 34 H 1.09004 * 109.46951 * 184.13491 * 12 11 3 35 35 H 1.08993 * 109.47154 * 64.13134 * 12 11 3 36 36 H 1.09003 * 109.47445 * 60.00192 * 13 12 11 37 37 H 1.09001 * 109.47593 * 299.99917 * 13 12 11 38 38 H 0.97005 * 120.00024 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9840 0.8387 5 6 1.6434 2.1249 -1.3119 6 8 2.1866 3.4476 -1.3385 7 6 3.6112 3.4875 -1.2200 8 1 4.0619 2.9559 -2.0581 9 6 4.0838 4.9428 -1.2246 10 6 4.0277 2.8190 0.0927 11 7 3.5048 1.4453 0.1245 12 6 3.9307 0.7480 1.3454 13 6 3.2513 1.3845 2.5595 14 6 3.6886 0.6696 3.8120 15 1 4.3815 -0.1565 3.7483 16 6 3.2035 1.0693 5.0391 17 7 2.3593 2.0748 5.1166 18 14 3.7450 0.1827 6.5915 19 1 4.9610 0.8377 7.1371 20 1 2.6567 0.2409 7.6002 21 1 4.0480 -1.2354 6.2715 22 1 -0.3634 0.4231 -0.9364 23 1 -0.3634 -1.0226 0.1018 24 1 -0.3634 0.5995 0.8347 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5569 2.1761 -1.3816 28 1 2.0356 1.5534 -2.1532 29 1 5.1693 4.9726 -1.1305 30 1 3.7870 5.4182 -2.1595 31 1 3.6316 5.4741 -0.3872 32 1 3.6219 3.3825 0.9330 33 1 5.1153 2.7960 0.1605 34 1 5.0126 0.8281 1.4509 35 1 3.6488 -0.3029 1.2807 36 1 2.1693 1.3044 2.4540 37 1 3.5332 2.4354 2.6243 38 1 2.0177 2.3559 5.9799 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224095.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:16 Heat of formation + Delta-G solvation = -59.704622 kcal Electronic energy + Delta-G solvation = -16870.651776 eV Core-core repulsion = 14326.493583 eV Total energy + Delta-G solvation = -2544.158193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62829 -36.19491 -33.97930 -32.86075 -31.41165 -29.44991 -27.12063 -25.86822 -24.02243 -23.00174 -21.35956 -20.84262 -18.76481 -16.52141 -16.39241 -15.63241 -14.99608 -14.58985 -14.33760 -14.25727 -13.44606 -13.25783 -12.77066 -12.63938 -12.30600 -12.13117 -12.05082 -11.62289 -11.23160 -11.15533 -10.93973 -10.87427 -10.80916 -10.62734 -10.35505 -10.13125 -9.86322 -9.66993 -9.15988 -9.07373 -8.37004 -7.53750 -6.03165 -4.06394 3.29243 3.35720 3.38889 4.01583 4.37072 4.46579 5.08876 5.22143 5.29397 5.31930 5.38005 5.44543 5.57194 5.66912 5.76493 5.78382 5.88999 5.92676 5.99356 6.15786 6.20413 6.26275 6.29499 6.37501 6.42625 6.58599 6.59348 6.72566 6.91432 7.42634 7.49886 7.54377 7.66576 7.81868 7.97528 8.39355 9.00651 9.57897 11.07733 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.007707 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.490330 B = 3632.007623 C = 4189.533044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.046 3.954 4 H 0.063 0.937 5 C 0.071 3.929 6 O -0.387 6.387 7 C 0.090 3.910 8 H 0.059 0.941 9 C -0.143 4.143 10 C 0.022 3.978 11 N -0.538 5.538 12 C 0.054 3.946 13 C -0.008 4.008 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.021 0.979 37 H 0.015 0.985 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 0.501 -12.368 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.063 4.063 4 H 0.080 0.920 5 C -0.006 4.006 6 O -0.306 6.306 7 C 0.032 3.968 8 H 0.077 0.923 9 C -0.201 4.201 10 C -0.106 4.106 11 N -0.262 5.262 12 C -0.073 4.073 13 C -0.046 4.046 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.033 0.967 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.151 0.511 -12.673 12.684 hybrid contribution 0.096 -0.249 1.826 1.845 sum -0.056 0.263 -10.848 10.851 Atomic orbital electron populations 1.21786 0.95988 1.01571 1.01498 1.21520 0.95192 0.95703 1.02942 1.22303 0.89296 0.96922 0.97773 0.91955 1.22729 0.98278 0.83130 0.96422 1.87929 1.20770 1.27626 1.94256 1.22145 0.81513 0.96394 0.96779 0.92258 1.21737 1.00948 0.94707 1.02717 1.22749 1.00423 0.90200 0.97247 1.62632 1.09180 1.14846 1.39533 1.22369 0.99397 0.97820 0.87669 1.19647 0.96398 0.96276 0.92281 1.21150 1.26904 1.16373 0.91458 0.92647 1.25021 0.95042 0.95105 0.99173 1.69971 1.31476 1.26969 1.24853 0.86604 0.78255 0.80152 0.83066 1.20674 1.21218 1.19833 0.93174 0.92801 0.92369 0.91971 0.90380 0.89001 0.93089 0.91137 0.92078 0.91771 0.93028 0.90386 0.92147 0.91473 0.96071 0.96717 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.53 37.16 0.35 -1.73 16 2 C -0.12 -1.85 5.20 -26.73 -0.14 -1.98 16 3 C 0.05 0.81 1.48 -67.60 -0.10 0.71 16 4 H 0.06 1.32 6.38 -51.93 -0.33 0.98 16 5 C 0.07 1.10 5.97 37.21 0.22 1.32 16 6 O -0.39 -6.51 10.47 -35.23 -0.37 -6.88 16 7 C 0.09 1.37 3.43 -26.68 -0.09 1.27 16 8 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 9 C -0.14 -1.81 9.57 37.16 0.36 -1.46 16 10 C 0.02 0.39 4.64 -3.71 -0.02 0.38 16 11 N -0.54 -9.99 4.75 -226.33 -1.07 -11.06 16 12 C 0.05 1.14 4.76 -3.82 -0.02 1.12 16 13 C -0.01 -0.20 4.23 -27.88 -0.12 -0.32 16 14 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 18 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H 0.05 0.59 6.94 -51.93 -0.36 0.23 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.42 6.17 -51.93 -0.32 1.10 16 27 H 0.09 1.26 6.88 -51.93 -0.36 0.90 16 28 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 1.05 6.65 -51.93 -0.35 0.70 16 33 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 34 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.07 1.39 6.39 -51.93 -0.33 1.06 16 36 H 0.02 0.58 6.35 -51.93 -0.33 0.25 16 37 H 0.01 0.41 6.66 -51.93 -0.35 0.06 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 292.54 15.07 4.41 4.41 Total: -1.00 -30.17 292.54 -7.77 -37.93 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.49 Total: -0.78 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 0.04 Total: -14.09 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.34 Total: -37.25 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.37 Total: -6.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.17 -7.77 -37.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224095.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.772 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds