Wall clock time and date at job start Sun Mar 29 2020 21:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47135 * 2 1 4 4 H 1.09003 * 109.54454 * 54.73247 * 3 2 1 5 5 C 1.53104 * 109.50734 * 294.62696 * 3 2 1 6 6 O 1.43016 * 109.25868 * 183.22091 * 5 3 2 7 7 C 1.43010 * 113.74321 * 58.66413 * 6 5 3 8 8 H 1.09002 * 109.54276 * 61.28770 * 7 6 5 9 9 C 1.53002 * 109.50901 * 181.39403 * 7 6 5 10 10 C 1.53090 * 109.26160 * 301.33341 * 7 6 5 11 11 N 1.47012 * 109.50800 * 174.84492 * 3 2 1 12 12 C 1.46906 * 110.99822 * 302.32500 * 11 3 2 13 13 C 1.52998 * 109.46811 * 304.13045 * 12 11 3 14 14 C 1.50703 * 109.47058 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99588 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00267 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99836 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00155 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47093 * 89.99969 * 18 16 14 20 20 H 1.48501 * 109.47433 * 210.00207 * 18 16 14 21 21 H 1.48500 * 109.46916 * 330.00090 * 18 16 14 22 22 H 1.08996 * 109.47603 * 65.68641 * 1 2 3 23 23 H 1.09002 * 109.47234 * 185.68494 * 1 2 3 24 24 H 1.09004 * 109.47240 * 305.68612 * 1 2 3 25 25 H 1.09004 * 109.47223 * 240.00083 * 2 1 3 26 26 H 1.08997 * 109.47017 * 119.99833 * 2 1 3 27 27 H 1.08997 * 109.50648 * 63.27901 * 5 3 2 28 28 H 1.09008 * 109.53391 * 303.17016 * 5 3 2 29 29 H 1.08997 * 109.47319 * 179.78736 * 9 7 6 30 30 H 1.09001 * 109.47253 * 299.78757 * 9 7 6 31 31 H 1.09000 * 109.46616 * 59.78489 * 9 7 6 32 32 H 1.09006 * 109.50631 * 296.91092 * 10 7 6 33 33 H 1.08997 * 109.51012 * 176.78124 * 10 7 6 34 34 H 1.09004 * 109.46951 * 184.13491 * 12 11 3 35 35 H 1.08993 * 109.47154 * 64.13134 * 12 11 3 36 36 H 1.09003 * 109.47445 * 60.00192 * 13 12 11 37 37 H 1.09001 * 109.47593 * 299.99917 * 13 12 11 38 38 H 0.97005 * 120.00024 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9840 0.8387 5 6 1.6434 2.1249 -1.3119 6 8 2.1866 3.4476 -1.3385 7 6 3.6112 3.4875 -1.2200 8 1 4.0619 2.9559 -2.0581 9 6 4.0838 4.9428 -1.2246 10 6 4.0277 2.8190 0.0927 11 7 3.5048 1.4453 0.1245 12 6 3.9307 0.7480 1.3454 13 6 3.2513 1.3845 2.5595 14 6 3.6886 0.6696 3.8120 15 1 4.3815 -0.1565 3.7483 16 6 3.2035 1.0693 5.0391 17 7 2.3593 2.0748 5.1166 18 14 3.7450 0.1827 6.5915 19 1 4.9610 0.8377 7.1371 20 1 2.6567 0.2409 7.6002 21 1 4.0480 -1.2354 6.2715 22 1 -0.3634 0.4231 -0.9364 23 1 -0.3634 -1.0226 0.1018 24 1 -0.3634 0.5995 0.8347 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5569 2.1761 -1.3816 28 1 2.0356 1.5534 -2.1532 29 1 5.1693 4.9726 -1.1305 30 1 3.7870 5.4182 -2.1595 31 1 3.6316 5.4741 -0.3872 32 1 3.6219 3.3825 0.9330 33 1 5.1153 2.7960 0.1605 34 1 5.0126 0.8281 1.4509 35 1 3.6488 -0.3029 1.2807 36 1 2.1693 1.3044 2.4540 37 1 3.5332 2.4354 2.6243 38 1 2.0177 2.3559 5.9799 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224095.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:16 Heat of formation + Delta-G solvation = -80.084400 kcal Electronic energy + Delta-G solvation = -16871.535510 eV Core-core repulsion = 14326.493583 eV Total energy + Delta-G solvation = -2545.041927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02827 -37.66667 -35.47106 -34.80985 -32.73644 -31.26228 -28.49218 -27.47180 -25.60686 -24.58310 -23.00114 -22.13733 -20.31519 -18.64446 -17.73382 -17.05119 -16.60907 -16.39162 -15.77464 -15.59301 -15.03577 -14.72160 -14.36989 -14.13232 -13.96670 -13.36852 -13.24682 -13.14936 -12.97125 -12.75927 -12.63103 -12.37862 -12.15405 -12.08049 -11.94725 -11.66988 -11.61648 -11.36055 -11.10579 -10.59386 -10.44369 -9.21242 -8.24174 -6.36996 1.36314 1.37666 1.49024 2.36419 2.79398 2.95092 3.08214 3.78833 3.91889 3.99993 4.14363 4.18230 4.31162 4.43384 4.48914 4.54183 4.60739 4.67850 4.76304 4.77898 4.81122 4.84400 4.97281 5.01711 5.09289 5.17101 5.26422 5.31125 5.36683 5.46458 5.54139 5.71062 5.95370 6.11107 6.26303 6.26960 6.80546 7.32719 8.86862 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.007707 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.490330 B = 3632.007623 C = 4189.533044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.045 3.955 4 H 0.016 0.984 5 C 0.075 3.925 6 O -0.403 6.403 7 C 0.091 3.909 8 H 0.079 0.921 9 C -0.140 4.140 10 C 0.021 3.979 11 N -0.527 5.527 12 C 0.068 3.932 13 C 0.007 3.993 14 C -0.542 4.542 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.260 1.260 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.012 0.988 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.073 0.927 36 H -0.006 1.006 37 H -0.019 1.019 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 -0.522 -13.718 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.064 4.064 4 H 0.034 0.966 5 C -0.002 4.002 6 O -0.322 6.322 7 C 0.034 3.966 8 H 0.097 0.903 9 C -0.197 4.197 10 C -0.108 4.108 11 N -0.251 5.251 12 C -0.059 4.059 13 C -0.031 4.031 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.184 1.184 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.012 0.988 37 H -0.001 1.001 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.515 -0.514 -14.042 14.061 hybrid contribution -0.125 0.104 2.231 2.237 sum 0.390 -0.410 -11.811 11.825 Atomic orbital electron populations 1.21759 0.94331 1.02386 1.01902 1.21484 0.96680 0.94185 1.02523 1.22373 0.88311 0.97973 0.97733 0.96614 1.22820 0.99502 0.82628 0.95236 1.87922 1.21736 1.28470 1.94118 1.22290 0.80935 0.97930 0.95470 0.90285 1.21759 1.02135 0.92855 1.02956 1.22857 1.00970 0.89324 0.97646 1.62710 1.09910 1.15230 1.37201 1.22128 0.98977 0.97982 0.86819 1.19451 0.95034 0.94504 0.94161 1.21609 1.27066 1.16738 0.92623 0.91901 1.26004 0.94909 0.95827 1.03031 1.70123 1.32737 1.28620 1.25851 0.85436 0.77940 0.79323 0.78300 1.19772 1.20803 1.18446 0.90536 0.91213 0.94748 0.89653 0.93288 0.87232 0.90839 0.89058 0.90256 0.93446 0.96948 0.89164 0.91775 0.90852 0.98780 1.00085 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.53 71.98 0.69 -3.21 16 2 C -0.11 -3.48 5.20 30.59 0.16 -3.32 16 3 C 0.05 1.61 1.48 44.93 0.07 1.68 16 4 H 0.02 0.71 6.38 -2.39 -0.02 0.70 16 5 C 0.07 2.18 5.97 72.02 0.43 2.61 16 6 O -0.40 -13.12 10.47 -148.98 -1.56 -14.68 16 7 C 0.09 2.66 3.43 30.63 0.10 2.76 16 8 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 9 C -0.14 -3.31 9.57 71.98 0.69 -2.62 16 10 C 0.02 0.73 4.64 86.31 0.40 1.13 16 11 N -0.53 -19.62 4.75 -869.98 -4.13 -23.75 16 12 C 0.07 2.94 4.76 86.30 0.41 3.35 16 13 C 0.01 0.36 4.23 29.85 0.13 0.49 16 14 C -0.54 -31.29 9.11 25.60 0.23 -31.05 16 15 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 18 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 22 H 0.08 1.63 6.94 -2.39 -0.02 1.61 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.05 1.81 6.17 -2.39 -0.01 1.79 16 27 H 0.11 2.78 6.88 -2.39 -0.02 2.76 16 28 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.01 0.53 6.65 -2.38 -0.02 0.52 16 33 H 0.09 2.93 8.11 -2.39 -0.02 2.91 16 34 H 0.06 2.69 8.08 -2.38 -0.02 2.67 16 35 H 0.07 3.06 6.39 -2.39 -0.02 3.05 16 36 H -0.01 -0.36 6.35 -2.39 -0.02 -0.37 16 37 H -0.02 -1.15 6.66 -2.39 -0.02 -1.17 16 38 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -67.06 292.54 1.40 -65.66 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.01 Total: 11.48 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.77 Total: -27.71 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -3.84 Total: -81.56 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.56 Total: -14.68 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.06 1.40 -65.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224095.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.426 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds