Wall clock time and date at job start Sun Mar 29 2020 21:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47437 * 2 1 4 4 H 1.08999 * 109.50666 * 304.53529 * 3 2 1 5 5 C 1.53104 * 109.50569 * 64.62648 * 3 2 1 6 6 O 1.43012 * 109.29097 * 176.75982 * 5 3 2 7 7 C 1.43017 * 113.74221 * 301.39484 * 6 5 3 8 8 H 1.08999 * 109.54465 * 178.57997 * 7 6 5 9 9 C 1.53004 * 109.46901 * 298.67043 * 7 6 5 10 10 C 1.53097 * 109.28975 * 58.60116 * 7 6 5 11 11 N 1.47014 * 109.26202 * 303.17654 * 10 7 6 12 12 C 1.46903 * 111.00272 * 182.39573 * 11 10 7 13 13 C 1.52999 * 109.47114 * 51.95455 * 12 11 10 14 14 C 1.50698 * 109.46867 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99987 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00201 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00423 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47336 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47191 * 120.00223 * 18 16 14 21 21 H 1.48498 * 109.47497 * 240.00251 * 18 16 14 22 22 H 1.08993 * 109.47565 * 184.21528 * 1 2 3 23 23 H 1.09003 * 109.46929 * 304.21917 * 1 2 3 24 24 H 1.09006 * 109.47049 * 64.21170 * 1 2 3 25 25 H 1.09000 * 109.47177 * 239.99633 * 2 1 3 26 26 H 1.09003 * 109.47119 * 120.00229 * 2 1 3 27 27 H 1.09004 * 109.49859 * 296.71509 * 5 3 2 28 28 H 1.08996 * 109.50932 * 56.80187 * 5 3 2 29 29 H 1.09002 * 109.47038 * 179.80200 * 9 7 6 30 30 H 1.08995 * 109.46912 * 299.79961 * 9 7 6 31 31 H 1.09000 * 109.47181 * 59.80343 * 9 7 6 32 32 H 1.09003 * 109.50754 * 183.23972 * 10 7 6 33 33 H 1.08997 * 109.50756 * 63.11460 * 10 7 6 34 34 H 1.08999 * 109.46685 * 171.95746 * 12 11 10 35 35 H 1.08999 * 109.46461 * 291.95081 * 12 11 10 36 36 H 1.09005 * 109.46957 * 300.00029 * 13 12 11 37 37 H 1.09003 * 109.47050 * 60.00451 * 13 12 11 38 38 H 0.97000 * 120.00030 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6122 1.9798 -0.8464 5 6 1.6274 2.1306 1.3040 6 8 2.1704 3.4533 1.3325 7 6 3.5963 3.4927 1.2305 8 1 3.9336 4.5292 1.2337 9 6 4.2132 2.7510 2.4180 10 6 4.0289 2.8184 -0.0741 11 7 3.5063 1.4446 -0.1064 12 6 3.9473 0.7419 -1.3188 13 6 5.4669 0.8595 -1.4523 14 6 5.9191 0.1392 -2.6963 15 1 5.1949 -0.3528 -3.3287 16 6 7.2570 0.1092 -3.0278 17 7 8.1387 0.7089 -2.2578 18 14 7.8177 -0.7842 -4.5694 19 1 6.6399 -1.3720 -5.2568 20 1 8.4936 0.1751 -5.4794 21 1 8.7652 -1.8656 -4.1979 22 1 -0.3634 -1.0248 0.0755 23 1 -0.3633 0.5779 0.8498 24 1 -0.3633 0.4471 -0.9254 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.5400 2.1821 1.3599 28 1 2.0090 1.5622 2.1521 29 1 5.3000 2.7780 2.3384 30 1 3.9049 3.2315 3.3464 31 1 3.8744 1.7150 2.4151 32 1 5.1173 2.7951 -0.1284 33 1 3.6336 3.3782 -0.9217 34 1 3.6687 -0.3097 -1.2507 35 1 3.4702 1.1884 -2.1912 36 1 5.7453 1.9112 -1.5203 37 1 5.9439 0.4130 -0.5798 38 1 9.0801 0.6876 -2.4908 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:18 Heat of formation + Delta-G solvation = -75.755668 kcal Electronic energy + Delta-G solvation = -16761.526509 eV Core-core repulsion = 14216.672290 eV Total energy + Delta-G solvation = -2544.854219 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.10622 -37.51063 -35.70847 -34.70431 -32.45174 -31.18244 -28.76024 -27.51086 -25.95913 -24.78101 -22.19725 -22.15626 -20.28136 -18.70114 -17.49131 -17.30642 -16.57972 -16.13594 -15.93950 -15.63759 -15.13718 -14.81640 -14.27158 -14.25126 -13.90281 -13.71513 -13.21145 -13.12455 -12.84913 -12.77153 -12.52369 -12.36429 -12.18743 -12.06362 -11.92392 -11.60466 -11.32152 -11.21057 -11.10958 -10.56239 -10.45414 -9.25405 -8.22711 -6.33747 1.38541 1.38738 1.51972 2.38007 2.81970 2.95873 3.10895 3.79442 3.89339 3.99570 4.07456 4.17792 4.25902 4.43725 4.45990 4.54369 4.54823 4.66671 4.71921 4.79451 4.85732 4.91089 4.95675 5.04113 5.11086 5.19712 5.27971 5.38322 5.41645 5.44975 5.61885 5.75386 6.01582 6.16069 6.25197 6.28808 6.82533 7.35365 8.89475 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031045 B = 0.006979 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.709318 B = 4011.322690 C = 4700.392885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.046 3.954 4 H 0.031 0.969 5 C 0.068 3.932 6 O -0.393 6.393 7 C 0.092 3.908 8 H 0.117 0.883 9 C -0.166 4.166 10 C 0.023 3.977 11 N -0.533 5.533 12 C 0.079 3.921 13 C 0.035 3.965 14 C -0.545 4.545 15 H 0.057 0.943 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.276 1.276 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.011 0.989 36 H -0.002 1.002 37 H -0.005 1.005 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 1.979 7.279 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.062 4.062 4 H 0.049 0.951 5 C -0.009 4.009 6 O -0.312 6.312 7 C 0.035 3.965 8 H 0.135 0.865 9 C -0.223 4.223 10 C -0.105 4.105 11 N -0.258 5.258 12 C -0.048 4.048 13 C -0.003 4.003 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.789 3.211 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.202 1.202 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.067 1.929 7.725 15.302 hybrid contribution 0.755 -0.154 -1.725 1.889 sum -12.312 1.775 6.001 13.811 Atomic orbital electron populations 1.21776 0.93349 1.02810 1.02337 1.21540 0.97196 0.94074 1.02533 1.22449 0.87390 0.98012 0.98383 0.95060 1.22878 0.99554 0.82992 0.95432 1.87967 1.20743 1.28275 1.94206 1.22334 0.80639 1.00438 0.93114 0.86510 1.22180 1.01144 1.01384 0.97629 1.22791 1.00976 0.89098 0.97633 1.62313 1.09569 1.15011 1.38945 1.22019 0.96546 0.97869 0.88410 1.18986 0.90736 0.95341 0.95204 1.21632 0.93081 1.34327 1.09329 0.92428 1.25928 0.96904 0.96303 1.00334 1.70103 1.02270 1.44853 1.39748 0.85401 0.78428 0.78325 0.78908 1.18717 1.20336 1.20188 0.91288 0.91093 0.92923 0.92761 0.91082 0.86315 0.91656 0.92068 0.90851 0.92068 0.90721 0.95871 0.91126 0.97097 0.98419 0.98638 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.76 71.98 0.70 -2.02 16 2 C -0.12 -2.98 5.24 30.59 0.16 -2.82 16 3 C 0.05 1.38 2.06 44.93 0.09 1.47 16 4 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 5 C 0.07 1.73 5.56 72.02 0.40 2.13 16 6 O -0.39 -11.50 10.64 -148.98 -1.59 -13.08 16 7 C 0.09 2.73 3.92 30.63 0.12 2.85 16 8 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 9 C -0.17 -4.54 8.89 71.98 0.64 -3.90 16 10 C 0.02 0.86 4.54 86.31 0.39 1.25 16 11 N -0.53 -19.75 4.02 -869.99 -3.49 -23.24 16 12 C 0.08 3.43 4.49 86.30 0.39 3.82 16 13 C 0.03 1.86 4.47 29.85 0.13 1.99 16 14 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.20 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 18 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.07 1.11 6.44 -2.39 -0.02 1.09 16 24 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.05 1.58 6.23 -2.39 -0.01 1.57 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.12 2.36 6.63 -2.38 -0.02 2.34 16 28 H 0.07 1.61 6.49 -2.39 -0.02 1.59 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.80 6.12 -2.39 -0.01 1.79 16 32 H 0.07 3.10 6.06 -2.39 -0.01 3.09 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 3.00 6.42 -2.39 -0.02 2.99 16 35 H 0.01 0.48 8.13 -2.39 -0.02 0.46 16 36 H 0.00 -0.14 6.27 -2.38 -0.01 -0.15 16 37 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -64.26 290.41 1.97 -62.29 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.01 Total: 9.72 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 3.72 Total: -25.79 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -3.21 Total: -79.67 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.59 Total: -13.08 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.26 1.97 -62.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.466 kcal (2) G-P(sol) polarization free energy of solvation -64.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds