Wall clock time and date at job start Sun Mar 29 2020 21:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 H 1.08999 * 109.47301 * 298.89338 * 3 2 1 5 5 C 1.50703 * 109.47232 * 58.89341 * 3 2 1 6 6 H 1.07999 * 119.99954 * 54.29432 * 5 3 2 7 7 C 1.37876 * 119.99988 * 234.29481 * 5 3 2 8 8 N 1.31513 * 120.00281 * 145.43371 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 325.42964 * 7 5 3 10 10 H 1.48502 * 109.46884 * 84.19745 * 9 7 5 11 11 H 1.48502 * 109.47293 * 204.19304 * 9 7 5 12 12 H 1.48499 * 109.47142 * 324.19701 * 9 7 5 13 13 N 1.46892 * 109.46929 * 178.89313 * 3 2 1 14 14 C 1.46850 * 111.00428 * 302.88233 * 13 3 2 15 15 C 1.53030 * 109.52724 * 185.83819 * 14 13 3 16 16 C 1.53113 * 109.31545 * 300.80374 * 15 14 13 17 17 C 1.53204 * 109.11890 * 57.63367 * 16 15 14 18 18 C 1.46847 * 111.00160 * 67.09567 * 13 3 2 19 19 H 1.09005 * 109.46055 * 294.16317 * 18 13 3 20 20 C 1.52994 * 109.46292 * 54.14276 * 18 13 3 21 21 O 1.42897 * 109.47217 * 65.00367 * 20 18 13 22 22 H 1.08998 * 109.47202 * 177.80897 * 1 2 3 23 23 H 1.09000 * 109.47440 * 297.81215 * 1 2 3 24 24 H 1.08999 * 109.46833 * 57.80908 * 1 2 3 25 25 H 1.08997 * 109.47246 * 239.99476 * 2 1 3 26 26 H 1.09007 * 109.46468 * 119.99555 * 2 1 3 27 27 H 0.97001 * 120.00138 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.45998 * 65.82019 * 14 13 3 29 29 H 1.09000 * 109.45441 * 305.85740 * 14 13 3 30 30 H 1.09001 * 109.50131 * 60.76421 * 15 14 13 31 31 H 1.08999 * 109.50500 * 180.84064 * 15 14 13 32 32 H 1.08993 * 109.52696 * 177.57976 * 16 15 14 33 33 H 1.09002 * 109.52306 * 297.77193 * 16 15 14 34 34 H 1.08991 * 109.49951 * 182.42747 * 17 16 15 35 35 H 1.09001 * 109.52371 * 62.33953 * 17 16 15 36 36 H 1.09007 * 109.47138 * 185.00399 * 20 18 13 37 37 H 1.08994 * 109.47321 * 304.99948 * 20 18 13 38 38 H 0.96698 * 114.00461 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6930 1.9506 -0.8997 5 6 1.5154 2.1608 1.2165 6 1 1.6804 1.7476 2.2006 7 6 0.8249 3.3456 1.0732 8 7 -0.1648 3.6329 1.8902 9 14 1.2952 4.5427 -0.2816 10 1 0.6271 4.1455 -1.5469 11 1 0.8644 5.9126 0.0968 12 1 2.7678 4.5216 -0.4715 13 7 3.5087 1.4426 0.0268 14 6 4.0140 0.7057 1.1922 15 6 5.5356 0.8492 1.2678 16 6 6.1607 0.2985 -0.0169 17 6 5.5810 1.0503 -1.2193 18 6 4.0579 0.9009 -1.2228 19 1 3.7968 -0.1541 -1.3070 20 6 3.4732 1.6672 -2.4110 21 8 3.9115 3.0265 -2.3633 22 1 -0.3633 -1.0269 -0.0393 23 1 -0.3634 0.4795 0.9089 24 1 -0.3633 0.5475 -0.8697 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 -0.6508 4.4662 1.7891 28 1 3.7528 -0.3483 1.0966 29 1 3.5654 1.1100 2.0997 30 1 5.7969 1.9018 1.3773 31 1 5.9118 0.2899 2.1243 32 1 7.2412 0.4381 0.0148 33 1 5.9322 -0.7635 -0.1069 34 1 5.9895 0.6340 -2.1400 35 1 5.8429 2.1060 -1.1496 36 1 3.8110 1.2089 -3.3406 37 1 2.3848 1.6345 -2.3644 38 1 3.5780 3.5729 -3.0881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042432219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:20 Heat of formation + Delta-G solvation = -52.253344 kcal Electronic energy + Delta-G solvation = -17554.476285 eV Core-core repulsion = 15010.641204 eV Total energy + Delta-G solvation = -2543.835082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.04518 -35.85867 -34.70245 -32.04177 -30.97455 -30.56031 -26.83113 -25.57554 -23.71890 -22.44881 -20.93971 -19.90146 -18.22618 -17.00407 -16.65026 -15.32591 -14.69403 -14.22029 -13.88159 -13.64121 -13.37677 -13.06943 -12.86845 -12.53134 -12.46733 -12.11326 -11.57369 -11.04858 -10.91661 -10.85793 -10.68112 -10.63905 -10.28282 -10.18814 -10.00745 -9.86903 -9.64460 -9.47283 -9.33948 -8.92583 -8.02594 -6.99036 -6.15251 -3.91486 3.39658 3.52891 3.83285 4.60167 4.73246 4.85298 5.22684 5.27319 5.35909 5.46820 5.69455 5.79606 5.83959 5.95154 6.05095 6.11477 6.15551 6.16924 6.26292 6.36993 6.38172 6.47009 6.54012 6.70891 6.73814 6.75639 6.89702 6.96993 7.08527 7.27708 7.40546 7.79875 8.08005 8.19320 8.41419 8.71422 9.03885 9.63831 10.96034 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.012391 C = 0.010954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.075807 B = 2259.225025 C = 2555.644011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.142 4.142 3 C 0.184 3.816 4 H 0.049 0.951 5 C -0.510 4.510 6 H 0.068 0.932 7 C 0.093 3.907 8 N -0.868 5.868 9 Si 0.848 3.152 10 H -0.288 1.288 11 H -0.300 1.300 12 H -0.235 1.235 13 N -0.513 5.513 14 C 0.064 3.936 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.104 4.104 18 C 0.078 3.922 19 H 0.038 0.962 20 C 0.080 3.920 21 O -0.548 6.548 22 H 0.025 0.975 23 H 0.077 0.923 24 H 0.037 0.963 25 H 0.025 0.975 26 H 0.051 0.949 27 H 0.262 0.738 28 H 0.017 0.983 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.049 0.951 38 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -5.569 -7.188 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.182 4.182 3 C 0.078 3.922 4 H 0.067 0.933 5 C -0.547 4.547 6 H 0.086 0.914 7 C -0.113 4.113 8 N -0.503 5.503 9 Si 0.674 3.326 10 H -0.215 1.215 11 H -0.227 1.227 12 H -0.157 1.157 13 N -0.237 5.237 14 C -0.064 4.064 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.142 4.142 18 C -0.031 4.031 19 H 0.056 0.944 20 C 0.001 3.999 21 O -0.350 6.350 22 H 0.044 0.956 23 H 0.096 0.904 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 8.163 -5.173 -6.530 11.663 hybrid contribution -0.463 0.035 -1.337 1.415 sum 7.700 -5.138 -7.867 12.148 Atomic orbital electron populations 1.21545 0.95966 0.98319 1.03010 1.22152 0.96750 1.00731 0.98522 1.19878 0.82474 0.91462 0.98370 0.93324 1.20458 1.34185 1.07470 0.92615 0.91373 1.24919 0.92710 0.97977 0.95676 1.70218 1.15952 1.23767 1.40319 0.87369 0.82760 0.80126 0.82307 1.21473 1.22692 1.15743 1.62883 1.10282 1.51731 0.98820 1.21901 0.93285 0.94922 0.96310 1.21616 0.96437 1.01366 0.96107 1.21572 0.98937 0.98979 0.96010 1.21496 0.94589 1.01683 0.96454 1.21653 0.94766 0.94823 0.91858 0.94425 1.22311 0.98117 0.83065 0.96370 1.86689 1.75140 1.20825 1.52377 0.95600 0.90443 0.94387 0.95590 0.93078 0.92807 0.96520 0.89726 0.91421 0.92865 0.92850 0.93122 0.93299 0.90440 0.94856 0.93320 0.79264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.61 37.16 0.36 -2.34 16 2 C -0.14 -2.95 4.77 -26.73 -0.13 -3.08 16 3 C 0.18 4.25 1.33 -68.87 -0.09 4.16 16 4 H 0.05 1.18 3.75 -51.93 -0.19 0.99 16 5 C -0.51 -13.81 6.70 -34.44 -0.23 -14.04 16 6 H 0.07 2.00 7.12 -52.49 -0.37 1.63 16 7 C 0.09 2.63 5.42 -17.82 -0.10 2.53 16 8 N -0.87 -25.68 13.96 55.43 0.77 -24.91 16 9 Si 0.85 21.50 27.42 -169.99 -4.66 16.84 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 12 H -0.23 -6.03 6.89 56.52 0.39 -5.64 16 13 N -0.51 -10.91 4.40 -220.14 -0.97 -11.88 16 14 C 0.06 1.26 4.63 -3.84 -0.02 1.24 16 15 C -0.12 -1.95 6.09 -26.66 -0.16 -2.11 16 16 C -0.12 -1.75 6.01 -26.57 -0.16 -1.91 16 17 C -0.10 -1.69 5.19 -26.60 -0.14 -1.83 16 18 C 0.08 1.41 1.85 -67.72 -0.12 1.29 16 19 H 0.04 0.67 6.81 -51.93 -0.35 0.32 16 20 C 0.08 1.37 6.32 37.15 0.23 1.60 16 21 O -0.55 -9.91 12.50 -35.23 -0.44 -10.35 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.08 1.82 7.27 -51.93 -0.38 1.44 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.49 6.77 -51.93 -0.35 0.14 16 26 H 0.05 1.07 6.43 -51.92 -0.33 0.74 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.32 6.57 -51.93 -0.34 -0.02 16 29 H 0.08 1.85 6.45 -51.93 -0.34 1.52 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.40 7.54 -51.93 -0.39 1.01 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.90 5.89 -51.93 -0.31 0.60 16 38 H 0.36 4.98 9.12 45.56 0.42 5.39 16 LS Contribution 284.44 15.07 4.29 4.29 Total: -1.00 -29.97 284.44 -7.04 -37.01 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.47 Total: 3.49 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -0.56 Total: -14.49 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.20 Total: -36.79 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.44 Total: -10.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.66 Total: 16.84 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.97 -7.04 -37.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042432219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.244 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds