Wall clock time and date at job start Sun Mar 29 2020 21:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 H 1.08999 * 109.47301 * 298.89338 * 3 2 1 5 5 C 1.50703 * 109.47232 * 58.89341 * 3 2 1 6 6 H 1.07999 * 119.99954 * 54.29432 * 5 3 2 7 7 C 1.37876 * 119.99988 * 234.29481 * 5 3 2 8 8 N 1.31513 * 120.00281 * 145.43371 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 325.42964 * 7 5 3 10 10 H 1.48502 * 109.46884 * 84.19745 * 9 7 5 11 11 H 1.48502 * 109.47293 * 204.19304 * 9 7 5 12 12 H 1.48499 * 109.47142 * 324.19701 * 9 7 5 13 13 N 1.46892 * 109.46929 * 178.89313 * 3 2 1 14 14 C 1.46850 * 111.00428 * 302.88233 * 13 3 2 15 15 C 1.53030 * 109.52724 * 185.83819 * 14 13 3 16 16 C 1.53113 * 109.31545 * 300.80374 * 15 14 13 17 17 C 1.53204 * 109.11890 * 57.63367 * 16 15 14 18 18 C 1.46847 * 111.00160 * 67.09567 * 13 3 2 19 19 H 1.09005 * 109.46055 * 294.16317 * 18 13 3 20 20 C 1.52994 * 109.46292 * 54.14276 * 18 13 3 21 21 O 1.42897 * 109.47217 * 65.00367 * 20 18 13 22 22 H 1.08998 * 109.47202 * 177.80897 * 1 2 3 23 23 H 1.09000 * 109.47440 * 297.81215 * 1 2 3 24 24 H 1.08999 * 109.46833 * 57.80908 * 1 2 3 25 25 H 1.08997 * 109.47246 * 239.99476 * 2 1 3 26 26 H 1.09007 * 109.46468 * 119.99555 * 2 1 3 27 27 H 0.97001 * 120.00138 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.45998 * 65.82019 * 14 13 3 29 29 H 1.09000 * 109.45441 * 305.85740 * 14 13 3 30 30 H 1.09001 * 109.50131 * 60.76421 * 15 14 13 31 31 H 1.08999 * 109.50500 * 180.84064 * 15 14 13 32 32 H 1.08993 * 109.52696 * 177.57976 * 16 15 14 33 33 H 1.09002 * 109.52306 * 297.77193 * 16 15 14 34 34 H 1.08991 * 109.49951 * 182.42747 * 17 16 15 35 35 H 1.09001 * 109.52371 * 62.33953 * 17 16 15 36 36 H 1.09007 * 109.47138 * 185.00399 * 20 18 13 37 37 H 1.08994 * 109.47321 * 304.99948 * 20 18 13 38 38 H 0.96698 * 114.00461 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6930 1.9506 -0.8997 5 6 1.5154 2.1608 1.2165 6 1 1.6804 1.7476 2.2006 7 6 0.8249 3.3456 1.0732 8 7 -0.1648 3.6329 1.8902 9 14 1.2952 4.5427 -0.2816 10 1 0.6271 4.1455 -1.5469 11 1 0.8644 5.9126 0.0968 12 1 2.7678 4.5216 -0.4715 13 7 3.5087 1.4426 0.0268 14 6 4.0140 0.7057 1.1922 15 6 5.5356 0.8492 1.2678 16 6 6.1607 0.2985 -0.0169 17 6 5.5810 1.0503 -1.2193 18 6 4.0579 0.9009 -1.2228 19 1 3.7968 -0.1541 -1.3070 20 6 3.4732 1.6672 -2.4110 21 8 3.9115 3.0265 -2.3633 22 1 -0.3633 -1.0269 -0.0393 23 1 -0.3634 0.4795 0.9089 24 1 -0.3633 0.5475 -0.8697 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 -0.6508 4.4662 1.7891 28 1 3.7528 -0.3483 1.0966 29 1 3.5654 1.1100 2.0997 30 1 5.7969 1.9018 1.3773 31 1 5.9118 0.2899 2.1243 32 1 7.2412 0.4381 0.0148 33 1 5.9322 -0.7635 -0.1069 34 1 5.9895 0.6340 -2.1400 35 1 5.8429 2.1060 -1.1496 36 1 3.8110 1.2089 -3.3406 37 1 2.3848 1.6345 -2.3644 38 1 3.5780 3.5729 -3.0881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042432219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:19 Heat of formation + Delta-G solvation = -74.607266 kcal Electronic energy + Delta-G solvation = -17555.445624 eV Core-core repulsion = 15010.641204 eV Total energy + Delta-G solvation = -2544.804421 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55105 -37.24116 -36.30569 -34.08730 -32.44419 -32.06802 -28.67788 -27.00642 -25.43077 -24.05532 -22.37483 -21.44879 -19.80480 -18.89507 -18.10410 -16.84383 -16.41595 -16.04960 -15.32040 -15.21349 -14.86979 -14.58837 -14.54774 -14.19620 -13.93016 -13.52655 -13.39403 -12.74033 -12.64092 -12.44739 -12.32812 -12.22977 -11.93279 -11.85981 -11.66411 -11.49430 -11.26017 -11.02272 -10.93332 -10.47924 -10.15200 -8.61057 -8.33081 -6.09447 1.34783 1.45352 1.76947 2.47803 2.94365 3.43582 3.60286 4.00454 4.03877 4.16040 4.26956 4.40721 4.44534 4.52547 4.57203 4.60227 4.69359 4.75815 4.80897 4.95634 5.01634 5.07370 5.11136 5.15906 5.20466 5.32848 5.38482 5.42761 5.53240 5.60774 5.68376 5.81140 6.22773 6.71768 6.79020 6.93431 7.03817 7.45839 8.82275 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.012391 C = 0.010954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.075807 B = 2259.225025 C = 2555.644011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C 0.190 3.810 4 H 0.042 0.958 5 C -0.504 4.504 6 H 0.030 0.970 7 C 0.041 3.959 8 N -0.914 5.914 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.306 1.306 12 H -0.239 1.239 13 N -0.532 5.532 14 C 0.066 3.934 15 C -0.113 4.113 16 C -0.112 4.112 17 C -0.099 4.099 18 C 0.072 3.928 19 H 0.049 0.951 20 C 0.078 3.922 21 O -0.570 6.570 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 -6.888 -9.571 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.176 4.176 3 C 0.083 3.917 4 H 0.060 0.940 5 C -0.541 4.541 6 H 0.048 0.952 7 C -0.160 4.160 8 N -0.551 5.551 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.233 1.233 12 H -0.162 1.162 13 N -0.257 5.257 14 C -0.062 4.062 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.137 4.137 18 C -0.037 4.037 19 H 0.066 0.934 20 C 0.000 4.000 21 O -0.376 6.376 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 9.941 -6.494 -8.936 14.861 hybrid contribution -0.983 0.372 -0.550 1.187 sum 8.958 -6.122 -9.486 14.412 Atomic orbital electron populations 1.21460 0.95960 0.99908 1.01007 1.22049 0.96702 0.99328 0.99505 1.19670 0.84055 0.92171 0.95764 0.93963 1.20642 1.33540 1.07280 0.92672 0.95221 1.25587 0.92803 0.99540 0.98107 1.70312 1.17504 1.24384 1.42900 0.86331 0.81835 0.77671 0.80280 1.20013 1.23328 1.16228 1.62582 1.08897 1.53333 1.00884 1.21852 0.95328 0.94697 0.94353 1.21576 0.94096 1.00913 0.98494 1.21556 1.00065 0.99336 0.93966 1.21460 0.93057 1.00783 0.98395 1.21838 0.96181 0.95340 0.90312 0.93371 1.22366 0.97119 0.83010 0.97539 1.86636 1.75478 1.21633 1.53861 0.92402 0.94327 0.94261 0.92740 0.93674 0.92838 0.95803 0.93440 0.93142 0.90807 0.90509 0.91716 0.90437 0.92602 0.91068 0.94972 0.77234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.61 71.98 0.69 -4.40 16 2 C -0.14 -5.51 4.77 30.60 0.15 -5.36 16 3 C 0.19 8.73 1.33 44.17 0.06 8.79 16 4 H 0.04 2.01 3.75 -2.39 -0.01 2.00 16 5 C -0.50 -28.20 6.70 25.60 0.17 -28.03 16 6 H 0.03 1.85 7.12 -2.91 -0.02 1.83 16 7 C 0.04 2.38 5.42 84.65 0.46 2.84 16 8 N -0.91 -56.15 13.96 21.45 0.30 -55.85 16 9 Si 0.91 45.52 27.42 68.60 1.88 47.40 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 12 H -0.24 -11.99 6.89 99.48 0.69 -11.31 16 13 N -0.53 -22.13 4.40 -850.40 -3.74 -25.87 16 14 C 0.07 2.56 4.63 86.32 0.40 2.96 16 15 C -0.11 -3.55 6.09 30.64 0.19 -3.37 16 16 C -0.11 -2.90 6.01 30.70 0.18 -2.71 16 17 C -0.10 -2.84 5.19 30.68 0.16 -2.69 16 18 C 0.07 2.39 1.85 44.94 0.08 2.47 16 19 H 0.05 1.52 6.81 -2.38 -0.02 1.50 16 20 C 0.08 2.41 6.32 71.98 0.45 2.87 16 21 O -0.57 -19.15 12.50 -148.98 -1.86 -21.01 16 22 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.04 1.84 7.27 -2.39 -0.02 1.82 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.91 6.77 -2.39 -0.02 1.89 16 26 H 0.04 1.86 6.43 -2.38 -0.02 1.85 16 27 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.02 0.88 6.57 -2.38 -0.02 0.87 16 29 H 0.05 2.16 6.45 -2.39 -0.02 2.15 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.87 7.54 -2.39 -0.02 1.85 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.03 1.10 5.89 -2.39 -0.01 1.09 16 38 H 0.38 9.39 9.12 -74.06 -0.68 8.72 16 Total: -1.00 -66.24 284.44 -0.09 -66.33 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.34 Total: 15.63 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 2.99 Total: -26.64 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -3.44 Total: -81.72 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -1.86 Total: -21.01 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -66.24 -0.09 -66.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042432219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.278 kcal (2) G-P(sol) polarization free energy of solvation -66.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds