Wall clock time and date at job start Sun Mar 29 2020 21:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47040 * 2 1 4 4 H 1.08997 * 109.47467 * 39.62670 * 3 2 1 5 5 C 1.50699 * 109.47432 * 159.62839 * 3 2 1 6 6 H 1.08002 * 120.00176 * 88.73674 * 5 3 2 7 7 C 1.37878 * 120.00001 * 268.74197 * 5 3 2 8 8 N 1.31513 * 119.99964 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00263 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47343 * 89.99611 * 9 7 5 11 11 H 1.48503 * 109.47443 * 210.00149 * 9 7 5 12 12 H 1.48505 * 109.46899 * 330.00070 * 9 7 5 13 13 N 1.46910 * 109.46907 * 279.62463 * 3 2 1 14 14 C 1.47005 * 110.99569 * 38.53572 * 13 3 2 15 15 C 1.53108 * 109.25500 * 182.39136 * 14 13 3 16 16 O 1.43012 * 109.25524 * 303.15288 * 15 14 13 17 17 C 1.43108 * 113.76697 * 58.67279 * 16 15 14 18 18 C 1.47008 * 110.99849 * 162.17103 * 13 3 2 19 19 C 1.52997 * 109.50818 * 297.54373 * 18 13 3 20 20 C 1.53007 * 109.50709 * 57.63064 * 18 13 3 21 21 H 1.08999 * 109.47046 * 310.95621 * 1 2 3 22 22 H 1.09002 * 109.46637 * 70.95441 * 1 2 3 23 23 H 1.09000 * 109.46911 * 190.95587 * 1 2 3 24 24 H 1.09001 * 109.47283 * 239.99907 * 2 1 3 25 25 H 1.08998 * 109.47719 * 119.99521 * 2 1 3 26 26 H 0.96996 * 120.00448 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.51077 * 302.32414 * 14 13 3 28 28 H 1.09000 * 109.51288 * 62.41678 * 14 13 3 29 29 H 1.08997 * 109.50724 * 63.08959 * 15 14 13 30 30 H 1.08997 * 109.50486 * 183.17679 * 15 14 13 31 31 H 1.08991 * 109.57021 * 181.41459 * 17 16 15 32 32 H 1.09001 * 109.49518 * 61.24801 * 17 16 15 33 33 H 1.09000 * 109.47402 * 180.08958 * 19 18 13 34 34 H 1.09001 * 109.47231 * 60.08555 * 19 18 13 35 35 H 1.09000 * 109.47564 * 300.08735 * 19 18 13 36 36 H 1.09001 * 109.46869 * 292.13566 * 20 18 13 37 37 H 1.08999 * 109.47017 * 52.13496 * 20 18 13 38 38 H 1.09003 * 109.46919 * 172.13243 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4149 2.0490 0.6554 5 6 3.4632 1.4723 0.4946 6 1 4.2797 1.3540 -0.2024 7 6 3.7230 1.6504 1.8369 8 7 2.7288 1.7949 2.6856 9 14 5.4870 1.6866 2.4501 10 1 5.9927 3.0825 2.4212 11 1 5.5382 1.1703 3.8416 12 1 6.3328 0.8355 1.5750 13 7 1.9849 1.9814 -1.3656 14 6 0.7765 1.5212 -2.0650 15 6 0.7891 2.0558 -3.4997 16 8 0.8878 3.4822 -3.4706 17 6 2.0541 3.9660 -2.7970 18 6 2.0537 3.4498 -1.3557 19 6 0.8413 4.0131 -0.6117 20 6 3.3373 3.8964 -0.6528 21 1 -0.3633 0.6736 0.7761 22 1 -0.3633 0.3354 -0.9715 23 1 -0.3633 -1.0089 0.1953 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 2.9114 1.9199 3.6299 27 1 0.7589 0.4315 -2.0829 28 1 -0.1077 1.8910 -1.5459 29 1 1.6441 1.6426 -4.0346 30 1 -0.1318 1.7643 -4.0048 31 1 2.0479 5.0559 -2.7933 32 1 2.9460 3.6082 -3.3115 33 1 0.8921 5.1019 -0.6060 34 1 0.8408 3.6441 0.4140 35 1 -0.0728 3.6947 -1.1128 36 1 3.2765 3.6481 0.4069 37 1 4.1915 3.3855 -1.0972 38 1 3.4583 4.9736 -0.7673 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042462059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:20 Heat of formation + Delta-G solvation = -28.056555 kcal Electronic energy + Delta-G solvation = -17821.114219 eV Core-core repulsion = 15278.328389 eV Total energy + Delta-G solvation = -2542.785830 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69915 -36.22215 -33.68216 -32.55887 -30.47884 -28.34783 -26.76231 -26.41483 -24.66040 -22.84108 -21.77898 -19.88216 -17.87031 -16.40450 -15.94483 -15.60744 -14.73570 -14.57547 -14.48000 -13.69750 -13.31074 -12.99356 -12.50789 -12.11192 -11.69650 -11.50592 -11.42069 -11.16559 -11.07907 -10.85809 -10.77693 -10.66419 -10.58908 -10.31756 -10.09290 -9.98543 -9.65720 -9.28105 -9.01023 -8.74208 -8.34662 -7.08966 -6.00496 -3.98471 3.29340 3.37257 3.40795 4.32859 4.41044 4.84650 5.30977 5.48120 5.59077 5.65036 5.74449 5.81407 6.00783 6.07262 6.10790 6.14328 6.18441 6.28494 6.33898 6.41192 6.48978 6.66504 6.68782 6.76144 6.81552 7.03234 7.09978 7.12085 7.31354 7.55335 7.63359 7.70372 7.89298 8.21275 8.26808 8.61492 9.08874 9.59506 11.06055 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.011265 C = 0.009391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.510809 B = 2485.083584 C = 2980.902769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.110 4.110 3 C 0.198 3.802 4 H 0.045 0.955 5 C -0.482 4.482 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.520 5.520 14 C 0.005 3.995 15 C 0.061 3.939 16 O -0.393 6.393 17 C 0.074 3.926 18 C 0.087 3.913 19 C -0.173 4.173 20 C -0.129 4.129 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.260 0.740 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 1.532 -7.435 8.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.148 4.148 3 C 0.093 3.907 4 H 0.062 0.938 5 C -0.522 4.522 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.246 5.246 14 C -0.123 4.123 15 C -0.016 4.016 16 O -0.312 6.312 17 C -0.003 4.003 18 C -0.003 4.003 19 C -0.231 4.231 20 C -0.186 4.186 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.807 1.492 -7.568 8.209 hybrid contribution 0.409 0.081 1.090 1.167 sum -2.399 1.572 -6.478 7.084 Atomic orbital electron populations 1.22527 0.98843 0.99937 1.01705 1.21742 0.92351 1.00205 1.00519 1.19645 0.97269 0.90706 0.83107 0.93777 1.21022 0.91879 1.47397 0.91854 0.92181 1.24920 0.96699 0.95698 0.97019 1.69931 1.30444 1.50202 1.02876 0.86674 0.85539 0.78294 0.78027 1.20685 1.21462 1.19874 1.62796 1.34411 1.06170 1.21268 1.23258 0.93858 1.00904 0.94284 1.22710 1.00860 0.81194 0.96836 1.87875 1.44770 1.21223 1.77305 1.22765 0.87583 0.98062 0.91906 1.21408 0.95945 0.89156 0.93839 1.22365 0.98743 1.00088 1.01950 1.21978 0.95684 0.96628 1.04314 0.93328 0.92092 0.94818 0.93768 0.91895 0.93037 0.89364 0.94289 0.93129 0.89861 0.89733 0.93037 0.93557 0.91175 0.93174 0.88592 0.92388 0.95615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 8.98 37.16 0.33 -2.94 16 2 C -0.11 -2.40 4.99 -26.73 -0.13 -2.54 16 3 C 0.20 4.65 1.49 -68.86 -0.10 4.55 16 4 H 0.04 1.16 4.64 -51.93 -0.24 0.92 16 5 C -0.48 -12.41 5.18 -34.44 -0.18 -12.59 16 6 H 0.06 1.60 7.46 -52.49 -0.39 1.21 16 7 C 0.06 1.52 4.79 -17.82 -0.09 1.43 16 8 N -0.90 -24.71 12.85 55.43 0.71 -24.00 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.52 -10.83 4.41 -212.17 -0.94 -11.77 16 14 C 0.01 0.09 3.32 -3.71 -0.01 0.08 16 15 C 0.06 0.98 7.01 37.21 0.26 1.24 16 16 O -0.39 -6.91 10.28 -35.23 -0.36 -7.28 16 17 C 0.07 1.28 5.70 37.21 0.21 1.49 16 18 C 0.09 1.70 0.68 -131.49 -0.09 1.61 16 19 C -0.17 -3.35 7.72 37.16 0.29 -3.07 16 20 C -0.13 -2.64 7.10 37.16 0.26 -2.38 16 21 H 0.05 0.98 7.89 -51.93 -0.41 0.57 16 22 H 0.06 1.04 4.11 -51.93 -0.21 0.83 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.93 7.21 -51.93 -0.37 0.56 16 25 H 0.06 1.52 7.97 -51.93 -0.41 1.11 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.09 1.54 4.93 -51.93 -0.26 1.29 16 28 H 0.04 0.73 5.11 -51.93 -0.27 0.47 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.54 6.15 -51.93 -0.32 1.23 16 35 H 0.05 0.95 6.06 -51.93 -0.31 0.63 16 36 H 0.10 2.29 5.51 -51.93 -0.29 2.01 16 37 H 0.06 1.21 7.56 -51.93 -0.39 0.82 16 38 H 0.02 0.45 8.13 -51.93 -0.42 0.03 16 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -26.89 275.26 -6.68 -33.56 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.97 Total: 2.68 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 0.76 Total: -13.10 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.22 Total: -35.77 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.36 Total: -7.28 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.89 -6.68 -33.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042462059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.507 kcal (2) G-P(sol) polarization free energy of solvation -26.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds