Wall clock time and date at job start Sun Mar 29 2020 21:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47040 * 2 1 4 4 H 1.08997 * 109.47467 * 39.62670 * 3 2 1 5 5 C 1.50699 * 109.47432 * 159.62839 * 3 2 1 6 6 H 1.08002 * 120.00176 * 88.73674 * 5 3 2 7 7 C 1.37878 * 120.00001 * 268.74197 * 5 3 2 8 8 N 1.31513 * 119.99964 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00263 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47343 * 89.99611 * 9 7 5 11 11 H 1.48503 * 109.47443 * 210.00149 * 9 7 5 12 12 H 1.48505 * 109.46899 * 330.00070 * 9 7 5 13 13 N 1.46910 * 109.46907 * 279.62463 * 3 2 1 14 14 C 1.47005 * 110.99569 * 38.53572 * 13 3 2 15 15 C 1.53108 * 109.25500 * 182.39136 * 14 13 3 16 16 O 1.43012 * 109.25524 * 303.15288 * 15 14 13 17 17 C 1.43108 * 113.76697 * 58.67279 * 16 15 14 18 18 C 1.47008 * 110.99849 * 162.17103 * 13 3 2 19 19 C 1.52997 * 109.50818 * 297.54373 * 18 13 3 20 20 C 1.53007 * 109.50709 * 57.63064 * 18 13 3 21 21 H 1.08999 * 109.47046 * 310.95621 * 1 2 3 22 22 H 1.09002 * 109.46637 * 70.95441 * 1 2 3 23 23 H 1.09000 * 109.46911 * 190.95587 * 1 2 3 24 24 H 1.09001 * 109.47283 * 239.99907 * 2 1 3 25 25 H 1.08998 * 109.47719 * 119.99521 * 2 1 3 26 26 H 0.96996 * 120.00448 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.51077 * 302.32414 * 14 13 3 28 28 H 1.09000 * 109.51288 * 62.41678 * 14 13 3 29 29 H 1.08997 * 109.50724 * 63.08959 * 15 14 13 30 30 H 1.08997 * 109.50486 * 183.17679 * 15 14 13 31 31 H 1.08991 * 109.57021 * 181.41459 * 17 16 15 32 32 H 1.09001 * 109.49518 * 61.24801 * 17 16 15 33 33 H 1.09000 * 109.47402 * 180.08958 * 19 18 13 34 34 H 1.09001 * 109.47231 * 60.08555 * 19 18 13 35 35 H 1.09000 * 109.47564 * 300.08735 * 19 18 13 36 36 H 1.09001 * 109.46869 * 292.13566 * 20 18 13 37 37 H 1.08999 * 109.47017 * 52.13496 * 20 18 13 38 38 H 1.09003 * 109.46919 * 172.13243 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4149 2.0490 0.6554 5 6 3.4632 1.4723 0.4946 6 1 4.2797 1.3540 -0.2024 7 6 3.7230 1.6504 1.8369 8 7 2.7288 1.7949 2.6856 9 14 5.4870 1.6866 2.4501 10 1 5.9927 3.0825 2.4212 11 1 5.5382 1.1703 3.8416 12 1 6.3328 0.8355 1.5750 13 7 1.9849 1.9814 -1.3656 14 6 0.7765 1.5212 -2.0650 15 6 0.7891 2.0558 -3.4997 16 8 0.8878 3.4822 -3.4706 17 6 2.0541 3.9660 -2.7970 18 6 2.0537 3.4498 -1.3557 19 6 0.8413 4.0131 -0.6117 20 6 3.3373 3.8964 -0.6528 21 1 -0.3633 0.6736 0.7761 22 1 -0.3633 0.3354 -0.9715 23 1 -0.3633 -1.0089 0.1953 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 2.9114 1.9199 3.6299 27 1 0.7589 0.4315 -2.0829 28 1 -0.1077 1.8910 -1.5459 29 1 1.6441 1.6426 -4.0346 30 1 -0.1318 1.7643 -4.0048 31 1 2.0479 5.0559 -2.7933 32 1 2.9460 3.6082 -3.3115 33 1 0.8921 5.1019 -0.6060 34 1 0.8408 3.6441 0.4140 35 1 -0.0728 3.6947 -1.1128 36 1 3.2765 3.6481 0.4069 37 1 4.1915 3.3855 -1.0972 38 1 3.4583 4.9736 -0.7673 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042462059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:20 Heat of formation + Delta-G solvation = -45.644038 kcal Electronic energy + Delta-G solvation = -17821.876869 eV Core-core repulsion = 15278.328389 eV Total energy + Delta-G solvation = -2543.548481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.21992 -37.76233 -35.25832 -34.48426 -32.06400 -30.05038 -28.37385 -27.98134 -26.30684 -24.57836 -23.24805 -21.62829 -19.42350 -18.38713 -17.51074 -17.01905 -16.38694 -16.21045 -15.97487 -15.33314 -14.96967 -14.54927 -14.20771 -13.81949 -13.34756 -13.13822 -13.04186 -12.88966 -12.66858 -12.48068 -12.44462 -12.39521 -12.26196 -11.99444 -11.85279 -11.61148 -11.17561 -10.96667 -10.85436 -10.46307 -10.15567 -8.77889 -8.02532 -6.05380 1.40265 1.43392 1.51433 2.45579 3.02215 3.16959 3.40265 4.00106 4.19871 4.24209 4.29012 4.42842 4.50907 4.51869 4.56522 4.68823 4.73637 4.76722 4.82280 4.97148 5.01341 5.09044 5.12942 5.13316 5.20000 5.32236 5.39391 5.45510 5.54830 5.75405 5.86397 5.87508 6.28073 6.37038 6.53000 6.82990 7.07386 7.55482 9.02454 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.011265 C = 0.009391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.510809 B = 2485.083584 C = 2980.902769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C 0.204 3.796 4 H 0.014 0.986 5 C -0.480 4.480 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.926 5.926 9 Si 0.937 3.063 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.529 5.529 14 C 0.004 3.996 15 C 0.063 3.937 16 O -0.398 6.398 17 C 0.080 3.920 18 C 0.081 3.919 19 C -0.161 4.161 20 C -0.122 4.122 21 H 0.027 0.973 22 H 0.083 0.917 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.257 0.743 27 H 0.095 0.905 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 1.808 -9.395 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.144 4.144 3 C 0.097 3.903 4 H 0.032 0.968 5 C -0.519 4.519 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.567 5.567 9 Si 0.764 3.236 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.196 1.196 13 N -0.255 5.255 14 C -0.124 4.124 15 C -0.014 4.014 16 O -0.316 6.316 17 C 0.003 3.997 18 C -0.009 4.009 19 C -0.220 4.220 20 C -0.179 4.179 21 H 0.046 0.954 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.078 1.767 -9.549 10.187 hybrid contribution 0.484 -0.004 1.658 1.727 sum -2.594 1.762 -7.891 8.491 Atomic orbital electron populations 1.22403 0.96377 1.00814 1.02285 1.21609 0.94563 0.98900 0.99350 1.19413 0.95453 0.91177 0.84235 0.96798 1.21171 0.92764 1.46269 0.91669 0.93384 1.25473 0.99510 0.95840 0.97313 1.70045 1.31980 1.51826 1.02820 0.85869 0.82081 0.78331 0.77296 1.20225 1.21651 1.19552 1.62696 1.36180 1.07137 1.19465 1.23331 0.92275 1.01407 0.95361 1.22843 1.02846 0.80383 0.95301 1.87881 1.44721 1.22053 1.76990 1.22734 0.87856 0.99308 0.89773 1.21528 0.95230 0.88537 0.95631 1.22232 0.98933 1.01073 0.99764 1.21817 0.96040 0.98293 1.01782 0.95403 0.89825 0.92760 0.92793 0.95051 0.93405 0.88704 0.94887 0.92569 0.86623 0.87529 0.92676 0.91765 0.94700 0.92744 0.92428 0.93347 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.98 8.98 71.98 0.65 -5.34 16 2 C -0.11 -4.65 4.99 30.60 0.15 -4.49 16 3 C 0.20 9.70 1.49 44.17 0.07 9.77 16 4 H 0.01 0.77 4.64 -2.39 -0.01 0.76 16 5 C -0.48 -25.17 5.18 25.60 0.13 -25.03 16 6 H 0.05 2.59 7.46 -2.91 -0.02 2.57 16 7 C 0.02 0.89 4.79 84.66 0.41 1.29 16 8 N -0.93 -52.85 12.85 21.45 0.28 -52.57 16 9 Si 0.94 43.35 29.54 68.60 2.03 45.37 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 N -0.53 -21.55 4.41 -825.16 -3.64 -25.19 16 14 C 0.00 0.14 3.32 86.32 0.29 0.43 16 15 C 0.06 1.79 7.01 72.02 0.50 2.30 16 16 O -0.40 -12.58 10.28 -148.98 -1.53 -14.11 16 17 C 0.08 2.54 5.70 72.02 0.41 2.95 16 18 C 0.08 3.07 0.68 3.54 0.00 3.07 16 19 C -0.16 -6.14 7.72 71.98 0.56 -5.58 16 20 C -0.12 -4.94 7.10 71.98 0.51 -4.43 16 21 H 0.03 1.12 7.89 -2.39 -0.02 1.10 16 22 H 0.08 2.70 4.11 -2.39 -0.01 2.69 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 2.23 7.21 -2.39 -0.02 2.21 16 25 H 0.03 1.54 7.97 -2.39 -0.02 1.52 16 26 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.10 3.07 4.93 -2.39 -0.01 3.05 16 28 H 0.03 1.17 5.11 -2.39 -0.01 1.16 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.03 1.56 6.15 -2.39 -0.01 1.55 16 35 H 0.05 1.99 6.06 -2.39 -0.01 1.97 16 36 H 0.06 2.79 5.51 -2.39 -0.01 2.78 16 37 H 0.05 2.00 7.56 -2.39 -0.02 1.99 16 38 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 Total: -1.00 -58.39 275.26 1.84 -56.55 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.03 Total: 15.02 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 3.67 Total: -25.07 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -3.37 Total: -77.76 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.53 Total: -14.11 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -58.39 1.84 -56.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042462059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.908 kcal (2) G-P(sol) polarization free energy of solvation -58.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds