Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47377 * 2 1 4 4 H 1.09001 * 109.47102 * 304.99882 * 3 2 1 5 5 C 1.50697 * 109.47023 * 185.00191 * 3 2 1 6 6 H 1.07996 * 119.99773 * 245.39385 * 5 3 2 7 7 C 1.37878 * 120.00360 * 65.39554 * 5 3 2 8 8 N 1.31518 * 119.99876 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00212 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47195 * 59.99884 * 9 7 5 11 11 H 1.48499 * 109.47012 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47082 * 299.99480 * 9 7 5 13 13 N 1.46894 * 109.47122 * 64.99837 * 3 2 1 14 14 C 1.47021 * 110.99814 * 71.20417 * 13 3 2 15 15 C 1.53099 * 109.25494 * 182.38854 * 14 13 3 16 16 O 1.43012 * 109.26048 * 303.14978 * 15 14 13 17 17 C 1.43112 * 113.76211 * 58.67653 * 16 15 14 18 18 C 1.47013 * 111.00140 * 194.83644 * 13 3 2 19 19 C 1.52999 * 109.50668 * 297.54695 * 18 13 3 20 20 C 1.53004 * 109.50719 * 57.63001 * 18 13 3 21 21 H 1.09003 * 109.46839 * 300.00243 * 1 2 3 22 22 H 1.08999 * 109.46968 * 59.99629 * 1 2 3 23 23 H 1.08994 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46839 * 239.99757 * 2 1 3 25 25 H 1.08999 * 109.46968 * 120.00371 * 2 1 3 26 26 H 0.96995 * 120.00172 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.50627 * 302.32432 * 14 13 3 28 28 H 1.09005 * 109.50654 * 62.41355 * 14 13 3 29 29 H 1.09003 * 109.50722 * 63.08813 * 15 14 13 30 30 H 1.09000 * 109.50243 * 183.17054 * 15 14 13 31 31 H 1.08993 * 109.56697 * 181.41492 * 17 16 15 32 32 H 1.08998 * 109.49878 * 61.24928 * 17 16 15 33 33 H 1.09002 * 109.47150 * 187.97292 * 19 18 13 34 34 H 1.09004 * 109.47265 * 307.97564 * 19 18 13 35 35 H 1.08997 * 109.47305 * 67.97456 * 19 18 13 36 36 H 1.09001 * 109.46701 * 299.91869 * 20 18 13 37 37 H 1.09000 * 109.46684 * 59.91073 * 20 18 13 38 38 H 1.08988 * 109.47442 * 179.91523 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1505 1.8093 0.6902 7 6 4.1392 0.9796 -1.2765 8 7 3.3982 0.5344 -2.2677 9 14 6.0009 0.9811 -1.4297 10 1 6.5866 0.1375 -0.3571 11 1 6.3889 0.4355 -2.7552 12 1 6.5073 2.3709 -1.2985 13 7 1.6515 2.0992 1.2552 14 6 2.4246 1.5699 2.3881 15 6 1.9473 2.2371 3.6807 16 8 2.0748 3.6559 3.5542 17 6 1.3337 4.2061 2.4605 18 6 1.8050 3.5580 1.1560 19 6 3.2767 3.9017 0.9174 20 6 0.9626 4.0824 -0.0086 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8183 0.2080 -3.0787 27 1 2.2761 0.4924 2.4583 28 1 3.4831 1.7823 2.2374 29 1 0.9032 1.9799 3.8591 30 1 2.5556 1.8894 4.5158 31 1 1.4987 5.2824 2.4125 32 1 0.2718 4.0061 2.6033 33 1 3.4132 4.9810 0.9849 34 1 3.8916 3.4098 1.6710 35 1 3.5736 3.5593 -0.0739 36 1 1.2976 3.6194 -0.9367 37 1 -0.0857 3.8371 0.1620 38 1 1.0756 5.1640 -0.0806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042462061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = -53.468257 kcal Electronic energy + Delta-G solvation = -17817.338369 eV Core-core repulsion = 15273.450604 eV Total energy + Delta-G solvation = -2543.887764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15674 -37.69089 -35.16102 -33.89571 -32.67063 -29.38880 -28.57323 -27.95181 -26.49564 -24.44729 -23.32925 -21.46286 -19.41980 -18.30017 -17.40510 -16.94252 -16.54511 -16.09940 -15.73469 -15.12485 -15.06527 -14.50744 -14.26236 -13.72571 -13.42863 -13.15642 -13.06329 -12.88136 -12.73659 -12.58961 -12.43897 -12.30217 -12.14840 -11.94290 -11.76924 -11.38138 -11.24109 -11.03941 -10.89198 -10.33580 -10.16105 -8.85467 -7.99669 -6.11653 1.36600 1.39063 1.44152 2.42566 3.05156 3.21977 3.35406 4.01819 4.20970 4.27989 4.36719 4.50596 4.55205 4.66283 4.76097 4.77793 4.82086 4.89243 4.91745 4.98933 5.05544 5.11237 5.20545 5.25482 5.37134 5.43272 5.45919 5.60390 5.66490 5.74703 5.85260 6.08428 6.27793 6.31703 6.44505 6.73046 7.03615 7.52517 8.98231 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025292 B = 0.011789 C = 0.010275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.809645 B = 2374.548031 C = 2724.447698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.215 3.785 4 H 0.026 0.974 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.931 3.069 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.518 5.518 14 C 0.021 3.979 15 C 0.069 3.931 16 O -0.400 6.400 17 C 0.080 3.920 18 C 0.073 3.927 19 C -0.159 4.159 20 C -0.129 4.129 21 H 0.058 0.942 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.257 0.743 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 4.612 7.856 10.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.044 0.956 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.178 4.178 8 N -0.554 5.554 9 Si 0.759 3.241 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.242 5.242 14 C -0.107 4.107 15 C -0.008 4.008 16 O -0.319 6.319 17 C 0.003 3.997 18 C -0.017 4.017 19 C -0.217 4.217 20 C -0.186 4.186 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.967 4.543 7.885 10.367 hybrid contribution 2.067 -0.383 -1.012 2.334 sum -2.900 4.160 6.873 8.541 Atomic orbital electron populations 1.21555 0.96265 0.99684 1.00700 1.21381 0.94560 0.98655 0.99402 1.19167 0.91927 0.91120 0.86997 0.95615 1.22165 0.94192 1.40136 1.00734 0.92035 1.25479 1.00553 0.95666 0.96120 1.70016 1.35862 1.43588 1.05947 0.86030 0.83040 0.78169 0.76895 1.20259 1.21455 1.20218 1.62815 1.53787 1.02851 1.04765 1.22665 0.96678 0.99596 0.91792 1.22741 1.01311 0.80193 0.96571 1.87887 1.71997 1.21905 1.50131 1.22768 0.95126 0.97911 0.83904 1.21618 0.94428 0.89387 0.96307 1.22516 0.97519 0.99393 1.02259 1.21742 0.99484 1.00549 0.96844 0.92285 0.94881 0.93833 0.93255 0.95168 0.93331 0.91093 0.95044 0.92074 0.87548 0.87598 0.92058 0.93399 0.94278 0.92195 0.94160 0.91845 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.80 71.98 0.71 -4.11 16 2 C -0.10 -4.67 5.28 30.59 0.16 -4.50 16 3 C 0.21 10.10 1.34 44.17 0.06 10.16 16 4 H 0.03 1.37 5.57 -2.39 -0.01 1.35 16 5 C -0.53 -27.40 5.02 25.60 0.13 -27.27 16 6 H 0.06 3.19 4.16 -2.91 -0.01 3.17 16 7 C 0.02 1.12 5.30 84.65 0.45 1.57 16 8 N -0.91 -51.49 11.71 21.45 0.25 -51.24 16 9 Si 0.93 43.39 29.54 68.60 2.03 45.41 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.52 -20.50 3.91 -825.17 -3.22 -23.72 16 14 C 0.02 0.80 4.66 86.31 0.40 1.20 16 15 C 0.07 2.08 7.01 72.02 0.50 2.59 16 16 O -0.40 -13.06 10.42 -148.98 -1.55 -14.62 16 17 C 0.08 2.40 5.70 72.01 0.41 2.81 16 18 C 0.07 2.62 0.68 3.54 0.00 2.62 16 19 C -0.16 -6.27 6.62 71.98 0.48 -5.79 16 20 C -0.13 -4.35 8.22 71.98 0.59 -3.76 16 21 H 0.06 2.14 7.75 -2.39 -0.02 2.12 16 22 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.05 2.59 6.41 -2.39 -0.02 2.58 16 25 H 0.03 1.36 6.51 -2.39 -0.02 1.34 16 26 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 27 H 0.07 2.69 6.50 -2.39 -0.02 2.68 16 28 H 0.03 1.34 4.46 -2.38 -0.01 1.33 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 34 H 0.04 1.63 5.35 -2.39 -0.01 1.62 16 35 H 0.06 2.77 5.74 -2.39 -0.01 2.76 16 36 H 0.04 1.62 6.08 -2.39 -0.01 1.61 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -56.77 276.65 2.43 -54.34 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.03 Total: 14.30 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.89 Total: -24.47 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -2.97 Total: -74.96 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.55 Total: -14.62 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -56.77 2.43 -54.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042462061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.871 kcal (2) G-P(sol) polarization free energy of solvation -56.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds