Wall clock time and date at job start Sun Mar 29 2020 21:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47334 * 2 1 4 4 H 1.08997 * 109.46576 * 54.88979 * 3 2 1 5 5 C 1.50705 * 109.46940 * 174.88617 * 3 2 1 6 6 H 1.07997 * 119.99784 * 119.99934 * 5 3 2 7 7 C 1.37871 * 119.99918 * 300.00115 * 5 3 2 8 8 N 1.31510 * 120.00395 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99811 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46906 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.46957 * 300.00005 * 9 7 5 12 12 H 1.48501 * 109.47019 * 60.00046 * 9 7 5 13 13 N 1.46898 * 109.46906 * 294.88671 * 3 2 1 14 14 C 1.46898 * 110.99961 * 154.15984 * 13 3 2 15 15 C 1.52997 * 109.47439 * 185.52876 * 14 13 3 16 16 H 1.09004 * 109.47694 * 305.02193 * 15 14 13 17 17 C 1.53089 * 109.48176 * 185.00216 * 15 14 13 18 18 C 1.53178 * 109.16360 * 182.40711 * 17 15 14 19 19 C 1.53185 * 109.03462 * 56.97597 * 18 17 15 20 20 C 1.53089 * 109.16391 * 303.01710 * 19 18 17 21 21 O 1.42902 * 109.47877 * 65.05315 * 15 14 13 22 22 H 1.09004 * 109.47007 * 57.58543 * 1 2 3 23 23 H 1.09000 * 109.47482 * 177.58581 * 1 2 3 24 24 H 1.09000 * 109.46969 * 297.58834 * 1 2 3 25 25 H 1.09002 * 109.47192 * 239.99577 * 2 1 3 26 26 H 1.09009 * 109.46720 * 120.00208 * 2 1 3 27 27 H 0.97000 * 120.00211 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99676 * 278.11316 * 13 3 2 29 29 H 1.09009 * 109.46765 * 305.52861 * 14 13 3 30 30 H 1.08999 * 109.47056 * 65.52266 * 14 13 3 31 31 H 1.09005 * 109.51895 * 302.30965 * 17 15 14 32 32 H 1.08993 * 109.52933 * 62.43455 * 17 15 14 33 33 H 1.09003 * 109.54642 * 176.84137 * 18 17 15 34 34 H 1.08996 * 109.54352 * 297.02254 * 18 17 15 35 35 H 1.09001 * 109.52016 * 62.92882 * 19 18 17 36 36 H 1.08998 * 109.51619 * 183.05327 * 19 18 17 37 37 H 1.08999 * 109.47633 * 177.58985 * 20 19 18 38 38 H 1.08998 * 109.48425 * 297.61924 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6039 1.9820 0.8407 5 6 3.5418 1.4443 0.1266 6 1 4.1485 1.8883 -0.6486 7 6 4.1410 0.8790 1.2322 8 7 3.4022 0.3388 2.1765 9 14 6.0024 0.8819 1.3895 10 1 6.3928 0.2192 2.6598 11 1 6.5971 0.1472 0.2442 12 1 6.4970 2.2821 1.3899 13 7 1.6538 2.0984 -1.2564 14 6 1.5553 3.5536 -1.0819 15 6 1.0197 4.1864 -2.3677 16 1 1.6484 3.8907 -3.2076 17 6 1.0343 5.7111 -2.2310 18 6 0.4411 6.3354 -3.4978 19 6 -0.9722 5.7843 -3.7115 20 6 -0.9093 4.2568 -3.7912 21 8 -0.3195 3.7427 -2.5952 22 1 -0.3633 0.5509 -0.8676 23 1 -0.3634 -1.0267 -0.0433 24 1 -0.3633 0.4759 0.9108 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 3.8238 -0.0585 2.9546 28 1 2.2969 1.8658 -1.9982 29 1 0.8772 3.7756 -0.2578 30 1 2.5419 3.9606 -0.8602 31 1 0.4386 6.0051 -1.3667 32 1 2.0602 6.0554 -2.1003 33 1 0.3968 7.4185 -3.3843 34 1 1.0654 6.0838 -4.3550 35 1 -1.6084 6.0798 -2.8772 36 1 -1.3814 6.1819 -4.6403 37 1 -1.9173 3.8568 -3.9004 38 1 -0.3061 3.9621 -4.6499 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042819895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:48 Heat of formation + Delta-G solvation = -70.636368 kcal Electronic energy + Delta-G solvation = -16448.464613 eV Core-core repulsion = 13903.832384 eV Total energy + Delta-G solvation = -2544.632229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.12797 -36.03080 -33.40989 -32.96485 -31.48435 -30.07844 -26.87344 -25.18760 -23.71688 -22.53840 -21.13451 -20.18092 -19.27914 -16.74253 -15.94221 -15.70511 -14.83912 -14.51942 -14.43633 -13.99944 -13.47988 -13.11266 -12.68043 -12.51714 -12.32170 -11.91998 -11.58866 -11.21126 -11.15692 -11.03720 -10.94133 -10.86603 -10.59705 -10.49045 -10.19345 -9.95982 -9.51729 -9.36900 -9.09317 -8.96338 -8.33724 -7.13194 -5.95392 -4.09260 3.29263 3.34700 3.36668 4.13304 4.41363 4.80539 4.86087 4.94687 5.08627 5.28818 5.36590 5.46969 5.60726 5.73127 5.78374 5.86751 5.93039 6.01604 6.07431 6.23757 6.26989 6.45350 6.51911 6.63161 6.66182 6.84375 7.22301 7.31234 7.51858 7.63064 7.69559 7.83637 8.16133 8.20923 8.40513 8.74359 9.05024 9.58195 11.04048 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.006598 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.256053 B = 4242.669872 C = 4880.011267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.287 1.287 11 H -0.277 1.277 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.075 3.925 15 C 0.096 3.904 16 H 0.050 0.950 17 C -0.152 4.152 18 C -0.120 4.120 19 C -0.156 4.156 20 C 0.058 3.942 21 O -0.357 6.357 22 H 0.053 0.947 23 H 0.022 0.978 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.262 0.738 28 H 0.324 0.676 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 8.930 -9.629 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.212 1.212 11 H -0.203 1.203 12 H -0.205 1.205 13 N -0.309 5.309 14 C -0.055 4.055 15 C 0.038 3.962 16 H 0.068 0.932 17 C -0.190 4.190 18 C -0.158 4.158 19 C -0.194 4.194 20 C -0.019 4.019 21 O -0.275 6.275 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.599 8.593 -9.198 14.212 hybrid contribution 2.197 0.494 0.012 2.252 sum -4.402 9.088 -9.186 13.651 Atomic orbital electron populations 1.21706 0.98917 0.98267 1.00639 1.21474 0.92221 0.99169 1.01435 1.19137 0.92570 0.91371 0.86195 0.95083 1.21859 0.92873 1.38345 1.05493 0.93011 1.24932 0.97826 0.95018 0.95723 1.69874 1.34844 1.38198 1.09356 0.86728 0.86176 0.78121 0.77357 1.21224 1.20306 1.20468 1.60804 1.54704 1.05615 1.09819 1.21772 0.98374 0.90694 0.94664 1.22204 0.83819 0.91653 0.98538 0.93196 1.22205 1.01670 0.96771 0.98343 1.21567 0.96210 0.99903 0.98114 1.22202 0.97577 0.97472 1.02140 1.22491 0.98537 0.92426 0.88453 1.88117 1.27920 1.70230 1.41260 0.92797 0.95858 0.94659 0.95237 0.89343 0.92845 0.86015 0.91408 0.94169 0.91086 0.91079 0.91945 0.92112 0.91248 0.91542 0.89450 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.83 37.16 0.37 -2.65 16 2 C -0.10 -2.59 5.45 -26.73 -0.15 -2.74 16 3 C 0.22 5.46 1.97 -68.86 -0.14 5.32 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.55 -14.87 8.47 -34.44 -0.29 -15.16 16 6 H 0.05 1.39 7.73 -52.49 -0.41 0.98 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -25.29 11.29 55.43 0.63 -24.66 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -14.84 5.58 -107.95 -0.60 -15.44 16 14 C 0.08 1.45 5.18 -3.83 -0.02 1.43 16 15 C 0.10 1.53 2.87 -26.69 -0.08 1.46 16 16 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.15 -1.99 5.42 -26.59 -0.14 -2.14 16 18 C -0.12 -1.32 6.03 -26.54 -0.16 -1.48 16 19 C -0.16 -1.68 6.14 -26.59 -0.16 -1.84 16 20 C 0.06 0.74 6.84 37.20 0.25 0.99 16 21 O -0.36 -6.02 10.35 -35.23 -0.36 -6.38 16 22 H 0.05 1.17 7.69 -51.93 -0.40 0.77 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.42 5.95 -51.92 -0.31 2.12 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.32 6.95 8.46 -39.29 -0.33 6.62 16 29 H 0.07 1.38 7.92 -51.92 -0.41 0.97 16 30 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 301.15 15.07 4.54 4.54 Total: -1.00 -28.53 301.15 -8.32 -36.86 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.89 Total: 3.93 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -0.61 Total: -15.03 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.02 Total: -40.10 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.36 Total: -6.38 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.53 -8.32 -36.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042819895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.779 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds