Wall clock time and date at job start Sun Mar 29 2020 21:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47334 * 2 1 4 4 H 1.08997 * 109.46576 * 54.88979 * 3 2 1 5 5 C 1.50705 * 109.46940 * 174.88617 * 3 2 1 6 6 H 1.07997 * 119.99784 * 119.99934 * 5 3 2 7 7 C 1.37871 * 119.99918 * 300.00115 * 5 3 2 8 8 N 1.31510 * 120.00395 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99811 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46906 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.46957 * 300.00005 * 9 7 5 12 12 H 1.48501 * 109.47019 * 60.00046 * 9 7 5 13 13 N 1.46898 * 109.46906 * 294.88671 * 3 2 1 14 14 C 1.46898 * 110.99961 * 154.15984 * 13 3 2 15 15 C 1.52997 * 109.47439 * 185.52876 * 14 13 3 16 16 H 1.09004 * 109.47694 * 305.02193 * 15 14 13 17 17 C 1.53089 * 109.48176 * 185.00216 * 15 14 13 18 18 C 1.53178 * 109.16360 * 182.40711 * 17 15 14 19 19 C 1.53185 * 109.03462 * 56.97597 * 18 17 15 20 20 C 1.53089 * 109.16391 * 303.01710 * 19 18 17 21 21 O 1.42902 * 109.47877 * 65.05315 * 15 14 13 22 22 H 1.09004 * 109.47007 * 57.58543 * 1 2 3 23 23 H 1.09000 * 109.47482 * 177.58581 * 1 2 3 24 24 H 1.09000 * 109.46969 * 297.58834 * 1 2 3 25 25 H 1.09002 * 109.47192 * 239.99577 * 2 1 3 26 26 H 1.09009 * 109.46720 * 120.00208 * 2 1 3 27 27 H 0.97000 * 120.00211 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99676 * 278.11316 * 13 3 2 29 29 H 1.09009 * 109.46765 * 305.52861 * 14 13 3 30 30 H 1.08999 * 109.47056 * 65.52266 * 14 13 3 31 31 H 1.09005 * 109.51895 * 302.30965 * 17 15 14 32 32 H 1.08993 * 109.52933 * 62.43455 * 17 15 14 33 33 H 1.09003 * 109.54642 * 176.84137 * 18 17 15 34 34 H 1.08996 * 109.54352 * 297.02254 * 18 17 15 35 35 H 1.09001 * 109.52016 * 62.92882 * 19 18 17 36 36 H 1.08998 * 109.51619 * 183.05327 * 19 18 17 37 37 H 1.08999 * 109.47633 * 177.58985 * 20 19 18 38 38 H 1.08998 * 109.48425 * 297.61924 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6039 1.9820 0.8407 5 6 3.5418 1.4443 0.1266 6 1 4.1485 1.8883 -0.6486 7 6 4.1410 0.8790 1.2322 8 7 3.4022 0.3388 2.1765 9 14 6.0024 0.8819 1.3895 10 1 6.3928 0.2192 2.6598 11 1 6.5971 0.1472 0.2442 12 1 6.4970 2.2821 1.3899 13 7 1.6538 2.0984 -1.2564 14 6 1.5553 3.5536 -1.0819 15 6 1.0197 4.1864 -2.3677 16 1 1.6484 3.8907 -3.2076 17 6 1.0343 5.7111 -2.2310 18 6 0.4411 6.3354 -3.4978 19 6 -0.9722 5.7843 -3.7115 20 6 -0.9093 4.2568 -3.7912 21 8 -0.3195 3.7427 -2.5952 22 1 -0.3633 0.5509 -0.8676 23 1 -0.3634 -1.0267 -0.0433 24 1 -0.3633 0.4759 0.9108 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 3.8238 -0.0585 2.9546 28 1 2.2969 1.8658 -1.9982 29 1 0.8772 3.7756 -0.2578 30 1 2.5419 3.9606 -0.8602 31 1 0.4386 6.0051 -1.3667 32 1 2.0602 6.0554 -2.1003 33 1 0.3968 7.4185 -3.3843 34 1 1.0654 6.0838 -4.3550 35 1 -1.6084 6.0798 -2.8772 36 1 -1.3814 6.1819 -4.6403 37 1 -1.9173 3.8568 -3.9004 38 1 -0.3061 3.9621 -4.6499 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042819895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:48 Heat of formation + Delta-G solvation = -88.493550 kcal Electronic energy + Delta-G solvation = -16449.238959 eV Core-core repulsion = 13903.832384 eV Total energy + Delta-G solvation = -2545.406575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28364 -37.88265 -34.71821 -34.43856 -33.33741 -31.55393 -28.64185 -26.71873 -24.97030 -24.25099 -22.57159 -21.52613 -20.92233 -18.75072 -17.24835 -16.90739 -16.69097 -16.00671 -15.47426 -15.28875 -15.25083 -14.71324 -14.15824 -14.06518 -13.59762 -13.40459 -13.17350 -13.02164 -12.88548 -12.72125 -12.52266 -12.14203 -12.07834 -11.87932 -11.68560 -11.50939 -11.35682 -11.06654 -10.93351 -10.45645 -10.21088 -8.99761 -8.03876 -6.27825 1.39787 1.40599 1.48382 2.40581 2.97925 3.14650 3.55021 3.95200 3.99350 4.08036 4.18790 4.30669 4.49417 4.53756 4.61779 4.73239 4.77934 4.80956 4.87959 4.94452 4.95750 5.03640 5.11618 5.16403 5.19317 5.26308 5.43040 5.43989 5.52227 5.63959 5.78638 6.10667 6.20283 6.38934 6.51441 6.84110 7.03418 7.43962 8.92126 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033395 B = 0.006598 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.256053 B = 4242.669872 C = 4880.011267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.222 3.778 4 H -0.005 1.005 5 C -0.562 4.562 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.284 1.284 11 H -0.271 1.271 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.077 3.923 15 C 0.104 3.896 16 H 0.054 0.946 17 C -0.149 4.149 18 C -0.117 4.117 19 C -0.151 4.151 20 C 0.050 3.950 21 O -0.389 6.389 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.262 0.738 28 H 0.327 0.673 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 9.871 -11.189 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.013 0.987 5 C -0.601 4.601 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.779 3.221 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.199 1.199 13 N -0.304 5.304 14 C -0.053 4.053 15 C 0.046 3.954 16 H 0.072 0.928 17 C -0.187 4.187 18 C -0.155 4.155 19 C -0.189 4.189 20 C -0.026 4.026 21 O -0.308 6.308 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.444 9.549 -10.779 15.777 hybrid contribution 2.094 0.203 0.486 2.159 sum -4.351 9.752 -10.294 14.832 Atomic orbital electron populations 1.21552 0.96627 0.99705 1.00310 1.21348 0.94243 0.98416 0.99944 1.18919 0.91692 0.91573 0.86520 0.98689 1.22154 0.93912 1.38356 1.05693 0.92986 1.25706 1.02329 0.94664 0.95417 1.70011 1.36602 1.38725 1.09751 0.85693 0.80713 0.78262 0.77435 1.20895 1.19621 1.19915 1.60740 1.54288 1.07127 1.08236 1.21779 0.97814 0.89310 0.96409 1.22022 0.83806 0.93175 0.96380 0.92761 1.22172 1.02294 0.94657 0.99594 1.21578 0.96185 1.00809 0.96885 1.22174 0.97544 0.95889 1.03297 1.22748 0.98883 0.93948 0.87069 1.88051 1.28063 1.71329 1.43388 0.92545 0.93553 0.95398 0.95316 0.92051 0.92847 0.85646 0.93232 0.94929 0.91857 0.90418 0.90073 0.91251 0.91801 0.88886 0.88387 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 9.83 71.98 0.71 -4.72 16 2 C -0.10 -5.08 5.45 30.60 0.17 -4.92 16 3 C 0.22 11.54 1.97 44.17 0.09 11.62 16 4 H 0.00 -0.29 7.70 -2.39 -0.02 -0.30 16 5 C -0.56 -30.98 8.47 25.60 0.22 -30.77 16 6 H 0.05 2.80 7.73 -2.91 -0.02 2.78 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -53.07 11.29 21.44 0.24 -52.83 16 9 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 13 N -0.68 -29.81 5.58 -495.45 -2.77 -32.58 16 14 C 0.08 3.02 5.18 86.30 0.45 3.47 16 15 C 0.10 3.26 2.87 30.62 0.09 3.34 16 16 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 17 C -0.15 -3.70 5.42 30.68 0.17 -3.54 16 18 C -0.12 -2.22 6.03 30.72 0.19 -2.04 16 19 C -0.15 -2.83 6.14 30.69 0.19 -2.64 16 20 C 0.05 1.17 6.84 72.01 0.49 1.66 16 21 O -0.39 -12.79 10.35 -148.98 -1.54 -14.33 16 22 H 0.06 2.41 7.69 -2.38 -0.02 2.39 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 3.44 5.95 -2.38 -0.01 3.43 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.33 14.06 8.46 -89.69 -0.76 13.31 16 29 H 0.05 2.10 7.92 -2.38 -0.02 2.08 16 30 H 0.03 1.32 8.12 -2.39 -0.02 1.30 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -61.23 301.15 1.40 -59.83 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.25 Total: 21.33 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.19 Total: -27.03 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.52 Total: -85.40 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -1.54 Total: -14.33 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -61.23 1.40 -59.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042819895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.664 kcal (2) G-P(sol) polarization free energy of solvation -61.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds