Wall clock time and date at job start Sun Mar 29 2020 21:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 H 1.09000 * 109.46968 * 305.65762 * 3 2 1 5 5 C 1.50699 * 109.47457 * 185.65200 * 3 2 1 6 6 H 1.07996 * 120.00617 * 239.99926 * 5 3 2 7 7 C 1.37882 * 119.99518 * 60.00345 * 5 3 2 8 8 N 1.31510 * 120.00056 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99793 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47201 * 89.99808 * 9 7 5 11 11 H 1.48502 * 109.46825 * 209.99662 * 9 7 5 12 12 H 1.48493 * 109.46944 * 329.99460 * 9 7 5 13 13 N 1.46906 * 109.47104 * 65.65708 * 3 2 1 14 14 C 1.46899 * 110.99926 * 205.49358 * 13 3 2 15 15 C 1.52998 * 109.47165 * 185.19769 * 14 13 3 16 16 H 1.09004 * 109.47935 * 59.99931 * 15 14 13 17 17 C 1.53093 * 109.48351 * 180.02562 * 15 14 13 18 18 C 1.53174 * 109.16612 * 177.59198 * 17 15 14 19 19 C 1.53177 * 109.03604 * 303.02301 * 18 17 15 20 20 C 1.53091 * 109.16703 * 56.97697 * 19 18 17 21 21 O 1.42900 * 109.48194 * 299.97742 * 15 14 13 22 22 H 1.09006 * 109.47285 * 295.54757 * 1 2 3 23 23 H 1.08996 * 109.46798 * 55.55225 * 1 2 3 24 24 H 1.09007 * 109.46933 * 175.55063 * 1 2 3 25 25 H 1.09002 * 109.47601 * 239.99945 * 2 1 3 26 26 H 1.09002 * 109.47315 * 119.99866 * 2 1 3 27 27 H 0.97000 * 119.99804 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99785 * 329.44075 * 13 3 2 29 29 H 1.08996 * 109.47260 * 305.20029 * 14 13 3 30 30 H 1.09000 * 109.47232 * 65.20218 * 14 13 3 31 31 H 1.08994 * 109.52009 * 297.50299 * 17 15 14 32 32 H 1.08998 * 109.51889 * 57.68591 * 17 15 14 33 33 H 1.09005 * 109.54199 * 62.88575 * 18 17 15 34 34 H 1.09000 * 109.54453 * 183.15405 * 18 17 15 35 35 H 1.08998 * 109.52345 * 176.88185 * 19 18 17 36 36 H 1.09001 * 109.52132 * 297.07352 * 19 18 17 37 37 H 1.09006 * 109.48023 * 62.37177 * 20 19 18 38 38 H 1.08995 * 109.48410 * 182.39723 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5404 1.4449 -0.1399 6 1 4.1541 1.8865 0.6313 7 6 4.1299 0.8832 -1.2527 8 7 3.3827 0.3450 -2.1916 9 14 5.9899 0.8855 -1.4259 10 1 6.5454 -0.3489 -0.8153 11 1 6.3529 0.9323 -2.8651 12 1 6.5498 2.0747 -0.7352 13 7 1.6649 2.0945 1.2619 14 6 1.5729 3.5510 1.0948 15 6 1.3090 4.2045 2.4529 16 1 2.1257 3.9679 3.1349 17 6 1.2124 5.7224 2.2790 18 6 0.8885 6.3640 3.6317 19 6 -0.4090 5.7573 4.1745 20 6 -0.2498 4.2380 4.2752 21 8 0.0810 3.7086 2.9897 22 1 -0.3634 0.4432 0.9272 23 1 -0.3633 0.5813 -0.8474 24 1 -0.3633 -1.0246 -0.0797 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7974 -0.0504 -2.9743 28 1 0.8012 1.7165 1.6214 29 1 2.5094 3.9297 0.6853 30 1 0.7561 3.7877 0.4130 31 1 2.1632 6.1081 1.9112 32 1 0.4225 5.9578 1.5658 33 1 1.7020 6.1706 4.3310 34 1 0.7631 7.4392 3.5046 35 1 -0.6177 6.1679 5.1624 36 1 -1.2317 5.9933 3.4996 37 1 0.5464 4.0019 4.9812 38 1 -1.1846 3.7966 4.6207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042819907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:53 Heat of formation + Delta-G solvation = -69.464769 kcal Electronic energy + Delta-G solvation = -16455.311120 eV Core-core repulsion = 13910.729695 eV Total energy + Delta-G solvation = -2544.581425 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.19606 -36.13603 -33.47783 -32.93603 -31.58242 -29.99749 -26.88900 -25.40039 -23.75575 -22.60875 -21.13812 -20.13861 -19.36844 -16.32593 -16.01813 -15.76864 -14.84692 -14.75001 -14.42939 -14.10230 -13.67078 -13.10505 -12.78444 -12.57173 -12.41549 -11.97813 -11.70448 -11.26634 -11.12937 -11.03798 -10.91948 -10.85604 -10.59413 -10.50882 -10.20052 -9.89368 -9.57435 -9.47163 -9.15331 -8.98088 -8.28463 -7.09381 -5.91038 -3.95176 3.35590 3.41737 3.45501 4.06769 4.48925 4.80205 4.84090 4.92674 5.06220 5.36257 5.37517 5.46871 5.61041 5.70866 5.79891 5.84648 5.92079 6.03868 6.04324 6.15388 6.26565 6.28005 6.31501 6.51433 6.51907 6.63413 6.95511 7.17210 7.28812 7.54307 7.60050 7.86581 7.99265 8.41053 8.48820 8.89750 9.13118 9.69631 11.14225 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.006688 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.863667 B = 4185.678048 C = 4827.514601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.685 5.685 14 C 0.078 3.922 15 C 0.094 3.906 16 H 0.063 0.937 17 C -0.151 4.151 18 C -0.121 4.121 19 C -0.156 4.156 20 C 0.062 3.938 21 O -0.376 6.376 22 H 0.037 0.963 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.040 0.960 27 H 0.259 0.741 28 H 0.325 0.675 29 H 0.085 0.915 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 8.800 9.791 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.317 5.317 14 C -0.052 4.052 15 C 0.036 3.964 16 H 0.081 0.919 17 C -0.189 4.189 18 C -0.158 4.158 19 C -0.194 4.194 20 C -0.015 4.015 21 O -0.295 6.295 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.103 0.897 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.800 8.590 9.737 14.221 hybrid contribution 0.303 0.302 -0.520 0.674 sum -5.498 8.892 9.217 13.937 Atomic orbital electron populations 1.21877 0.99561 0.99538 0.99765 1.21749 0.91302 1.00340 1.02923 1.19159 0.95318 0.90079 0.84488 0.98199 1.21237 0.91384 1.36370 1.04077 0.92140 1.24969 0.98009 0.95749 0.95891 1.69880 1.34591 1.39604 1.09606 0.86558 0.85926 0.78356 0.76883 1.20792 1.21473 1.20057 1.60629 1.37003 1.01672 1.32376 1.21821 1.00178 0.90983 0.92199 1.22302 0.86142 0.91369 0.96599 0.91931 1.22197 1.02602 0.96675 0.97447 1.21570 0.97418 0.99668 0.97172 1.22194 0.98567 0.97188 1.01405 1.22472 1.00416 0.92595 0.86057 1.87938 1.40978 1.67454 1.33122 0.94355 0.93980 0.94507 0.88355 0.94118 0.93150 0.85688 0.89712 0.96254 0.90804 0.91320 0.91941 0.91898 0.91436 0.91325 0.93506 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.67 37.15 0.36 -2.72 16 2 C -0.12 -3.05 5.36 -26.73 -0.14 -3.19 16 3 C 0.22 5.58 2.02 -68.86 -0.14 5.44 16 4 H 0.00 0.01 7.85 -51.93 -0.41 -0.40 16 5 C -0.49 -13.81 8.56 -34.44 -0.29 -14.10 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.91 11.29 55.43 0.63 -25.28 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.69 -15.35 6.26 -107.95 -0.68 -16.02 16 14 C 0.08 1.55 5.18 -3.83 -0.02 1.53 16 15 C 0.09 1.52 2.92 -26.68 -0.08 1.45 16 16 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.15 -2.00 5.42 -26.59 -0.14 -2.15 16 18 C -0.12 -1.32 6.03 -26.55 -0.16 -1.48 16 19 C -0.16 -1.64 6.14 -26.59 -0.16 -1.81 16 20 C 0.06 0.76 6.84 37.20 0.25 1.01 16 21 O -0.38 -6.12 9.84 -35.23 -0.35 -6.47 16 22 H 0.04 0.73 6.61 -51.93 -0.34 0.38 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 25 H 0.10 2.67 5.94 -51.93 -0.31 2.37 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.33 6.98 6.10 -39.29 -0.24 6.74 16 29 H 0.08 1.76 7.93 -51.93 -0.41 1.34 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 298.08 15.07 4.49 4.49 Total: -1.00 -29.08 298.08 -8.30 -37.38 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.75 Total: 3.81 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.62 Total: -14.60 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.05 Total: -41.30 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.35 Total: -6.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.08 -8.30 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042819907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.085 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds