Wall clock time and date at job start Sun Mar 29 2020 21:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 H 1.09000 * 109.46968 * 305.65762 * 3 2 1 5 5 C 1.50699 * 109.47457 * 185.65200 * 3 2 1 6 6 H 1.07996 * 120.00617 * 239.99926 * 5 3 2 7 7 C 1.37882 * 119.99518 * 60.00345 * 5 3 2 8 8 N 1.31510 * 120.00056 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99793 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47201 * 89.99808 * 9 7 5 11 11 H 1.48502 * 109.46825 * 209.99662 * 9 7 5 12 12 H 1.48493 * 109.46944 * 329.99460 * 9 7 5 13 13 N 1.46906 * 109.47104 * 65.65708 * 3 2 1 14 14 C 1.46899 * 110.99926 * 205.49358 * 13 3 2 15 15 C 1.52998 * 109.47165 * 185.19769 * 14 13 3 16 16 H 1.09004 * 109.47935 * 59.99931 * 15 14 13 17 17 C 1.53093 * 109.48351 * 180.02562 * 15 14 13 18 18 C 1.53174 * 109.16612 * 177.59198 * 17 15 14 19 19 C 1.53177 * 109.03604 * 303.02301 * 18 17 15 20 20 C 1.53091 * 109.16703 * 56.97697 * 19 18 17 21 21 O 1.42900 * 109.48194 * 299.97742 * 15 14 13 22 22 H 1.09006 * 109.47285 * 295.54757 * 1 2 3 23 23 H 1.08996 * 109.46798 * 55.55225 * 1 2 3 24 24 H 1.09007 * 109.46933 * 175.55063 * 1 2 3 25 25 H 1.09002 * 109.47601 * 239.99945 * 2 1 3 26 26 H 1.09002 * 109.47315 * 119.99866 * 2 1 3 27 27 H 0.97000 * 119.99804 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99785 * 329.44075 * 13 3 2 29 29 H 1.08996 * 109.47260 * 305.20029 * 14 13 3 30 30 H 1.09000 * 109.47232 * 65.20218 * 14 13 3 31 31 H 1.08994 * 109.52009 * 297.50299 * 17 15 14 32 32 H 1.08998 * 109.51889 * 57.68591 * 17 15 14 33 33 H 1.09005 * 109.54199 * 62.88575 * 18 17 15 34 34 H 1.09000 * 109.54453 * 183.15405 * 18 17 15 35 35 H 1.08998 * 109.52345 * 176.88185 * 19 18 17 36 36 H 1.09001 * 109.52132 * 297.07352 * 19 18 17 37 37 H 1.09006 * 109.48023 * 62.37177 * 20 19 18 38 38 H 1.08995 * 109.48410 * 182.39723 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5404 1.4449 -0.1399 6 1 4.1541 1.8865 0.6313 7 6 4.1299 0.8832 -1.2527 8 7 3.3827 0.3450 -2.1916 9 14 5.9899 0.8855 -1.4259 10 1 6.5454 -0.3489 -0.8153 11 1 6.3529 0.9323 -2.8651 12 1 6.5498 2.0747 -0.7352 13 7 1.6649 2.0945 1.2619 14 6 1.5729 3.5510 1.0948 15 6 1.3090 4.2045 2.4529 16 1 2.1257 3.9679 3.1349 17 6 1.2124 5.7224 2.2790 18 6 0.8885 6.3640 3.6317 19 6 -0.4090 5.7573 4.1745 20 6 -0.2498 4.2380 4.2752 21 8 0.0810 3.7086 2.9897 22 1 -0.3634 0.4432 0.9272 23 1 -0.3633 0.5813 -0.8474 24 1 -0.3633 -1.0246 -0.0797 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7974 -0.0504 -2.9743 28 1 0.8012 1.7165 1.6214 29 1 2.5094 3.9297 0.6853 30 1 0.7561 3.7877 0.4130 31 1 2.1632 6.1081 1.9112 32 1 0.4225 5.9578 1.5658 33 1 1.7020 6.1706 4.3310 34 1 0.7631 7.4392 3.5046 35 1 -0.6177 6.1679 5.1624 36 1 -1.2317 5.9933 3.4996 37 1 0.5464 4.0019 4.9812 38 1 -1.1846 3.7966 4.6207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042819907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:53 Heat of formation + Delta-G solvation = -88.035890 kcal Electronic energy + Delta-G solvation = -16456.116425 eV Core-core repulsion = 13910.729695 eV Total energy + Delta-G solvation = -2545.386729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35687 -37.98978 -34.71644 -34.49074 -33.42234 -31.44829 -28.72107 -26.90871 -25.02969 -24.28126 -22.57608 -21.48760 -21.02477 -18.38285 -17.32370 -16.95402 -16.71109 -16.30246 -15.71352 -15.34369 -15.24495 -14.66847 -14.31000 -14.03398 -13.70565 -13.49567 -13.22910 -13.07466 -12.82389 -12.66484 -12.45194 -12.15924 -11.99113 -11.96319 -11.81336 -11.52990 -11.36562 -11.05885 -11.02892 -10.42341 -10.27524 -8.98916 -8.05792 -6.18495 1.42262 1.43112 1.53540 2.44707 2.91838 3.18620 3.51863 3.92569 3.98343 4.05053 4.24989 4.25461 4.40179 4.48659 4.56991 4.58169 4.69014 4.71929 4.83522 4.85932 4.93131 5.01247 5.09316 5.10590 5.15339 5.24044 5.26316 5.36954 5.42475 5.59400 5.75123 5.89670 6.36050 6.39724 6.53098 6.95160 7.01983 7.50663 8.97709 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.006688 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.863667 B = 4185.678048 C = 4827.514601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.222 3.778 4 H -0.034 1.034 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.684 5.684 14 C 0.079 3.921 15 C 0.104 3.896 16 H 0.055 0.945 17 C -0.148 4.148 18 C -0.118 4.118 19 C -0.151 4.151 20 C 0.052 3.948 21 O -0.400 6.400 22 H 0.054 0.946 23 H 0.034 0.966 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.068 0.932 30 H 0.013 0.987 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 9.662 11.201 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.114 3.886 4 H -0.017 1.017 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.316 5.316 14 C -0.051 4.051 15 C 0.046 3.954 16 H 0.073 0.927 17 C -0.186 4.186 18 C -0.156 4.156 19 C -0.188 4.188 20 C -0.024 4.024 21 O -0.320 6.320 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.001 9.462 11.167 15.819 hybrid contribution 0.318 0.033 -0.937 0.990 sum -5.683 9.496 10.230 15.070 Atomic orbital electron populations 1.21738 0.96423 1.01106 1.00299 1.21589 0.94131 0.98989 1.01193 1.18969 0.94222 0.90733 0.84686 1.01673 1.21469 0.92646 1.36788 1.04226 0.93140 1.25725 1.02518 0.95250 0.95485 1.70010 1.36331 1.39860 1.09914 0.85548 0.80467 0.78525 0.77014 1.20169 1.20867 1.19536 1.60562 1.37409 1.03158 1.30493 1.21825 0.99095 0.89540 0.94646 1.22051 0.86311 0.92953 0.94117 0.92656 1.22161 1.02791 0.94462 0.99205 1.21586 0.97857 1.00588 0.95523 1.22170 0.98156 0.95690 1.02827 1.22759 1.01260 0.94102 0.84266 1.87881 1.40518 1.68439 1.35158 0.92744 0.94649 0.92202 0.91231 0.94518 0.93034 0.85040 0.91380 0.96926 0.90456 0.91687 0.91416 0.89948 0.88779 0.91582 0.93084 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 9.67 71.98 0.70 -4.89 16 2 C -0.12 -5.98 5.36 30.59 0.16 -5.82 16 3 C 0.22 11.75 2.02 44.17 0.09 11.84 16 4 H -0.03 -2.01 7.85 -2.39 -0.02 -2.03 16 5 C -0.51 -29.43 8.56 25.60 0.22 -29.21 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.47 5.29 84.66 0.45 0.91 16 8 N -0.92 -54.15 11.29 21.45 0.24 -53.91 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.68 -31.16 6.26 -495.45 -3.10 -34.26 16 14 C 0.08 3.18 5.18 86.30 0.45 3.63 16 15 C 0.10 3.32 2.92 30.62 0.09 3.41 16 16 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 17 C -0.15 -3.75 5.42 30.68 0.17 -3.58 16 18 C -0.12 -2.27 6.03 30.71 0.19 -2.08 16 19 C -0.15 -2.73 6.14 30.68 0.19 -2.54 16 20 C 0.05 1.17 6.84 72.01 0.49 1.67 16 21 O -0.40 -12.61 9.84 -148.98 -1.47 -14.08 16 22 H 0.05 2.00 6.61 -2.38 -0.02 1.99 16 23 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.07 3.87 5.94 -2.39 -0.01 3.86 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.33 14.22 6.10 -89.69 -0.55 13.67 16 29 H 0.07 2.93 7.93 -2.39 -0.02 2.91 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -62.90 298.08 1.34 -61.55 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.46 Total: 20.50 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 3.19 Total: -26.66 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -2.86 Total: -88.17 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.47 Total: -14.08 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -62.90 1.34 -61.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042819907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.485 kcal (2) G-P(sol) polarization free energy of solvation -62.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds