Wall clock time and date at job start Sun Mar 29 2020 21:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47142 * 2 1 4 4 H 1.08994 * 109.50780 * 305.08625 * 3 2 1 5 5 C 1.53100 * 109.50739 * 184.99722 * 3 2 1 6 6 N 1.47019 * 109.25770 * 183.21657 * 5 3 2 7 7 C 1.46894 * 111.00274 * 182.39558 * 6 5 3 8 8 C 1.52997 * 109.47515 * 169.99909 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46725 * 60.00093 * 14 12 10 16 16 H 1.48505 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47116 * 300.00069 * 14 12 10 18 18 C 1.47014 * 110.75375 * 58.61531 * 6 5 3 19 19 C 1.53101 * 109.25929 * 301.38708 * 18 6 5 20 20 O 1.43016 * 109.25942 * 56.84635 * 19 18 6 21 21 H 1.08998 * 109.47143 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47453 * 299.99887 * 1 2 3 23 23 H 1.09002 * 109.47424 * 60.00174 * 1 2 3 24 24 H 1.08998 * 109.47768 * 239.99667 * 2 1 3 25 25 H 1.09005 * 109.47217 * 119.99351 * 2 1 3 26 26 H 1.08997 * 109.50568 * 63.28740 * 5 3 2 27 27 H 1.09000 * 109.54359 * 303.17018 * 5 3 2 28 28 H 1.09002 * 109.47104 * 49.99641 * 7 6 5 29 29 H 1.08998 * 109.46828 * 290.00473 * 7 6 5 30 30 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 33 33 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 34 34 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 35 35 H 1.08993 * 109.50312 * 61.32169 * 18 6 5 36 36 H 1.08999 * 109.50872 * 181.45203 * 18 6 5 37 37 H 1.09004 * 109.50474 * 296.91355 * 19 18 6 38 38 H 1.08993 * 109.54440 * 176.80632 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5658 1.4453 -0.1257 6 7 4.0562 2.8290 -0.0476 7 6 5.5139 2.8816 -0.2212 8 6 5.9561 4.3372 -0.3836 9 6 7.4744 4.3917 -0.5650 10 6 7.9100 5.8256 -0.7244 11 1 7.1772 6.6185 -0.6993 12 6 9.2441 6.1250 -0.9023 13 7 10.1364 5.1595 -0.9324 14 14 9.7840 7.9023 -1.1006 15 1 9.4013 8.6737 0.1093 16 1 11.2578 7.9554 -1.2753 17 1 9.1222 8.4906 -2.2926 18 6 3.6538 3.4536 1.2210 19 6 2.1271 3.4306 1.3332 20 8 1.6663 2.0811 1.2240 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.8528 1.0109 -1.0833 27 1 3.9994 0.8592 0.6846 28 1 5.7947 2.3152 -1.1092 29 1 5.9997 2.4496 0.6538 30 1 5.6753 4.9035 0.5044 31 1 5.4703 4.7690 -1.2586 32 1 7.9606 3.9598 0.3097 33 1 7.7548 3.8255 -1.4531 34 1 11.0750 5.3702 -1.0571 35 1 4.0883 2.8998 2.0531 36 1 4.0051 4.4851 1.2464 37 1 1.6942 4.0291 0.5316 38 1 1.8261 3.8410 2.2970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:27 Heat of formation + Delta-G solvation = -66.766305 kcal Electronic energy + Delta-G solvation = -15959.724076 eV Core-core repulsion = 13415.259665 eV Total energy + Delta-G solvation = -2544.464411 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.66315 -36.24916 -34.05721 -33.52974 -31.36401 -29.95646 -27.84787 -25.49410 -24.01296 -22.86878 -21.33782 -20.35127 -19.84153 -16.51621 -16.48887 -15.93160 -15.15715 -14.84835 -14.75979 -14.38053 -13.83519 -13.71026 -13.66716 -13.03164 -12.31198 -12.11134 -11.83765 -11.68902 -11.45129 -11.27860 -11.07764 -11.07467 -10.80947 -10.59736 -10.47826 -10.37888 -9.64247 -9.59479 -9.29199 -9.03346 -8.33417 -8.14257 -5.98743 -4.01015 3.34292 3.38351 3.41067 3.72572 4.00014 4.47560 4.71074 4.89443 5.03686 5.08836 5.22716 5.24893 5.34279 5.36961 5.42911 5.59040 5.66941 5.73308 5.79231 5.84992 5.87732 5.93630 5.99656 6.11943 6.17092 6.29526 6.67748 6.74003 7.08736 7.16985 7.30044 7.32241 7.68728 7.83685 8.01391 8.44594 9.05912 9.62886 11.12710 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.064549 B = 0.004357 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.671632 B = 6424.215621 C = 6680.518818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.094 3.906 4 H 0.065 0.935 5 C 0.022 3.978 6 N -0.538 5.538 7 C 0.056 3.944 8 C -0.104 4.104 9 C 0.022 3.978 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.015 3.985 19 C 0.066 3.934 20 O -0.384 6.384 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.688 -8.408 2.742 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.083 0.917 5 C -0.106 4.106 6 N -0.263 5.263 7 C -0.071 4.071 8 C -0.142 4.142 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.113 4.113 19 C -0.011 4.011 20 O -0.303 6.303 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.812 -8.270 2.481 18.899 hybrid contribution 1.103 0.661 0.350 1.332 sum -15.709 -7.609 2.830 17.683 Atomic orbital electron populations 1.21694 0.95190 1.01328 1.02295 1.21526 0.96733 0.94440 1.02690 1.22199 0.93095 0.93780 0.87368 0.91659 1.22789 0.95612 0.90452 1.01775 1.62300 1.14473 1.16166 1.33333 1.22320 0.84400 1.00205 1.00158 1.21653 0.99613 0.92308 1.00659 1.19070 0.88525 0.97003 0.96970 1.21213 0.92410 0.92762 1.49389 0.92724 1.25030 0.96854 0.97187 0.95428 1.69954 1.01630 1.31693 1.50353 0.86651 0.77378 0.85240 0.78690 1.20262 1.21309 1.20205 1.22821 0.96165 1.01532 0.90817 1.22652 0.93060 0.83444 1.01985 1.87930 1.76851 1.26655 1.38901 0.92897 0.92006 0.92877 0.90551 0.91281 0.89931 0.94342 0.91107 0.95229 0.93483 0.92578 0.96836 0.96597 0.92970 0.94304 0.88903 0.92435 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.81 37.15 0.36 -0.93 16 2 C -0.12 -1.12 5.64 -26.74 -0.15 -1.27 16 3 C 0.09 1.12 2.80 -26.68 -0.07 1.05 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 5 C 0.02 0.30 4.93 -3.71 -0.02 0.28 16 6 N -0.54 -8.44 4.73 -234.31 -1.11 -9.55 16 7 C 0.06 1.01 4.96 -3.83 -0.02 0.99 16 8 C -0.10 -2.20 5.09 -26.73 -0.14 -2.34 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 10 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 14 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.01 0.21 5.44 -3.71 -0.02 0.19 16 19 C 0.07 0.81 7.01 37.21 0.26 1.07 16 20 O -0.38 -5.10 10.02 -35.23 -0.35 -5.45 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 29 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.05 0.97 6.52 -51.93 -0.34 0.63 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.37 6.38 -51.93 -0.33 1.04 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -30.58 302.83 -8.47 -39.05 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -6.95 Total: -4.69 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.34 Total: -14.24 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.37 Total: -36.08 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.35 Total: -5.45 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.58 -8.47 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.716 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds