Wall clock time and date at job start Sun Mar 29 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47142 * 2 1 4 4 H 1.08994 * 109.50780 * 305.08625 * 3 2 1 5 5 C 1.53100 * 109.50739 * 184.99722 * 3 2 1 6 6 N 1.47019 * 109.25770 * 183.21657 * 5 3 2 7 7 C 1.46894 * 111.00274 * 182.39558 * 6 5 3 8 8 C 1.52997 * 109.47515 * 169.99909 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46725 * 60.00093 * 14 12 10 16 16 H 1.48505 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47116 * 300.00069 * 14 12 10 18 18 C 1.47014 * 110.75375 * 58.61531 * 6 5 3 19 19 C 1.53101 * 109.25929 * 301.38708 * 18 6 5 20 20 O 1.43016 * 109.25942 * 56.84635 * 19 18 6 21 21 H 1.08998 * 109.47143 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47453 * 299.99887 * 1 2 3 23 23 H 1.09002 * 109.47424 * 60.00174 * 1 2 3 24 24 H 1.08998 * 109.47768 * 239.99667 * 2 1 3 25 25 H 1.09005 * 109.47217 * 119.99351 * 2 1 3 26 26 H 1.08997 * 109.50568 * 63.28740 * 5 3 2 27 27 H 1.09000 * 109.54359 * 303.17018 * 5 3 2 28 28 H 1.09002 * 109.47104 * 49.99641 * 7 6 5 29 29 H 1.08998 * 109.46828 * 290.00473 * 7 6 5 30 30 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 33 33 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 34 34 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 35 35 H 1.08993 * 109.50312 * 61.32169 * 18 6 5 36 36 H 1.08999 * 109.50872 * 181.45203 * 18 6 5 37 37 H 1.09004 * 109.50474 * 296.91355 * 19 18 6 38 38 H 1.08993 * 109.54440 * 176.80632 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5658 1.4453 -0.1257 6 7 4.0562 2.8290 -0.0476 7 6 5.5139 2.8816 -0.2212 8 6 5.9561 4.3372 -0.3836 9 6 7.4744 4.3917 -0.5650 10 6 7.9100 5.8256 -0.7244 11 1 7.1772 6.6185 -0.6993 12 6 9.2441 6.1250 -0.9023 13 7 10.1364 5.1595 -0.9324 14 14 9.7840 7.9023 -1.1006 15 1 9.4013 8.6737 0.1093 16 1 11.2578 7.9554 -1.2753 17 1 9.1222 8.4906 -2.2926 18 6 3.6538 3.4536 1.2210 19 6 2.1271 3.4306 1.3332 20 8 1.6663 2.0811 1.2240 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.8528 1.0109 -1.0833 27 1 3.9994 0.8592 0.6846 28 1 5.7947 2.3152 -1.1092 29 1 5.9997 2.4496 0.6538 30 1 5.6753 4.9035 0.5044 31 1 5.4703 4.7690 -1.2586 32 1 7.9606 3.9598 0.3097 33 1 7.7548 3.8255 -1.4531 34 1 11.0750 5.3702 -1.0571 35 1 4.0883 2.8998 2.0531 36 1 4.0051 4.4851 1.2464 37 1 1.6942 4.0291 0.5316 38 1 1.8261 3.8410 2.2970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:26 Heat of formation + Delta-G solvation = -86.349117 kcal Electronic energy + Delta-G solvation = -15960.573250 eV Core-core repulsion = 13415.259665 eV Total energy + Delta-G solvation = -2545.313585 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.74047 -37.57337 -35.50161 -34.91168 -33.24981 -30.91670 -29.41196 -27.07000 -25.07473 -24.44721 -22.55194 -21.56200 -21.33724 -18.51120 -17.48791 -17.26214 -16.56071 -16.42931 -15.87468 -15.80739 -15.12533 -15.01289 -14.57693 -14.26434 -14.02405 -13.70702 -13.17215 -12.95673 -12.76849 -12.66457 -12.55288 -12.46143 -12.15116 -11.90863 -11.85368 -11.56541 -11.41012 -11.33347 -11.11362 -10.56926 -10.51854 -9.40844 -8.20973 -6.32377 1.39714 1.43063 1.51009 2.40253 2.72352 2.86921 3.12077 3.74727 3.94609 4.00850 4.11719 4.14349 4.27138 4.28879 4.42369 4.50197 4.59940 4.62706 4.66719 4.78795 4.80712 4.91676 4.96634 4.99158 5.08101 5.12373 5.21504 5.27305 5.46255 5.49762 5.70848 5.83766 5.94989 6.00831 6.23214 6.25045 6.84111 7.36950 8.90853 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.064549 B = 0.004357 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.671632 B = 6424.215621 C = 6680.518818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.094 3.906 4 H 0.065 0.935 5 C 0.021 3.979 6 N -0.544 5.544 7 C 0.067 3.933 8 C -0.088 4.088 9 C 0.026 3.974 10 C -0.544 4.544 11 H 0.060 0.940 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.266 1.266 18 C 0.013 3.987 19 C 0.069 3.931 20 O -0.393 6.393 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.053 0.947 32 H -0.011 1.011 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.032 0.968 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.973 -7.933 2.652 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.037 3.963 4 H 0.083 0.917 5 C -0.107 4.107 6 N -0.268 5.268 7 C -0.060 4.060 8 C -0.126 4.126 9 C -0.012 4.012 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.116 4.116 19 C -0.008 4.008 20 O -0.313 6.313 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.110 0.890 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.007 0.993 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.123 -7.801 2.395 19.875 hybrid contribution 1.501 0.470 0.382 1.618 sum -16.622 -7.331 2.776 18.378 Atomic orbital electron populations 1.21668 0.94402 1.02218 1.01919 1.21550 0.97366 0.92827 1.03350 1.22303 0.91862 0.95185 0.86994 0.91665 1.22896 0.96703 0.88925 1.02162 1.62256 1.12484 1.17885 1.34210 1.22048 0.86251 0.97771 0.99941 1.21386 0.95902 0.94699 1.00629 1.18968 0.91887 0.95638 0.94693 1.21660 0.93061 0.93938 1.49577 0.92192 1.26004 0.96911 1.02178 0.94794 1.70089 1.02067 1.34228 1.51059 0.85483 0.77021 0.79229 0.79219 1.19123 1.20781 1.19096 1.22886 0.97841 1.00869 0.89957 1.22712 0.91245 0.83374 1.03420 1.87934 1.76808 1.27016 1.39515 0.91410 0.93127 0.92484 0.88940 0.91585 0.88957 0.94768 0.91045 0.95920 0.93092 0.92799 0.99265 0.98911 0.92728 0.94932 0.89528 0.92074 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.81 71.98 0.71 -1.52 16 2 C -0.11 -1.95 5.64 30.59 0.17 -1.78 16 3 C 0.09 2.11 2.80 30.63 0.09 2.19 16 4 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 5 C 0.02 0.54 4.93 86.31 0.43 0.97 16 6 N -0.54 -16.60 4.73 -895.23 -4.23 -20.83 16 7 C 0.07 2.42 4.96 86.30 0.43 2.85 16 8 C -0.09 -3.75 5.09 30.59 0.16 -3.60 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 12 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 13 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 14 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 C 0.01 0.35 5.44 86.31 0.47 0.82 16 19 C 0.07 1.59 7.01 72.02 0.50 2.10 16 20 O -0.39 -9.76 10.02 -148.98 -1.49 -11.25 16 21 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.05 0.89 7.83 -2.39 -0.02 0.87 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 2.54 8.04 -2.39 -0.02 2.52 16 29 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 30 H 0.05 2.11 6.52 -2.39 -0.02 2.09 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 2.50 6.38 -2.39 -0.02 2.49 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -64.93 302.83 1.37 -63.56 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.99 Total: 6.55 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 3.79 Total: -27.39 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -3.95 Total: -78.14 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.49 Total: -11.25 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.93 1.37 -63.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.788 kcal (2) G-P(sol) polarization free energy of solvation -64.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds