Wall clock time and date at job start Sun Mar 29 2020 21:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 H 1.09003 * 109.50942 * 54.93970 * 3 2 1 5 5 C 1.53096 * 109.51013 * 294.85254 * 3 2 1 6 6 O 1.43018 * 109.25794 * 183.26301 * 5 3 2 7 7 C 1.43024 * 113.77781 * 58.59865 * 6 5 3 8 8 C 1.53092 * 109.25527 * 301.35474 * 7 6 5 9 9 N 1.47016 * 109.50540 * 175.02195 * 3 2 1 10 10 C 1.46895 * 111.00345 * 302.32694 * 9 3 2 11 11 C 1.52995 * 109.47134 * 184.41193 * 10 9 3 12 12 C 1.53007 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47068 * 180.02562 * 12 11 10 14 14 H 1.07991 * 119.99662 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99893 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99990 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47313 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47068 * 119.99955 * 17 15 13 20 20 H 1.48504 * 109.47018 * 240.00256 * 17 15 13 21 21 H 1.08996 * 109.46823 * 185.73660 * 1 2 3 22 22 H 1.09002 * 109.47047 * 65.73614 * 1 2 3 23 23 H 1.09001 * 109.46850 * 305.73955 * 1 2 3 24 24 H 1.08993 * 109.46919 * 120.00089 * 2 1 3 25 25 H 1.08993 * 109.46980 * 240.00292 * 2 1 3 26 26 H 1.09004 * 109.50453 * 303.14927 * 5 3 2 27 27 H 1.08998 * 109.51153 * 63.27958 * 5 3 2 28 28 H 1.08992 * 109.50745 * 181.41896 * 7 6 5 29 29 H 1.09005 * 109.50154 * 61.29118 * 7 6 5 30 30 H 1.08998 * 109.51272 * 296.91037 * 8 7 6 31 31 H 1.08998 * 109.54241 * 176.80015 * 8 7 6 32 32 H 1.09001 * 109.47045 * 304.41364 * 10 9 3 33 33 H 1.09006 * 109.46893 * 64.40955 * 10 9 3 34 34 H 1.09001 * 109.47294 * 300.00018 * 11 10 9 35 35 H 1.08997 * 109.47309 * 60.00125 * 11 10 9 36 36 H 1.09001 * 109.46752 * 299.99921 * 12 11 10 37 37 H 1.08997 * 109.47330 * 59.99708 * 12 11 10 38 38 H 0.96995 * 120.00052 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6049 1.9824 0.8410 5 6 1.6386 2.1267 -1.3094 6 8 2.1825 3.4492 -1.3367 7 6 3.6077 3.4890 -1.2224 8 6 4.0280 2.8190 0.0884 9 7 3.5052 1.4452 0.1203 10 6 3.9348 0.7467 1.3390 11 6 5.4530 0.8650 1.4864 12 6 5.9005 0.1368 2.7555 13 6 7.3959 0.2539 2.9011 14 1 7.9697 0.7932 2.1621 15 6 8.0313 -0.3277 3.9777 16 7 7.3324 -0.9841 4.8778 17 14 9.8849 -0.1832 4.1577 18 1 10.4333 0.5989 3.0207 19 1 10.2062 0.5056 5.4336 20 1 10.4891 -1.5398 4.1617 21 1 -0.3633 -1.0225 0.1027 22 1 -0.3633 0.4223 -0.9369 23 1 -0.3633 0.6003 0.8342 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.0283 1.5562 -2.1525 27 1 0.5518 2.1780 -1.3751 28 1 3.9442 4.5257 -1.2255 29 1 4.0551 2.9578 -2.0626 30 1 3.6246 3.3815 0.9304 31 1 5.1157 2.7960 0.1537 32 1 3.4495 1.1959 2.2055 33 1 3.6571 -0.3053 1.2718 34 1 5.9383 0.4157 0.6199 35 1 5.7307 1.9168 1.5536 36 1 5.4152 0.5857 3.6222 37 1 5.6228 -0.9150 2.6880 38 1 7.7793 -1.3929 5.6354 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:59 Heat of formation + Delta-G solvation = -61.817340 kcal Electronic energy + Delta-G solvation = -16259.680777 eV Core-core repulsion = 13715.430969 eV Total energy + Delta-G solvation = -2544.249808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.77469 -36.33577 -34.52538 -33.22116 -31.20157 -29.64398 -27.70131 -25.42911 -24.71769 -22.46083 -21.71395 -20.12429 -19.67802 -16.60290 -16.34209 -15.98363 -15.29280 -14.86707 -14.55877 -14.39400 -14.25205 -13.59032 -13.27938 -13.06998 -12.49633 -12.18706 -11.76459 -11.65506 -11.47276 -11.27303 -11.13922 -10.89693 -10.76474 -10.55510 -10.41516 -10.24770 -9.62514 -9.54799 -9.32278 -9.02685 -8.34873 -8.11097 -5.99977 -4.02124 3.31041 3.38440 3.42747 3.83806 3.99000 4.46561 4.77684 4.89204 5.06703 5.12836 5.22230 5.34632 5.35690 5.36273 5.42235 5.60503 5.69514 5.76367 5.78523 5.89899 5.94666 5.97725 6.02985 6.13091 6.24995 6.34473 6.67013 6.75543 7.06214 7.12142 7.32529 7.33218 7.67710 7.82155 8.00193 8.43320 9.05198 9.62005 11.11562 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038496 B = 0.005362 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.164851 B = 5220.262380 C = 5821.638806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.048 3.952 4 H 0.046 0.954 5 C 0.070 3.930 6 O -0.391 6.391 7 C 0.064 3.936 8 C 0.013 3.987 9 N -0.534 5.534 10 C 0.054 3.946 11 C -0.110 4.110 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.765 5.115 -11.114 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.061 4.061 4 H 0.064 0.936 5 C -0.007 4.007 6 O -0.309 6.309 7 C -0.013 4.013 8 C -0.115 4.115 9 N -0.259 5.259 10 C -0.072 4.072 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.665 4.935 -11.378 17.027 hybrid contribution 0.899 0.164 1.074 1.410 sum -10.766 5.099 -10.305 15.751 Atomic orbital electron populations 1.21807 0.95679 1.01840 1.01639 1.21580 0.95308 0.95415 1.03462 1.22339 0.89005 0.96860 0.97923 0.93641 1.22735 0.98440 0.83311 0.96239 1.87937 1.21180 1.27470 1.94323 1.22704 0.80958 1.00901 0.96773 1.22854 1.02174 0.89126 0.97314 1.62337 1.08441 1.15234 1.39896 1.22353 0.98076 0.98469 0.88350 1.21748 0.91444 1.00531 1.01016 1.19073 0.95965 0.95381 0.91149 1.21278 0.92694 1.33621 1.08040 0.92651 1.25030 0.98252 0.95325 0.95907 1.69976 1.35392 1.35709 1.12513 0.86542 0.85755 0.77788 0.77963 1.19727 1.21041 1.21002 0.92426 0.92738 0.92748 0.90907 0.91049 0.92481 0.88824 0.88724 0.92393 0.94275 0.88486 0.95390 0.90622 0.92552 0.93307 0.96829 0.96563 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.53 37.16 0.35 -1.08 16 2 C -0.12 -1.41 5.25 -26.73 -0.14 -1.55 16 3 C 0.05 0.63 2.05 -67.60 -0.14 0.50 16 4 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 5 C 0.07 0.84 5.97 37.21 0.22 1.06 16 6 O -0.39 -5.36 10.82 -35.23 -0.38 -5.74 16 7 C 0.06 0.80 7.01 37.21 0.26 1.06 16 8 C 0.01 0.20 5.13 -3.71 -0.02 0.18 16 9 N -0.53 -8.27 4.65 -226.34 -1.05 -9.32 16 10 C 0.05 0.96 4.55 -3.83 -0.02 0.95 16 11 C -0.11 -2.28 4.65 -26.73 -0.12 -2.41 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.45 6.94 -51.93 -0.36 0.09 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.95 6.20 -51.93 -0.32 0.63 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.94 6.87 -51.93 -0.36 0.59 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.45 6.06 -51.93 -0.31 1.14 16 32 H 0.03 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.08 1.33 6.41 -51.93 -0.33 1.00 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.99 6.26 -51.93 -0.33 0.67 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 295.78 15.07 4.46 4.46 Total: -1.00 -30.52 295.78 -8.04 -38.56 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.63 Total: -3.82 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.15 Total: -14.47 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.32 Total: -35.75 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.38 Total: -5.74 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.52 -8.04 -38.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.262 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds