Wall clock time and date at job start Sun Mar 29 2020 21:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 H 1.09003 * 109.50942 * 54.93970 * 3 2 1 5 5 C 1.53096 * 109.51013 * 294.85254 * 3 2 1 6 6 O 1.43018 * 109.25794 * 183.26301 * 5 3 2 7 7 C 1.43024 * 113.77781 * 58.59865 * 6 5 3 8 8 C 1.53092 * 109.25527 * 301.35474 * 7 6 5 9 9 N 1.47016 * 109.50540 * 175.02195 * 3 2 1 10 10 C 1.46895 * 111.00345 * 302.32694 * 9 3 2 11 11 C 1.52995 * 109.47134 * 184.41193 * 10 9 3 12 12 C 1.53007 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47068 * 180.02562 * 12 11 10 14 14 H 1.07991 * 119.99662 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99893 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99990 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47313 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47068 * 119.99955 * 17 15 13 20 20 H 1.48504 * 109.47018 * 240.00256 * 17 15 13 21 21 H 1.08996 * 109.46823 * 185.73660 * 1 2 3 22 22 H 1.09002 * 109.47047 * 65.73614 * 1 2 3 23 23 H 1.09001 * 109.46850 * 305.73955 * 1 2 3 24 24 H 1.08993 * 109.46919 * 120.00089 * 2 1 3 25 25 H 1.08993 * 109.46980 * 240.00292 * 2 1 3 26 26 H 1.09004 * 109.50453 * 303.14927 * 5 3 2 27 27 H 1.08998 * 109.51153 * 63.27958 * 5 3 2 28 28 H 1.08992 * 109.50745 * 181.41896 * 7 6 5 29 29 H 1.09005 * 109.50154 * 61.29118 * 7 6 5 30 30 H 1.08998 * 109.51272 * 296.91037 * 8 7 6 31 31 H 1.08998 * 109.54241 * 176.80015 * 8 7 6 32 32 H 1.09001 * 109.47045 * 304.41364 * 10 9 3 33 33 H 1.09006 * 109.46893 * 64.40955 * 10 9 3 34 34 H 1.09001 * 109.47294 * 300.00018 * 11 10 9 35 35 H 1.08997 * 109.47309 * 60.00125 * 11 10 9 36 36 H 1.09001 * 109.46752 * 299.99921 * 12 11 10 37 37 H 1.08997 * 109.47330 * 59.99708 * 12 11 10 38 38 H 0.96995 * 120.00052 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6049 1.9824 0.8410 5 6 1.6386 2.1267 -1.3094 6 8 2.1825 3.4492 -1.3367 7 6 3.6077 3.4890 -1.2224 8 6 4.0280 2.8190 0.0884 9 7 3.5052 1.4452 0.1203 10 6 3.9348 0.7467 1.3390 11 6 5.4530 0.8650 1.4864 12 6 5.9005 0.1368 2.7555 13 6 7.3959 0.2539 2.9011 14 1 7.9697 0.7932 2.1621 15 6 8.0313 -0.3277 3.9777 16 7 7.3324 -0.9841 4.8778 17 14 9.8849 -0.1832 4.1577 18 1 10.4333 0.5989 3.0207 19 1 10.2062 0.5056 5.4336 20 1 10.4891 -1.5398 4.1617 21 1 -0.3633 -1.0225 0.1027 22 1 -0.3633 0.4223 -0.9369 23 1 -0.3633 0.6003 0.8342 24 1 1.8934 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 2.0283 1.5562 -2.1525 27 1 0.5518 2.1780 -1.3751 28 1 3.9442 4.5257 -1.2255 29 1 4.0551 2.9578 -2.0626 30 1 3.6246 3.3815 0.9304 31 1 5.1157 2.7960 0.1537 32 1 3.4495 1.1959 2.2055 33 1 3.6571 -0.3053 1.2718 34 1 5.9383 0.4157 0.6199 35 1 5.7307 1.9168 1.5536 36 1 5.4152 0.5857 3.6222 37 1 5.6228 -0.9150 2.6880 38 1 7.7793 -1.3929 5.6354 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:58 Heat of formation + Delta-G solvation = -81.869643 kcal Electronic energy + Delta-G solvation = -16260.550310 eV Core-core repulsion = 13715.430969 eV Total energy + Delta-G solvation = -2545.119341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88808 -37.58679 -35.93044 -34.91224 -33.00080 -30.65744 -29.23319 -27.03306 -25.75050 -24.20341 -22.78220 -21.69468 -20.92323 -18.53818 -17.49683 -17.27130 -16.52967 -16.46852 -16.06952 -15.62481 -15.42768 -14.93818 -14.51570 -14.27841 -14.04676 -13.64130 -13.35313 -13.11242 -12.73544 -12.65242 -12.50555 -12.42573 -12.19288 -11.99022 -11.71622 -11.46440 -11.40472 -11.27731 -11.10152 -10.57941 -10.52608 -9.38457 -8.21796 -6.33040 1.39452 1.39727 1.53324 2.39711 2.73636 2.93504 3.11588 3.75636 3.87160 3.97746 4.10834 4.15796 4.23875 4.32972 4.41969 4.51283 4.54633 4.63435 4.68978 4.77821 4.80778 4.84761 4.93542 4.99687 5.07454 5.17511 5.23087 5.25000 5.38930 5.49197 5.69831 5.82713 5.96566 6.03542 6.18291 6.24278 6.83812 7.36505 8.90544 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038496 B = 0.005362 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.164851 B = 5220.262380 C = 5821.638806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.046 3.954 4 H 0.034 0.966 5 C 0.071 3.929 6 O -0.402 6.402 7 C 0.068 3.932 8 C 0.010 3.990 9 N -0.537 5.537 10 C 0.067 3.933 11 C -0.093 4.093 12 C 0.026 3.974 13 C -0.541 4.541 14 H 0.060 0.940 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.277 1.277 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.017 0.983 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.053 0.947 36 H -0.012 1.012 37 H -0.008 1.008 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.693 5.768 -12.528 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.062 4.062 4 H 0.052 0.948 5 C -0.005 4.005 6 O -0.321 6.321 7 C -0.009 4.009 8 C -0.118 4.118 9 N -0.262 5.262 10 C -0.060 4.060 11 C -0.131 4.131 12 C -0.012 4.012 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.006 0.994 37 H 0.011 0.989 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.606 5.598 -12.809 18.169 hybrid contribution 0.837 -0.049 1.524 1.739 sum -10.769 5.549 -11.285 16.557 Atomic orbital electron populations 1.21778 0.93577 1.02590 1.02513 1.21560 0.97132 0.94169 1.02657 1.22459 0.87286 0.97935 0.98535 0.94781 1.22860 0.99822 0.82603 0.95248 1.87928 1.21617 1.28353 1.94211 1.22763 0.80641 1.02036 0.95439 1.22921 1.01756 0.88652 0.98461 1.62338 1.10191 1.15719 1.37922 1.22069 0.95775 0.98862 0.89324 1.21487 0.93600 0.99860 0.98124 1.18967 0.95159 0.94328 0.92711 1.21702 0.93958 1.33841 1.08443 0.92167 1.26000 1.03749 0.94714 0.95423 1.70106 1.37721 1.36505 1.13165 0.85377 0.79100 0.78113 0.78330 1.18514 1.20347 1.20289 0.91587 0.90991 0.92926 0.92760 0.90782 0.91813 0.86481 0.86587 0.91728 0.95253 0.89129 0.96446 0.90716 0.92622 0.92832 0.99388 0.98931 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.53 71.98 0.69 -1.79 16 2 C -0.12 -2.65 5.25 30.60 0.16 -2.49 16 3 C 0.05 1.19 2.05 44.93 0.09 1.28 16 4 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 5 C 0.07 1.55 5.97 72.01 0.43 1.98 16 6 O -0.40 -10.13 10.82 -148.98 -1.61 -11.74 16 7 C 0.07 1.57 7.01 72.01 0.50 2.08 16 8 C 0.01 0.29 5.13 86.31 0.44 0.73 16 9 N -0.54 -16.32 4.65 -870.01 -4.04 -20.36 16 10 C 0.07 2.43 4.55 86.30 0.39 2.82 16 11 C -0.09 -3.93 4.65 30.59 0.14 -3.79 16 12 C 0.03 1.40 4.97 29.85 0.15 1.55 16 13 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 16 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 17 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 0.97 6.94 -2.39 -0.02 0.95 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 1.42 6.20 -2.39 -0.01 1.40 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.12 1.99 6.87 -2.39 -0.02 1.97 16 28 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 2.66 6.06 -2.39 -0.01 2.64 16 32 H 0.02 0.66 8.13 -2.39 -0.02 0.64 16 33 H 0.07 2.70 6.41 -2.38 -0.02 2.69 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 2.20 6.26 -2.39 -0.01 2.18 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -65.24 295.78 1.35 -63.89 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.00 Total: 7.20 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 3.69 Total: -28.34 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.76 Total: -77.67 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.61 Total: -11.74 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.24 1.35 -63.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.978 kcal (2) G-P(sol) polarization free energy of solvation -65.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds